Wall clock time and date at job start Tue Mar 31 2020 22:36:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.35492 * 126.98767 * 2 1
4 4 N 1.30512 * 107.31495 * 180.22538 * 3 2 1
5 5 N 1.28602 * 109.66926 * 359.77680 * 4 3 2
6 6 C 1.30521 * 109.67255 * 359.97438 * 5 4 3
7 7 C 1.50704 * 126.34438 * 179.97438 * 6 5 4
8 8 C 1.53002 * 109.46992 * 90.02627 * 7 6 5
9 9 N 1.46501 * 109.46590 * 179.97438 * 8 7 6
10 10 C 1.34776 * 119.99267 * 177.17764 * 9 8 7
11 11 O 1.21669 * 120.00406 * 5.31413 * 10 9 8
12 12 C 1.46896 * 119.99520 * 185.31734 * 10 9 8
13 13 C 1.36122 * 125.43224 * 186.41043 * 12 10 9
14 14 C 1.41705 * 107.74715 * 179.97438 * 13 12 10
15 15 C 1.40020 * 133.34983 * 179.97438 * 14 13 12
16 16 C 1.36577 * 119.83046 * 180.02562 * 15 14 13
17 17 C 1.38860 * 120.59945 * 359.97438 * 16 15 14
18 18 C 1.37847 * 120.63218 * 0.24223 * 17 16 15
19 19 C 1.39083 * 119.81761 * 359.55434 * 18 17 16
20 20 N 1.37838 * 133.16877 * 180.10097 * 19 18 17
21 21 C 1.36889 * 125.62008 * 0.29813 * 20 19 18
22 22 H 1.07995 * 119.99856 * 222.06367 * 21 20 19
23 23 C 1.39010 * 119.99887 * 42.06328 * 21 20 19
24 24 N 1.31346 * 120.00255 * 11.28103 * 23 21 20
25 25 Si 1.86801 * 119.99851 * 191.28550 * 23 21 20
26 26 H 1.48501 * 109.47143 * 59.99575 * 25 23 21
27 27 H 1.48501 * 109.47046 * 179.97438 * 25 23 21
28 28 H 1.48500 * 109.47164 * 300.00087 * 25 23 21
29 29 H 1.09003 * 109.47131 * 270.15411 * 1 2 3
30 30 H 1.08999 * 109.47244 * 30.15608 * 1 2 3
31 31 H 1.09001 * 109.47574 * 150.15564 * 1 2 3
32 32 H 1.08010 * 126.33920 * 359.97438 * 3 2 1
33 33 H 1.09000 * 109.46859 * 330.02839 * 7 6 5
34 34 H 1.08999 * 109.47062 * 210.02961 * 7 6 5
35 35 H 1.09002 * 109.46706 * 60.00102 * 8 7 6
36 36 H 1.08995 * 109.46781 * 300.00041 * 8 7 6
37 37 H 0.96999 * 120.00310 * 357.17932 * 9 8 7
38 38 H 1.07995 * 126.12914 * 359.95343 * 13 12 10
39 39 H 1.07997 * 120.08616 * 0.03361 * 15 14 13
40 40 H 1.07996 * 119.70023 * 179.97438 * 16 15 14
41 41 H 1.07997 * 119.68506 * 180.02562 * 17 16 15
42 42 H 1.08003 * 120.09072 * 179.70343 * 18 17 16
43 43 H 0.97002 * 120.00193 * 183.61667 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2801 1.0823 0.0000
4 7 3.5091 0.6429 -0.0049
5 7 3.5090 -0.6431 -0.0032
6 6 2.2800 -1.0824 0.0034
7 6 1.8475 -2.5261 0.0068
8 6 1.7079 -3.0132 1.4505
9 7 1.2869 -4.4164 1.4538
10 6 1.1539 -5.0772 2.6209
11 8 1.2888 -4.4841 3.6746
12 6 0.8461 -6.5135 2.6206
13 6 0.5673 -7.2611 3.7235
14 6 0.3278 -8.5904 3.2951
15 6 0.0020 -9.7736 3.9693
16 6 -0.1707 -10.9311 3.2653
17 6 -0.0266 -10.9468 1.8843
18 6 0.2981 -9.7957 1.1990
19 6 0.4748 -8.6037 1.8936
20 7 0.7927 -7.3214 1.5005
21 6 1.0178 -6.9150 0.2129
22 1 1.8310 -6.2387 -0.0055
23 6 0.1997 -7.3726 -0.8136
24 7 -0.9137 -8.0099 -0.5315
25 14 0.6837 -7.0814 -2.5941
26 1 1.9930 -7.7283 -2.8633
27 1 -0.3486 -7.6631 -3.4892
28 1 0.7919 -5.6218 -2.8453
29 1 -0.3633 0.0028 1.0277
30 1 -0.3634 0.8886 -0.5162
31 1 -0.3634 -0.8914 -0.5114
32 1 1.9702 2.1169 -0.0004
33 1 2.5935 -3.1300 -0.5098
34 1 0.8884 -2.6193 -0.5025
35 1 0.9619 -2.4092 1.9671
36 1 2.6670 -2.9199 1.9597
37 1 1.1040 -4.8699 0.6160
38 1 0.5349 -6.9049 4.7426
39 1 -0.1126 -9.7708 5.0432
40 1 -0.4216 -11.8426 3.7875
41 1 -0.1669 -11.8703 1.3424
42 1 0.4127 -9.8188 0.1253
43 1 -1.4580 -8.3752 -1.2465
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000609569788.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:36:16
Heat of formation + Delta-G solvation = 88.143213 kcal
Electronic energy + Delta-G solvation = -28589.685026 eV
Core-core repulsion = 24636.199088 eV
Total energy + Delta-G solvation = -3953.485938 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.144 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-44.14997 -42.21658 -40.26311 -37.59204 -36.88765 -35.92898 -35.36185 -33.49773
-32.44298 -30.85002 -30.24177 -29.34148 -28.43362 -26.82595 -25.66794 -23.73812
-23.36346 -22.72573 -21.91444 -21.67494 -20.90297 -19.86386 -18.32082 -17.89000
-17.54783 -17.34968 -16.84406 -16.79948 -16.46460 -16.24779 -16.06818 -15.48705
-15.32112 -14.96490 -14.73022 -14.60516 -14.52688 -14.33342 -14.15202 -13.62920
-13.55163 -13.44187 -13.25595 -13.01451 -12.76596 -12.70834 -12.55944 -12.32774
-12.19570 -11.90840 -11.45798 -11.39748 -11.23065 -11.13931 -10.95713 -10.40915
-10.32759 -10.14754 -8.96065 -8.61526 -8.29221 -6.49429 0.11137 0.76325
1.11816 1.37369 1.41759 1.45900 1.52576 1.54477 1.79432 2.10689
2.21397 2.49454 2.78615 2.91971 3.30897 3.37167 3.65930 3.73995
3.85495 3.87758 4.05410 4.23587 4.27125 4.31957 4.40202 4.44052
4.55649 4.65307 4.72238 4.75257 4.81541 4.85967 4.96183 5.01799
5.07849 5.12102 5.21451 5.35938 5.39440 5.46280 5.74157 5.90989
5.91269 5.97377 6.20430 6.25255 6.51496 6.57683 6.92259 7.21958
7.49442 7.67813 8.39491
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.014180 B = 0.003261 C = 0.002800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1974.117673 B = 8583.123753 C = 9998.836967
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.059 3.941
2 N -0.470 5.470
3 C 0.166 3.834
4 N -0.350 5.350
5 N -0.335 5.335
6 C 0.178 3.822
7 C -0.037 4.037
8 C 0.133 3.867
9 N -0.717 5.717
10 C 0.596 3.404
11 O -0.581 6.581
12 C -0.046 4.046
13 C -0.178 4.178
14 C -0.156 4.156
15 C -0.092 4.092
16 C -0.154 4.154
17 C -0.136 4.136
18 C -0.083 4.083
19 C 0.074 3.926
20 N -0.269 5.269
21 C -0.396 4.396
22 H 0.118 0.882
23 C 0.028 3.972
24 N -0.846 5.846
25 Si 0.985 3.015
26 H -0.267 1.267
27 H -0.276 1.276
28 H -0.241 1.241
29 H 0.093 0.907
30 H 0.127 0.873
31 H 0.099 0.901
32 H 0.265 0.735
33 H 0.107 0.893
34 H 0.117 0.883
35 H 0.067 0.933
36 H 0.056 0.944
37 H 0.419 0.581
38 H 0.140 0.860
39 H 0.132 0.868
40 H 0.145 0.855
41 H 0.137 0.863
42 H 0.102 0.898
43 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.782 9.253 -4.542 10.980
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 N -0.160 5.160
3 C -0.122 4.122
4 N -0.189 5.189
5 N -0.175 5.175
6 C -0.092 4.092
7 C -0.077 4.077
8 C 0.009 3.991
9 N -0.376 5.376
10 C 0.385 3.615
11 O -0.463 6.463
12 C -0.161 4.161
13 C -0.206 4.206
14 C -0.160 4.160
15 C -0.111 4.111
16 C -0.173 4.173
17 C -0.157 4.157
18 C -0.103 4.103
19 C -0.041 4.041
20 N 0.066 4.934
21 C -0.522 4.522
22 H 0.135 0.865
23 C -0.183 4.183
24 N -0.475 5.475
25 Si 0.805 3.195
26 H -0.192 1.192
27 H -0.201 1.201
28 H -0.164 1.164
29 H 0.111 0.889
30 H 0.145 0.855
31 H 0.118 0.882
32 H 0.281 0.719
33 H 0.125 0.875
34 H 0.135 0.865
35 H 0.086 0.914
36 H 0.074 0.926
37 H 0.265 0.735
38 H 0.158 0.842
39 H 0.150 0.850
40 H 0.163 0.837
41 H 0.154 0.846
42 H 0.120 0.880
43 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -2.343 9.853 -4.327 11.013
hybrid contribution -1.318 -0.080 -0.981 1.645
sum -3.660 9.773 -5.308 11.708
Atomic orbital electron populations
1.22568 0.72404 1.07439 1.05748 1.46448 1.10835 1.05701 1.53007
1.27295 0.86121 0.96595 1.02212 1.74147 1.20868 1.03136 1.20702
1.74193 1.18992 1.04143 1.20195 1.24552 0.87315 0.92706 1.04608
1.20127 1.04948 0.85891 0.96713 1.21131 1.00077 0.81553 0.96381
1.46484 1.68555 1.12689 1.09869 1.17188 0.75615 0.84916 0.83804
1.90695 1.54091 1.68957 1.32514 1.20408 1.15419 0.91328 0.88919
1.20608 1.10350 0.92385 0.97302 1.18414 1.09742 0.94844 0.93026
1.20470 1.00107 0.90861 0.99636 1.20737 1.04431 0.98175 0.93926
1.21028 1.02516 0.97142 0.94977 1.20161 1.01171 0.90476 0.98496
1.18668 1.05878 0.86500 0.93011 1.40136 1.44637 1.03910 1.04667
1.19951 1.16342 1.34724 0.81200 0.86453 1.26471 0.92720 0.94398
1.04733 1.70051 1.10382 1.30367 1.36664 0.85107 0.78470 0.80873
0.75023 1.19161 1.20065 1.16386 0.88888 0.85482 0.88218 0.71895
0.87459 0.86495 0.91440 0.92598 0.73530 0.84244 0.84992 0.83716
0.84556 0.88028 0.90327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.46 11.04 127.77 1.41 1.87 16
2 N -0.47 -8.18 3.15 -542.07 -1.71 -9.88 16
3 C 0.17 2.99 12.74 180.12 2.30 5.29 16
4 N -0.35 -10.12 12.21 -59.99 -0.73 -10.85 16
5 N -0.33 -10.72 12.21 -50.15 -0.61 -11.33 16
6 C 0.18 4.44 7.28 137.98 1.01 5.44 16
7 C -0.04 -0.86 5.69 29.85 0.17 -0.69 16
8 C 0.13 3.96 5.66 86.38 0.49 4.45 16
9 N -0.72 -26.18 5.33 -466.87 -2.49 -28.66 16
10 C 0.60 26.70 7.76 86.51 0.67 27.37 16
11 O -0.58 -28.04 16.86 -4.25 -0.07 -28.11 16
12 C -0.05 -2.23 6.77 39.91 0.27 -1.96 16
13 C -0.18 -8.45 10.55 22.63 0.24 -8.21 16
14 C -0.16 -7.27 6.16 -21.33 -0.13 -7.40 16
15 C -0.09 -3.57 10.06 22.31 0.22 -3.35 16
16 C -0.15 -5.37 9.97 22.03 0.22 -5.16 16
17 C -0.14 -5.15 10.02 22.33 0.22 -4.92 16
18 C -0.08 -3.78 8.55 22.38 0.19 -3.58 16
19 C 0.07 3.67 6.04 39.06 0.24 3.91 16
20 N -0.27 -13.30 2.81 -331.33 -0.93 -14.24 16
21 C -0.40 -18.03 7.69 84.09 0.65 -17.38 16
22 H 0.12 4.92 6.43 -2.91 -0.02 4.90 16
23 C 0.03 1.23 4.66 84.95 0.40 1.62 16
24 N -0.85 -39.96 10.77 21.67 0.23 -39.73 16
25 Si 0.99 32.79 29.57 68.60 2.03 34.82 16
26 H -0.27 -9.03 7.11 99.48 0.71 -8.33 16
27 H -0.28 -9.17 7.11 99.48 0.71 -8.46 16
28 H -0.24 -7.07 7.11 99.48 0.71 -6.36 16
29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16
30 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16
31 H 0.10 0.71 7.19 -2.39 -0.02 0.70 16
32 H 0.27 1.69 8.06 -2.91 -0.02 1.67 16
33 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16
34 H 0.12 2.07 7.21 -2.39 -0.02 2.05 16
35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
37 H 0.42 15.08 4.57 -92.71 -0.42 14.66 16
38 H 0.14 6.13 8.06 -2.91 -0.02 6.11 16
39 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16
40 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16
41 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16
42 H 0.10 4.74 6.60 -2.91 -0.02 4.72 16
43 H 0.29 12.59 8.31 -92.71 -0.77 11.82 16
Total: -1.00 -72.81 366.19 4.92 -67.90
By element:
Atomic # 1 Polarization: 42.15 SS G_CDS: 0.64 Total: 42.79 kcal
Atomic # 6 Polarization: -11.26 SS G_CDS: 8.56 Total: -2.70 kcal
Atomic # 7 Polarization: -108.45 SS G_CDS: -6.24 Total: -114.69 kcal
Atomic # 8 Polarization: -28.04 SS G_CDS: -0.07 Total: -28.11 kcal
Atomic # 14 Polarization: 32.79 SS G_CDS: 2.03 Total: 34.82 kcal
Total: -72.81 4.92 -67.90 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609569788.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 156.039 kcal
(2) G-P(sol) polarization free energy of solvation -72.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.226 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.896 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.143 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds