Wall clock time and date at job start Tue Mar 31 2020 22:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35492 * 126.98767 * 2 1 4 4 N 1.30512 * 107.31495 * 180.22538 * 3 2 1 5 5 N 1.28602 * 109.66926 * 359.77680 * 4 3 2 6 6 C 1.30521 * 109.67255 * 359.97438 * 5 4 3 7 7 C 1.50704 * 126.34438 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46992 * 90.02627 * 7 6 5 9 9 N 1.46501 * 109.46590 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99267 * 177.17764 * 9 8 7 11 11 O 1.21669 * 120.00406 * 5.31413 * 10 9 8 12 12 C 1.46896 * 119.99520 * 185.31734 * 10 9 8 13 13 C 1.36122 * 125.43224 * 186.41043 * 12 10 9 14 14 C 1.41705 * 107.74715 * 179.97438 * 13 12 10 15 15 C 1.40020 * 133.34983 * 179.97438 * 14 13 12 16 16 C 1.36577 * 119.83046 * 180.02562 * 15 14 13 17 17 C 1.38860 * 120.59945 * 359.97438 * 16 15 14 18 18 C 1.37847 * 120.63218 * 0.24223 * 17 16 15 19 19 C 1.39083 * 119.81761 * 359.55434 * 18 17 16 20 20 N 1.37838 * 133.16877 * 180.10097 * 19 18 17 21 21 C 1.36889 * 125.62008 * 0.29813 * 20 19 18 22 22 H 1.07995 * 119.99856 * 222.06367 * 21 20 19 23 23 C 1.39010 * 119.99887 * 42.06328 * 21 20 19 24 24 N 1.31346 * 120.00255 * 11.28103 * 23 21 20 25 25 Si 1.86801 * 119.99851 * 191.28550 * 23 21 20 26 26 H 1.48501 * 109.47143 * 59.99575 * 25 23 21 27 27 H 1.48501 * 109.47046 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47164 * 300.00087 * 25 23 21 29 29 H 1.09003 * 109.47131 * 270.15411 * 1 2 3 30 30 H 1.08999 * 109.47244 * 30.15608 * 1 2 3 31 31 H 1.09001 * 109.47574 * 150.15564 * 1 2 3 32 32 H 1.08010 * 126.33920 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46859 * 330.02839 * 7 6 5 34 34 H 1.08999 * 109.47062 * 210.02961 * 7 6 5 35 35 H 1.09002 * 109.46706 * 60.00102 * 8 7 6 36 36 H 1.08995 * 109.46781 * 300.00041 * 8 7 6 37 37 H 0.96999 * 120.00310 * 357.17932 * 9 8 7 38 38 H 1.07995 * 126.12914 * 359.95343 * 13 12 10 39 39 H 1.07997 * 120.08616 * 0.03361 * 15 14 13 40 40 H 1.07996 * 119.70023 * 179.97438 * 16 15 14 41 41 H 1.07997 * 119.68506 * 180.02562 * 17 16 15 42 42 H 1.08003 * 120.09072 * 179.70343 * 18 17 16 43 43 H 0.97002 * 120.00193 * 183.61667 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 -0.0049 5 7 3.5090 -0.6431 -0.0032 6 6 2.2800 -1.0824 0.0034 7 6 1.8475 -2.5261 0.0068 8 6 1.7079 -3.0132 1.4505 9 7 1.2869 -4.4164 1.4538 10 6 1.1539 -5.0772 2.6209 11 8 1.2888 -4.4841 3.6746 12 6 0.8461 -6.5135 2.6206 13 6 0.5673 -7.2611 3.7235 14 6 0.3278 -8.5904 3.2951 15 6 0.0020 -9.7736 3.9693 16 6 -0.1707 -10.9311 3.2653 17 6 -0.0266 -10.9468 1.8843 18 6 0.2981 -9.7957 1.1990 19 6 0.4748 -8.6037 1.8936 20 7 0.7927 -7.3214 1.5005 21 6 1.0178 -6.9150 0.2129 22 1 1.8310 -6.2387 -0.0055 23 6 0.1997 -7.3726 -0.8136 24 7 -0.9137 -8.0099 -0.5315 25 14 0.6837 -7.0814 -2.5941 26 1 1.9930 -7.7283 -2.8633 27 1 -0.3486 -7.6631 -3.4892 28 1 0.7919 -5.6218 -2.8453 29 1 -0.3633 0.0028 1.0277 30 1 -0.3634 0.8886 -0.5162 31 1 -0.3634 -0.8914 -0.5114 32 1 1.9702 2.1169 -0.0004 33 1 2.5935 -3.1300 -0.5098 34 1 0.8884 -2.6193 -0.5025 35 1 0.9619 -2.4092 1.9671 36 1 2.6670 -2.9199 1.9597 37 1 1.1040 -4.8699 0.6160 38 1 0.5349 -6.9049 4.7426 39 1 -0.1126 -9.7708 5.0432 40 1 -0.4216 -11.8426 3.7875 41 1 -0.1669 -11.8703 1.3424 42 1 0.4127 -9.8188 0.1253 43 1 -1.4580 -8.3752 -1.2465 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609569788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:16 Heat of formation + Delta-G solvation = 88.143213 kcal Electronic energy + Delta-G solvation = -28589.685026 eV Core-core repulsion = 24636.199088 eV Total energy + Delta-G solvation = -3953.485938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.14997 -42.21658 -40.26311 -37.59204 -36.88765 -35.92898 -35.36185 -33.49773 -32.44298 -30.85002 -30.24177 -29.34148 -28.43362 -26.82595 -25.66794 -23.73812 -23.36346 -22.72573 -21.91444 -21.67494 -20.90297 -19.86386 -18.32082 -17.89000 -17.54783 -17.34968 -16.84406 -16.79948 -16.46460 -16.24779 -16.06818 -15.48705 -15.32112 -14.96490 -14.73022 -14.60516 -14.52688 -14.33342 -14.15202 -13.62920 -13.55163 -13.44187 -13.25595 -13.01451 -12.76596 -12.70834 -12.55944 -12.32774 -12.19570 -11.90840 -11.45798 -11.39748 -11.23065 -11.13931 -10.95713 -10.40915 -10.32759 -10.14754 -8.96065 -8.61526 -8.29221 -6.49429 0.11137 0.76325 1.11816 1.37369 1.41759 1.45900 1.52576 1.54477 1.79432 2.10689 2.21397 2.49454 2.78615 2.91971 3.30897 3.37167 3.65930 3.73995 3.85495 3.87758 4.05410 4.23587 4.27125 4.31957 4.40202 4.44052 4.55649 4.65307 4.72238 4.75257 4.81541 4.85967 4.96183 5.01799 5.07849 5.12102 5.21451 5.35938 5.39440 5.46280 5.74157 5.90989 5.91269 5.97377 6.20430 6.25255 6.51496 6.57683 6.92259 7.21958 7.49442 7.67813 8.39491 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.003261 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.117673 B = 8583.123753 C = 9998.836967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.470 5.470 3 C 0.166 3.834 4 N -0.350 5.350 5 N -0.335 5.335 6 C 0.178 3.822 7 C -0.037 4.037 8 C 0.133 3.867 9 N -0.717 5.717 10 C 0.596 3.404 11 O -0.581 6.581 12 C -0.046 4.046 13 C -0.178 4.178 14 C -0.156 4.156 15 C -0.092 4.092 16 C -0.154 4.154 17 C -0.136 4.136 18 C -0.083 4.083 19 C 0.074 3.926 20 N -0.269 5.269 21 C -0.396 4.396 22 H 0.118 0.882 23 C 0.028 3.972 24 N -0.846 5.846 25 Si 0.985 3.015 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.241 1.241 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.419 0.581 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.102 0.898 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 9.253 -4.542 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.160 5.160 3 C -0.122 4.122 4 N -0.189 5.189 5 N -0.175 5.175 6 C -0.092 4.092 7 C -0.077 4.077 8 C 0.009 3.991 9 N -0.376 5.376 10 C 0.385 3.615 11 O -0.463 6.463 12 C -0.161 4.161 13 C -0.206 4.206 14 C -0.160 4.160 15 C -0.111 4.111 16 C -0.173 4.173 17 C -0.157 4.157 18 C -0.103 4.103 19 C -0.041 4.041 20 N 0.066 4.934 21 C -0.522 4.522 22 H 0.135 0.865 23 C -0.183 4.183 24 N -0.475 5.475 25 Si 0.805 3.195 26 H -0.192 1.192 27 H -0.201 1.201 28 H -0.164 1.164 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.281 0.719 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.265 0.735 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.120 0.880 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.343 9.853 -4.327 11.013 hybrid contribution -1.318 -0.080 -0.981 1.645 sum -3.660 9.773 -5.308 11.708 Atomic orbital electron populations 1.22568 0.72404 1.07439 1.05748 1.46448 1.10835 1.05701 1.53007 1.27295 0.86121 0.96595 1.02212 1.74147 1.20868 1.03136 1.20702 1.74193 1.18992 1.04143 1.20195 1.24552 0.87315 0.92706 1.04608 1.20127 1.04948 0.85891 0.96713 1.21131 1.00077 0.81553 0.96381 1.46484 1.68555 1.12689 1.09869 1.17188 0.75615 0.84916 0.83804 1.90695 1.54091 1.68957 1.32514 1.20408 1.15419 0.91328 0.88919 1.20608 1.10350 0.92385 0.97302 1.18414 1.09742 0.94844 0.93026 1.20470 1.00107 0.90861 0.99636 1.20737 1.04431 0.98175 0.93926 1.21028 1.02516 0.97142 0.94977 1.20161 1.01171 0.90476 0.98496 1.18668 1.05878 0.86500 0.93011 1.40136 1.44637 1.03910 1.04667 1.19951 1.16342 1.34724 0.81200 0.86453 1.26471 0.92720 0.94398 1.04733 1.70051 1.10382 1.30367 1.36664 0.85107 0.78470 0.80873 0.75023 1.19161 1.20065 1.16386 0.88888 0.85482 0.88218 0.71895 0.87459 0.86495 0.91440 0.92598 0.73530 0.84244 0.84992 0.83716 0.84556 0.88028 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 11.04 127.77 1.41 1.87 16 2 N -0.47 -8.18 3.15 -542.07 -1.71 -9.88 16 3 C 0.17 2.99 12.74 180.12 2.30 5.29 16 4 N -0.35 -10.12 12.21 -59.99 -0.73 -10.85 16 5 N -0.33 -10.72 12.21 -50.15 -0.61 -11.33 16 6 C 0.18 4.44 7.28 137.98 1.01 5.44 16 7 C -0.04 -0.86 5.69 29.85 0.17 -0.69 16 8 C 0.13 3.96 5.66 86.38 0.49 4.45 16 9 N -0.72 -26.18 5.33 -466.87 -2.49 -28.66 16 10 C 0.60 26.70 7.76 86.51 0.67 27.37 16 11 O -0.58 -28.04 16.86 -4.25 -0.07 -28.11 16 12 C -0.05 -2.23 6.77 39.91 0.27 -1.96 16 13 C -0.18 -8.45 10.55 22.63 0.24 -8.21 16 14 C -0.16 -7.27 6.16 -21.33 -0.13 -7.40 16 15 C -0.09 -3.57 10.06 22.31 0.22 -3.35 16 16 C -0.15 -5.37 9.97 22.03 0.22 -5.16 16 17 C -0.14 -5.15 10.02 22.33 0.22 -4.92 16 18 C -0.08 -3.78 8.55 22.38 0.19 -3.58 16 19 C 0.07 3.67 6.04 39.06 0.24 3.91 16 20 N -0.27 -13.30 2.81 -331.33 -0.93 -14.24 16 21 C -0.40 -18.03 7.69 84.09 0.65 -17.38 16 22 H 0.12 4.92 6.43 -2.91 -0.02 4.90 16 23 C 0.03 1.23 4.66 84.95 0.40 1.62 16 24 N -0.85 -39.96 10.77 21.67 0.23 -39.73 16 25 Si 0.99 32.79 29.57 68.60 2.03 34.82 16 26 H -0.27 -9.03 7.11 99.48 0.71 -8.33 16 27 H -0.28 -9.17 7.11 99.48 0.71 -8.46 16 28 H -0.24 -7.07 7.11 99.48 0.71 -6.36 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.10 0.71 7.19 -2.39 -0.02 0.70 16 32 H 0.27 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.12 2.07 7.21 -2.39 -0.02 2.05 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.42 15.08 4.57 -92.71 -0.42 14.66 16 38 H 0.14 6.13 8.06 -2.91 -0.02 6.11 16 39 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 41 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 42 H 0.10 4.74 6.60 -2.91 -0.02 4.72 16 43 H 0.29 12.59 8.31 -92.71 -0.77 11.82 16 Total: -1.00 -72.81 366.19 4.92 -67.90 By element: Atomic # 1 Polarization: 42.15 SS G_CDS: 0.64 Total: 42.79 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 8.56 Total: -2.70 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -6.24 Total: -114.69 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.07 Total: -28.11 kcal Atomic # 14 Polarization: 32.79 SS G_CDS: 2.03 Total: 34.82 kcal Total: -72.81 4.92 -67.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609569788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.039 kcal (2) G-P(sol) polarization free energy of solvation -72.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds