Wall clock time and date at job start Tue Mar 31 2020 22:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34353 * 125.69902 * 2 1 4 4 C 1.38047 * 107.52495 * 180.02562 * 3 2 1 5 5 C 1.43199 * 126.43569 * 179.97438 * 4 3 2 6 6 N 4.70759 * 152.85698 * 359.97438 * 2 1 3 7 7 C 1.41800 * 107.12568 * 0.02562 * 4 3 2 8 8 N 1.39848 * 126.05656 * 180.02562 * 7 4 3 9 9 C 1.34774 * 119.99919 * 179.97438 * 8 7 4 10 10 O 1.21585 * 120.00239 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00101 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00251 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47060 * 325.00368 * 12 11 9 14 14 C 1.52997 * 109.47289 * 205.00099 * 12 11 9 15 15 C 1.50699 * 109.47337 * 64.99998 * 14 12 11 16 16 H 1.08001 * 119.99707 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00057 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00040 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00122 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47180 * 89.99279 * 19 17 15 21 21 H 1.48497 * 109.47188 * 209.99969 * 19 17 15 22 22 H 1.48507 * 109.46854 * 329.99626 * 19 17 15 23 23 C 1.50701 * 109.46956 * 84.99989 * 12 11 9 24 24 C 1.38230 * 119.99878 * 39.72605 * 23 12 11 25 25 C 1.38243 * 119.99631 * 179.78728 * 24 23 12 26 26 C 1.38231 * 119.99827 * 0.44496 * 25 24 23 27 27 C 1.38229 * 120.00398 * 359.81209 * 26 25 24 28 28 C 1.38234 * 119.99919 * 359.97438 * 27 26 25 29 29 N 1.30932 * 107.87987 * 0.25769 * 7 4 3 30 30 H 1.08999 * 109.47270 * 90.00129 * 1 2 3 31 31 H 1.09001 * 109.47181 * 210.00123 * 1 2 3 32 32 H 1.09006 * 109.47016 * 329.99882 * 1 2 3 33 33 H 1.08000 * 126.23625 * 0.02562 * 3 2 1 34 34 H 0.97006 * 120.00346 * 359.97438 * 8 7 4 35 35 H 0.97006 * 120.00165 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.46881 * 185.00331 * 14 12 11 37 37 H 1.09002 * 109.47196 * 304.99846 * 14 12 11 38 38 H 0.97001 * 119.99777 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.00498 * 0.02562 * 24 23 12 40 40 H 1.08002 * 119.99997 * 180.27329 * 25 24 23 41 41 H 1.08007 * 119.99687 * 179.83113 * 26 25 24 42 42 H 1.08005 * 120.00342 * 179.97438 * 27 26 25 43 43 H 1.08005 * 120.00572 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0911 0.0000 4 6 3.5606 0.6605 -0.0006 5 6 4.7280 1.4898 -0.0013 6 7 5.6541 2.1477 -0.0010 7 6 3.5346 -0.7573 -0.0016 8 7 4.6499 -1.6009 -0.0019 9 6 4.4832 -2.9383 -0.0023 10 8 3.3632 -3.4114 -0.0019 11 7 5.5581 -3.7514 -0.0031 12 6 5.3769 -5.2052 -0.0030 13 1 4.4970 -5.4617 0.5870 14 6 6.6115 -5.8730 0.6057 15 6 6.7279 -5.4857 2.0574 16 1 5.9947 -4.8286 2.5013 17 6 7.7708 -5.9694 2.8185 18 7 8.6639 -6.7693 2.2777 19 14 7.9147 -5.4899 4.6181 20 1 7.1771 -6.4722 5.4526 21 1 9.3457 -5.4790 5.0146 22 1 7.3354 -4.1371 4.8177 23 6 5.1908 -5.6883 -1.4183 24 6 5.9423 -5.1394 -2.4404 25 6 5.7747 -5.5857 -3.7380 26 6 4.8491 -6.5743 -4.0148 27 6 4.0938 -7.1195 -2.9935 28 6 4.2645 -6.6764 -1.6952 29 7 2.2814 -1.1364 -0.0071 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.9141 2.1178 0.0004 34 1 5.5436 -1.2236 -0.0018 35 1 6.4517 -3.3741 -0.0038 36 1 6.5158 -6.9559 0.5250 37 1 7.5027 -5.5462 0.0699 38 1 9.3974 -7.1099 2.8133 39 1 6.6632 -4.3646 -2.2247 40 1 6.3650 -5.1600 -4.5360 41 1 4.7162 -6.9211 -5.0290 42 1 3.3703 -7.8917 -3.2097 43 1 3.6741 -7.1020 -0.8972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610973542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:07 Heat of formation + Delta-G solvation = 112.795636 kcal Electronic energy + Delta-G solvation = -28203.444437 eV Core-core repulsion = 24251.027508 eV Total energy + Delta-G solvation = -3952.416929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.63058 -39.83371 -38.61887 -36.55068 -35.63692 -34.66734 -32.89280 -32.45614 -30.96405 -30.53648 -30.35735 -28.77345 -27.03113 -24.95439 -22.76131 -22.51721 -22.23608 -21.89921 -20.05833 -19.81779 -19.17438 -17.77975 -16.97857 -16.61855 -16.14129 -16.03660 -15.73644 -15.10757 -14.89798 -14.58605 -14.54698 -14.24633 -13.96190 -13.75780 -13.41197 -13.37778 -13.04911 -12.89484 -12.82164 -12.61135 -12.50060 -12.49215 -12.09548 -11.54672 -11.11683 -11.01830 -10.88520 -10.83372 -10.71260 -10.57986 -10.44151 -9.78129 -9.73089 -9.29919 -9.07626 -8.61291 -8.50159 -8.45208 -8.28938 -8.16405 -6.08787 -4.12178 1.23964 1.78124 1.83166 1.96582 2.10000 2.58388 2.82830 3.28487 3.35511 3.37374 3.38900 3.74522 3.94404 4.20974 4.34867 4.39970 4.41899 4.59529 4.86546 5.05593 5.12841 5.21210 5.28153 5.28494 5.29611 5.39093 5.55065 5.58369 5.92902 5.95993 6.12783 6.36033 6.42411 6.52133 6.56855 6.62552 6.83161 6.86765 6.87821 6.90388 7.13318 7.42930 7.47006 7.50371 7.57209 7.66623 7.88142 8.25250 8.32509 8.91183 8.93848 9.53111 11.01675 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007375 B = 0.003982 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3795.465526 B = 7030.719268 C = 9341.399452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.356 5.356 3 C 0.135 3.865 4 C -0.215 4.215 5 C 0.292 3.708 6 N -0.435 5.435 7 C 0.372 3.628 8 N -0.653 5.653 9 C 0.698 3.302 10 O -0.547 6.547 11 N -0.709 5.709 12 C 0.203 3.797 13 H 0.089 0.911 14 C 0.024 3.976 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.072 4.072 24 C -0.107 4.107 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.106 4.106 29 N -0.267 5.267 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.191 0.809 34 H 0.416 0.584 35 H 0.399 0.601 36 H 0.037 0.963 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.257 12.416 -9.160 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.133 5.133 3 C -0.021 4.021 4 C -0.234 4.234 5 C -0.023 4.023 6 N -0.112 5.112 7 C 0.110 3.890 8 N -0.306 5.306 9 C 0.397 3.603 10 O -0.420 6.420 11 N -0.361 5.361 12 C 0.099 3.901 13 H 0.107 0.893 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.074 4.074 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.125 4.125 29 N -0.096 5.096 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.208 0.792 34 H 0.252 0.748 35 H 0.233 0.767 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.621 11.724 -9.105 20.836 hybrid contribution 1.287 0.994 1.010 1.914 sum -13.334 12.718 -8.095 20.126 Atomic orbital electron populations 1.22015 0.72763 1.05203 1.04074 1.48318 1.07388 1.03470 1.54083 1.22788 0.88692 0.94260 0.96345 1.15665 0.88750 0.89199 1.29755 1.24425 0.92298 0.93122 0.92456 1.81300 1.09604 1.08346 1.11972 1.18782 0.87753 0.86535 0.95948 1.42161 1.06550 1.04798 1.77049 1.15988 0.85962 0.79918 0.78419 1.90995 1.22459 1.73514 1.55005 1.45144 1.07052 1.06674 1.77273 1.20193 1.02892 0.76708 0.90321 0.89280 1.19410 0.90057 0.96382 0.95532 1.21135 1.10321 1.29610 0.94800 0.92338 1.24976 0.95716 0.94987 0.98386 1.69958 1.13982 1.32765 1.36343 0.86606 0.77136 0.79012 0.85340 1.20611 1.21265 1.19911 1.20562 0.94632 0.95597 0.96563 1.20896 0.99215 0.99968 0.92425 1.21035 0.98857 0.97933 0.96531 1.20988 0.97571 0.98065 0.98656 1.21034 0.99838 1.00147 0.93088 1.21011 0.97751 0.97164 0.96535 1.78207 0.98868 1.03322 1.29163 0.90025 0.88425 0.88929 0.79202 0.74777 0.76667 0.94499 0.95645 0.92865 0.86639 0.86804 0.86897 0.86630 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.44 59.85 0.68 1.17 16 2 N -0.36 -3.39 3.98 -67.57 -0.27 -3.66 16 3 C 0.14 1.04 11.47 -16.52 -0.19 0.85 16 4 C -0.21 -2.38 5.98 -106.68 -0.64 -3.02 16 5 C 0.29 3.49 15.62 -22.47 -0.35 3.14 16 6 N -0.43 -6.03 18.54 41.84 0.78 -5.26 16 7 C 0.37 5.31 7.81 -154.39 -1.21 4.11 16 8 N -0.65 -9.68 5.44 -15.29 -0.08 -9.76 16 9 C 0.70 12.69 8.49 -86.92 -0.74 11.95 16 10 O -0.55 -11.77 14.73 5.29 0.08 -11.70 16 11 N -0.71 -12.68 4.03 -59.81 -0.24 -12.92 16 12 C 0.20 4.09 2.12 -69.08 -0.15 3.94 16 13 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 14 C 0.02 0.56 4.50 -27.89 -0.13 0.43 16 15 C -0.52 -13.66 8.84 -34.44 -0.30 -13.97 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.07 -1.33 4.91 -104.62 -0.51 -1.85 16 24 C -0.11 -1.80 9.33 -39.58 -0.37 -2.17 16 25 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 26 C -0.13 -1.93 10.05 -39.59 -0.40 -2.33 16 27 C -0.12 -1.86 10.05 -39.59 -0.40 -2.26 16 28 C -0.11 -1.84 9.67 -39.58 -0.38 -2.23 16 29 N -0.27 -4.01 10.72 31.62 0.34 -3.67 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.19 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.42 5.08 8.63 -40.82 -0.35 4.73 16 35 H 0.40 6.46 8.62 -40.82 -0.35 6.10 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.12 1.82 7.71 -52.49 -0.40 1.41 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 43 H 0.12 2.00 8.04 -52.48 -0.42 1.58 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -35.89 386.76 -8.69 -44.58 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.26 Total: 8.12 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -5.57 Total: -2.94 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 1.26 Total: -60.00 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.89 -8.69 -44.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610973542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.378 kcal (2) G-P(sol) polarization free energy of solvation -35.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds