Wall clock time and date at job start Tue Mar 31 2020 22:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34353 * 125.69902 * 2 1 4 4 C 1.38047 * 107.52495 * 180.02562 * 3 2 1 5 5 C 1.43199 * 126.43569 * 179.97438 * 4 3 2 6 6 N 4.70759 * 152.85698 * 359.97438 * 2 1 3 7 7 C 1.41800 * 107.12568 * 0.02562 * 4 3 2 8 8 N 1.39848 * 126.05656 * 180.02562 * 7 4 3 9 9 C 1.34774 * 119.99919 * 179.97438 * 8 7 4 10 10 O 1.21585 * 120.00239 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00101 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00251 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47060 * 325.00368 * 12 11 9 14 14 C 1.52997 * 109.47289 * 205.00099 * 12 11 9 15 15 C 1.50699 * 109.47337 * 64.99998 * 14 12 11 16 16 H 1.08001 * 119.99707 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00057 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00040 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00122 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47180 * 89.99279 * 19 17 15 21 21 H 1.48497 * 109.47188 * 209.99969 * 19 17 15 22 22 H 1.48507 * 109.46854 * 329.99626 * 19 17 15 23 23 C 1.50701 * 109.46956 * 84.99989 * 12 11 9 24 24 C 1.38230 * 119.99878 * 39.72605 * 23 12 11 25 25 C 1.38243 * 119.99631 * 179.78728 * 24 23 12 26 26 C 1.38231 * 119.99827 * 0.44496 * 25 24 23 27 27 C 1.38229 * 120.00398 * 359.81209 * 26 25 24 28 28 C 1.38234 * 119.99919 * 359.97438 * 27 26 25 29 29 N 1.30932 * 107.87987 * 0.25769 * 7 4 3 30 30 H 1.08999 * 109.47270 * 90.00129 * 1 2 3 31 31 H 1.09001 * 109.47181 * 210.00123 * 1 2 3 32 32 H 1.09006 * 109.47016 * 329.99882 * 1 2 3 33 33 H 1.08000 * 126.23625 * 0.02562 * 3 2 1 34 34 H 0.97006 * 120.00346 * 359.97438 * 8 7 4 35 35 H 0.97006 * 120.00165 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.46881 * 185.00331 * 14 12 11 37 37 H 1.09002 * 109.47196 * 304.99846 * 14 12 11 38 38 H 0.97001 * 119.99777 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.00498 * 0.02562 * 24 23 12 40 40 H 1.08002 * 119.99997 * 180.27329 * 25 24 23 41 41 H 1.08007 * 119.99687 * 179.83113 * 26 25 24 42 42 H 1.08005 * 120.00342 * 179.97438 * 27 26 25 43 43 H 1.08005 * 120.00572 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0911 0.0000 4 6 3.5606 0.6605 -0.0006 5 6 4.7280 1.4898 -0.0013 6 7 5.6541 2.1477 -0.0010 7 6 3.5346 -0.7573 -0.0016 8 7 4.6499 -1.6009 -0.0019 9 6 4.4832 -2.9383 -0.0023 10 8 3.3632 -3.4114 -0.0019 11 7 5.5581 -3.7514 -0.0031 12 6 5.3769 -5.2052 -0.0030 13 1 4.4970 -5.4617 0.5870 14 6 6.6115 -5.8730 0.6057 15 6 6.7279 -5.4857 2.0574 16 1 5.9947 -4.8286 2.5013 17 6 7.7708 -5.9694 2.8185 18 7 8.6639 -6.7693 2.2777 19 14 7.9147 -5.4899 4.6181 20 1 7.1771 -6.4722 5.4526 21 1 9.3457 -5.4790 5.0146 22 1 7.3354 -4.1371 4.8177 23 6 5.1908 -5.6883 -1.4183 24 6 5.9423 -5.1394 -2.4404 25 6 5.7747 -5.5857 -3.7380 26 6 4.8491 -6.5743 -4.0148 27 6 4.0938 -7.1195 -2.9935 28 6 4.2645 -6.6764 -1.6952 29 7 2.2814 -1.1364 -0.0071 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.9141 2.1178 0.0004 34 1 5.5436 -1.2236 -0.0018 35 1 6.4517 -3.3741 -0.0038 36 1 6.5158 -6.9559 0.5250 37 1 7.5027 -5.5462 0.0699 38 1 9.3974 -7.1099 2.8133 39 1 6.6632 -4.3646 -2.2247 40 1 6.3650 -5.1600 -4.5360 41 1 4.7162 -6.9211 -5.0290 42 1 3.3703 -7.8917 -3.2097 43 1 3.6741 -7.1020 -0.8972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610973542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:06 Heat of formation + Delta-G solvation = 90.205452 kcal Electronic energy + Delta-G solvation = -28204.424021 eV Core-core repulsion = 24251.027508 eV Total energy + Delta-G solvation = -3953.396513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53472 -41.19993 -39.89489 -37.52010 -37.04765 -36.00519 -34.75505 -33.53556 -32.18899 -31.67175 -31.41092 -30.51037 -27.78194 -26.66739 -23.98929 -23.74256 -23.41721 -23.20458 -21.40109 -21.10004 -20.20058 -19.03015 -18.56739 -17.90354 -17.54901 -16.96596 -16.73127 -16.49831 -16.29546 -16.10684 -15.76949 -15.48694 -15.06751 -14.77345 -14.60769 -14.48181 -14.18389 -14.17018 -14.15464 -13.66700 -13.49694 -13.48181 -13.37336 -13.28062 -12.91725 -12.65676 -12.46839 -12.16085 -11.91537 -11.85816 -11.81398 -11.58666 -11.32301 -11.15766 -10.58759 -10.16517 -9.89441 -9.73616 -9.51667 -9.32467 -8.20245 -6.29786 0.51617 0.55378 0.57982 1.04228 1.09920 1.38685 1.40223 1.50027 1.65758 1.82682 2.19881 2.39596 2.62370 2.89771 3.02768 3.13997 3.31391 3.68399 3.98266 4.02175 4.05165 4.22287 4.32987 4.33593 4.42395 4.55762 4.56720 4.65860 4.67211 4.76743 4.80277 4.85732 5.13697 5.21086 5.25251 5.42670 5.49116 5.60730 5.62643 5.65776 5.67645 5.78849 5.94842 5.97134 6.17017 6.21707 6.53208 6.61529 6.82784 7.02322 7.39002 7.50335 8.90409 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007375 B = 0.003982 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3795.465526 B = 7030.719268 C = 9341.399452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.351 5.351 3 C 0.175 3.825 4 C -0.234 4.234 5 C 0.315 3.685 6 N -0.474 5.474 7 C 0.349 3.651 8 N -0.646 5.646 9 C 0.700 3.300 10 O -0.584 6.584 11 N -0.705 5.705 12 C 0.221 3.779 13 H 0.061 0.939 14 C 0.038 3.962 15 C -0.528 4.528 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.925 5.925 19 Si 0.953 3.047 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.270 1.270 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.130 4.130 29 N -0.323 5.323 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.250 0.750 34 H 0.426 0.574 35 H 0.406 0.594 36 H 0.008 0.992 37 H 0.014 0.986 38 H 0.264 0.736 39 H 0.119 0.881 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.817 14.504 -10.251 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.128 5.128 3 C 0.018 3.982 4 C -0.253 4.253 5 C 0.002 3.998 6 N -0.152 5.152 7 C 0.088 3.912 8 N -0.299 5.299 9 C 0.400 3.600 10 O -0.459 6.459 11 N -0.359 5.359 12 C 0.116 3.884 13 H 0.079 0.921 14 C 0.001 3.999 15 C -0.566 4.566 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.565 5.565 19 Si 0.779 3.221 20 H -0.203 1.203 21 H -0.206 1.206 22 H -0.194 1.194 23 C -0.099 4.099 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.147 4.147 27 C -0.141 4.141 28 C -0.149 4.149 29 N -0.152 5.152 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.157 0.843 33 H 0.266 0.734 34 H 0.264 0.736 35 H 0.242 0.758 36 H 0.027 0.973 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.189 13.846 -10.199 23.618 hybrid contribution 1.609 0.361 1.279 2.087 sum -14.580 14.207 -8.920 22.226 Atomic orbital electron populations 1.22470 0.70058 1.06791 1.05622 1.48665 1.08708 1.02610 1.52785 1.23631 0.86813 0.95867 0.91934 1.15739 0.89947 0.87522 1.32044 1.24416 0.91875 0.92320 0.91236 1.81324 1.10427 1.09725 1.13734 1.19032 0.87447 0.87631 0.97074 1.41908 1.07718 1.03693 1.76585 1.16009 0.85162 0.80882 0.77979 1.90958 1.23719 1.74567 1.56639 1.44939 1.07559 1.05943 1.77428 1.19644 0.99614 0.77768 0.91403 0.92070 1.19143 0.91283 0.94855 0.94657 1.21390 1.09957 1.29159 0.96094 0.92935 1.25728 0.95459 0.94974 1.02413 1.70065 1.14618 1.33891 1.37894 0.85626 0.77258 0.78757 0.80456 1.20304 1.20635 1.19420 1.20448 0.96565 0.97116 0.95748 1.21055 0.99327 1.00382 0.93174 1.21422 0.98996 0.97749 0.96256 1.21457 0.96166 0.96927 1.00148 1.21384 1.00248 1.00415 0.92090 1.21175 0.98156 0.97602 0.97941 1.78063 0.99800 1.06980 1.30354 0.88488 0.89841 0.84344 0.73370 0.73599 0.75846 0.97340 0.96813 0.92731 0.86310 0.83821 0.83181 0.83804 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.44 127.77 1.46 2.05 16 2 N -0.35 -5.85 3.98 -367.70 -1.46 -7.31 16 3 C 0.17 2.04 11.47 84.26 0.97 3.01 16 4 C -0.23 -4.80 5.98 -21.20 -0.13 -4.93 16 5 C 0.32 7.16 15.62 88.33 1.38 8.54 16 6 N -0.47 -12.81 18.54 19.00 0.35 -12.45 16 7 C 0.35 9.98 7.81 133.87 1.05 11.03 16 8 N -0.65 -19.79 5.44 -320.57 -1.74 -21.53 16 9 C 0.70 26.71 8.49 179.06 1.52 28.23 16 10 O -0.58 -26.44 14.73 -3.99 -0.06 -26.50 16 11 N -0.71 -26.70 4.03 -461.41 -1.86 -28.56 16 12 C 0.22 9.50 2.12 44.24 0.09 9.60 16 13 H 0.06 2.94 7.44 -2.39 -0.02 2.92 16 14 C 0.04 1.91 4.50 29.85 0.13 2.05 16 15 C -0.53 -28.81 8.84 25.60 0.23 -28.58 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 17 C 0.01 0.72 5.46 84.65 0.46 1.19 16 18 N -0.92 -54.16 13.29 21.45 0.28 -53.88 16 19 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C -0.10 -3.77 4.91 -19.87 -0.10 -3.87 16 24 C -0.12 -4.13 9.33 22.27 0.21 -3.92 16 25 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 26 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 27 C -0.12 -3.59 10.05 22.27 0.22 -3.37 16 28 C -0.13 -4.69 9.67 22.27 0.22 -4.47 16 29 N -0.32 -9.67 10.72 -53.87 -0.58 -10.25 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.37 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.14 -0.33 8.14 -2.38 -0.02 -0.35 16 33 H 0.25 -0.21 8.06 -2.91 -0.02 -0.23 16 34 H 0.43 10.79 8.63 -92.70 -0.80 9.99 16 35 H 0.41 13.89 8.62 -92.70 -0.80 13.09 16 36 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.12 3.83 7.71 -2.91 -0.02 3.80 16 40 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 41 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 43 H 0.11 4.09 8.04 -2.91 -0.02 4.06 16 Total: -1.00 -82.80 386.76 4.60 -78.20 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.53 Total: 26.19 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 8.16 Total: 10.04 kcal Atomic # 7 Polarization: -128.98 SS G_CDS: -5.01 Total: -133.99 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.06 Total: -26.50 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -82.80 4.60 -78.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610973542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.407 kcal (2) G-P(sol) polarization free energy of solvation -82.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds