Wall clock time and date at job start Tue Mar 31 2020 23:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99909 * 2 1 4 4 H 1.48493 * 109.47208 * 269.99890 * 3 2 1 5 5 H 1.48497 * 109.46886 * 30.00236 * 3 2 1 6 6 H 1.48497 * 109.46907 * 150.00064 * 3 2 1 7 7 C 1.37876 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99897 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.46955 * 111.00099 * 169.99718 * 10 9 7 12 12 C 1.53046 * 109.36651 * 183.19246 * 11 10 9 13 13 N 1.46967 * 109.36181 * 301.59875 * 12 11 10 14 14 C 1.46899 * 110.99600 * 183.18489 * 13 12 11 15 15 C 1.50702 * 109.46747 * 170.00096 * 14 13 12 16 16 O 1.21289 * 120.00020 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99994 * 179.97438 * 15 14 13 18 18 C 1.40027 * 120.00199 * 184.62597 * 17 15 14 19 19 C 1.38862 * 120.03691 * 144.91660 * 18 17 15 20 20 C 1.38130 * 120.00038 * 180.30053 * 19 18 17 21 21 C 1.38432 * 120.06846 * 359.44022 * 20 19 18 22 22 F 1.35095 * 119.96889 * 180.25634 * 21 20 19 23 23 C 1.38677 * 120.06624 * 0.55979 * 21 20 19 24 24 F 1.35099 * 119.99511 * 179.70172 * 23 21 20 25 25 C 1.38319 * 119.99776 * 359.71861 * 23 21 20 26 26 C 1.46958 * 110.87501 * 59.32332 * 13 12 11 27 27 C 1.46954 * 111.00228 * 293.80331 * 10 9 7 28 28 H 0.96997 * 119.99892 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47017 * 59.99908 * 9 7 2 30 30 H 1.08996 * 109.47242 * 300.00082 * 9 7 2 31 31 H 1.09004 * 109.48264 * 63.22681 * 11 10 9 32 32 H 1.08993 * 109.50931 * 303.17525 * 11 10 9 33 33 H 1.09000 * 109.48905 * 181.63977 * 12 11 10 34 34 H 1.08993 * 109.49408 * 61.56832 * 12 11 10 35 35 H 1.09001 * 109.46976 * 50.01075 * 14 13 12 36 36 H 1.08994 * 109.47673 * 290.00171 * 14 13 12 37 37 H 0.97001 * 120.00100 * 4.62819 * 17 15 14 38 38 H 1.07997 * 120.00179 * 0.02562 * 19 18 17 39 39 H 1.08002 * 119.96843 * 179.72068 * 20 19 18 40 40 H 1.08010 * 120.02931 * 180.02562 * 25 23 21 41 41 H 1.08996 * 109.49306 * 60.64784 * 26 13 12 42 42 H 1.09005 * 109.48573 * 180.70738 * 26 13 12 43 43 H 1.09002 * 109.48802 * 296.77528 * 27 10 9 44 44 H 1.08996 * 109.48932 * 56.83800 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5212 -4.8941 0.2365 12 6 2.5568 -6.0188 0.3069 13 7 3.3189 -6.0588 -0.9491 14 6 4.2735 -7.1753 -0.9501 15 6 4.8565 -7.3363 -2.3305 16 8 4.5111 -6.5937 -3.2251 17 7 5.7625 -8.3048 -2.5706 18 6 6.3761 -8.3939 -3.8261 19 6 7.7004 -8.7997 -3.9252 20 6 8.3069 -8.8813 -5.1636 21 6 7.5924 -8.5700 -6.3077 22 9 8.1860 -8.6555 -7.5182 23 6 6.2697 -8.1644 -6.2119 24 9 5.5756 -7.8552 -7.3290 25 6 5.6614 -8.0762 -4.9728 26 6 4.0034 -4.7804 -1.1872 27 6 2.9679 -3.6556 -1.2576 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 0.8251 -5.0912 -0.5788 32 1 0.9740 -4.8441 1.1778 33 1 2.0490 -6.9719 0.4545 34 1 3.2365 -5.8358 1.1391 35 1 3.7597 -8.0929 -0.6635 36 1 5.0739 -6.9698 -0.2394 37 1 5.9894 -8.9402 -1.8737 38 1 8.2576 -9.0472 -3.0338 39 1 9.3383 -9.1926 -5.2397 40 1 4.6311 -7.7608 -4.8977 41 1 4.6996 -4.5832 -0.3720 42 1 4.5504 -4.8306 -2.1287 43 1 2.2881 -3.8387 -2.0898 44 1 3.4756 -2.7025 -1.4053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:32 Heat of formation + Delta-G solvation = -70.623235 kcal Electronic energy + Delta-G solvation = -28720.821974 eV Core-core repulsion = 24309.762220 eV Total energy + Delta-G solvation = -4411.059754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.72455 -48.79711 -40.98695 -39.13192 -38.09232 -35.13860 -34.87535 -32.49464 -31.29276 -30.44170 -30.30233 -28.74386 -26.56309 -24.42557 -23.82031 -23.12353 -22.76853 -21.41090 -20.88473 -19.22733 -18.73833 -18.02516 -17.83029 -16.89147 -16.53080 -16.33148 -16.28235 -15.74222 -15.61590 -15.20733 -14.83194 -14.75333 -14.55794 -14.47229 -14.26908 -14.08777 -13.75668 -13.49163 -13.27805 -13.13997 -12.94183 -12.70327 -12.12019 -12.05288 -11.85628 -11.70349 -11.18317 -10.86211 -10.79033 -10.67675 -10.62891 -10.50400 -10.30102 -10.00591 -9.63798 -9.38536 -9.16132 -8.58975 -8.42235 -8.24663 -7.21438 -6.00629 -4.01933 0.44100 0.59764 2.20493 2.41932 2.98987 3.33584 3.39460 3.43456 3.46729 3.92045 4.01424 4.12882 4.39436 4.44206 4.45135 4.69044 4.88563 4.92123 4.96041 5.03918 5.30102 5.35032 5.37318 5.45852 5.48337 5.52096 5.68028 5.70708 5.78911 5.88564 5.91807 6.13148 6.19348 6.40293 6.42040 6.59242 6.76309 6.81077 7.11112 7.11211 7.35188 7.39734 7.77425 7.82034 8.10770 8.22358 8.57193 9.05471 9.62200 11.10292 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.002208 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.902706 B =12679.291131 C =13693.984934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.540 5.540 11 C 0.056 3.944 12 C 0.063 3.937 13 N -0.523 5.523 14 C 0.039 3.961 15 C 0.513 3.487 16 O -0.488 6.488 17 N -0.678 5.678 18 C 0.173 3.827 19 C -0.129 4.129 20 C -0.105 4.105 21 C 0.046 3.954 22 F -0.130 7.130 23 C 0.091 3.909 24 F -0.124 7.124 25 C -0.133 4.133 26 C 0.053 3.947 27 C 0.070 3.930 28 H 0.261 0.739 29 H -0.008 1.008 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.415 0.585 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.034 0.966 42 H 0.086 0.914 43 H 0.031 0.969 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.958 -24.296 -4.754 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.265 5.265 11 C -0.073 4.073 12 C -0.065 4.065 13 N -0.249 5.249 14 C -0.092 4.092 15 C 0.300 3.700 16 O -0.359 6.359 17 N -0.325 5.325 18 C 0.077 3.923 19 C -0.150 4.150 20 C -0.125 4.125 21 C 0.025 3.975 22 F -0.109 7.109 23 C 0.070 3.930 24 F -0.102 7.102 25 C -0.154 4.154 26 C -0.074 4.074 27 C -0.058 4.058 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.251 0.749 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.182 0.818 41 H 0.053 0.947 42 H 0.104 0.896 43 H 0.049 0.951 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.467 -23.545 -5.407 28.685 hybrid contribution 0.466 0.646 -0.081 0.801 sum 15.933 -22.898 -5.488 28.431 Atomic orbital electron populations 1.69959 1.06054 1.26746 1.51057 1.24992 0.94865 0.99302 0.95476 0.86508 0.79772 0.83143 0.78061 1.20709 1.21273 1.19819 1.21148 0.93432 0.89971 1.49988 0.91960 1.19696 0.90047 0.87284 0.96118 1.62313 1.28149 1.02684 1.33376 1.22048 0.94655 0.89958 1.00627 1.22205 0.96135 0.98955 0.89190 1.61921 1.24836 1.02916 1.35210 1.21908 0.96732 0.98236 0.92328 1.21056 0.77996 0.79237 0.91685 1.90741 1.56895 1.42460 1.45791 1.43625 1.43038 1.33194 1.12685 1.17432 0.91191 0.98657 0.84994 1.20829 0.92461 1.03581 0.98131 1.20836 1.00857 1.00708 0.90062 1.17679 0.90715 1.07176 0.81891 1.91526 1.83414 1.94193 1.41759 1.17495 0.89130 1.02711 0.83668 1.91557 1.78590 1.90443 1.49651 1.21251 1.02866 1.02465 0.88787 1.22440 0.96280 0.87835 1.00856 1.21941 0.95434 0.97273 0.91186 0.92940 0.99030 0.95226 0.94999 0.90828 0.91007 0.94022 0.87582 0.91448 0.74861 0.83837 0.83244 0.81850 0.94736 0.89590 0.95090 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.39 8.47 -34.44 -0.29 -14.68 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 9 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 10 N -0.54 -11.81 4.70 -235.92 -1.11 -12.92 16 11 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 12 C 0.06 0.87 5.61 -3.76 -0.02 0.84 16 13 N -0.52 -7.38 4.45 -235.91 -1.05 -8.43 16 14 C 0.04 0.36 5.45 -4.98 -0.03 0.34 16 15 C 0.51 5.26 7.37 -10.99 -0.08 5.18 16 16 O -0.49 -7.18 11.78 5.55 0.07 -7.12 16 17 N -0.68 -4.51 5.34 -9.85 -0.05 -4.56 16 18 C 0.17 1.40 6.30 -83.67 -0.53 0.87 16 19 C -0.13 -0.74 9.96 -39.39 -0.39 -1.14 16 20 C -0.11 -0.69 10.02 -39.55 -0.40 -1.08 16 21 C 0.05 0.44 7.30 -39.35 -0.29 0.15 16 22 F -0.13 -1.38 17.18 2.25 0.04 -1.34 16 23 C 0.09 1.00 7.30 -39.39 -0.29 0.72 16 24 F -0.12 -1.58 17.18 2.25 0.04 -1.54 16 25 C -0.13 -1.41 8.67 -39.34 -0.34 -1.75 16 26 C 0.05 0.88 5.26 -3.77 -0.02 0.86 16 27 C 0.07 1.44 5.43 -3.77 -0.02 1.42 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.68 8.03 -51.93 -0.42 0.26 16 36 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 37 H 0.41 1.10 8.82 -40.82 -0.36 0.74 16 38 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 39 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.16 2.03 6.23 -52.48 -0.33 1.71 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.44 5.85 -51.93 -0.30 1.13 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.89 6.79 -51.93 -0.35 1.54 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -34.24 367.94 -9.55 -43.78 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.90 Total: -3.29 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.84 Total: -0.70 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -1.47 Total: -52.18 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.07 Total: -7.12 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.24 -9.55 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.841 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds