Wall clock time and date at job start Tue Mar 31 2020 23:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99909 * 2 1 4 4 H 1.48493 * 109.47208 * 269.99890 * 3 2 1 5 5 H 1.48497 * 109.46886 * 30.00236 * 3 2 1 6 6 H 1.48497 * 109.46907 * 150.00064 * 3 2 1 7 7 C 1.37876 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99897 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.46955 * 111.00099 * 169.99718 * 10 9 7 12 12 C 1.53046 * 109.36651 * 183.19246 * 11 10 9 13 13 N 1.46967 * 109.36181 * 301.59875 * 12 11 10 14 14 C 1.46899 * 110.99600 * 183.18489 * 13 12 11 15 15 C 1.50702 * 109.46747 * 170.00096 * 14 13 12 16 16 O 1.21289 * 120.00020 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99994 * 179.97438 * 15 14 13 18 18 C 1.40027 * 120.00199 * 184.62597 * 17 15 14 19 19 C 1.38862 * 120.03691 * 144.91660 * 18 17 15 20 20 C 1.38130 * 120.00038 * 180.30053 * 19 18 17 21 21 C 1.38432 * 120.06846 * 359.44022 * 20 19 18 22 22 F 1.35095 * 119.96889 * 180.25634 * 21 20 19 23 23 C 1.38677 * 120.06624 * 0.55979 * 21 20 19 24 24 F 1.35099 * 119.99511 * 179.70172 * 23 21 20 25 25 C 1.38319 * 119.99776 * 359.71861 * 23 21 20 26 26 C 1.46958 * 110.87501 * 59.32332 * 13 12 11 27 27 C 1.46954 * 111.00228 * 293.80331 * 10 9 7 28 28 H 0.96997 * 119.99892 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47017 * 59.99908 * 9 7 2 30 30 H 1.08996 * 109.47242 * 300.00082 * 9 7 2 31 31 H 1.09004 * 109.48264 * 63.22681 * 11 10 9 32 32 H 1.08993 * 109.50931 * 303.17525 * 11 10 9 33 33 H 1.09000 * 109.48905 * 181.63977 * 12 11 10 34 34 H 1.08993 * 109.49408 * 61.56832 * 12 11 10 35 35 H 1.09001 * 109.46976 * 50.01075 * 14 13 12 36 36 H 1.08994 * 109.47673 * 290.00171 * 14 13 12 37 37 H 0.97001 * 120.00100 * 4.62819 * 17 15 14 38 38 H 1.07997 * 120.00179 * 0.02562 * 19 18 17 39 39 H 1.08002 * 119.96843 * 179.72068 * 20 19 18 40 40 H 1.08010 * 120.02931 * 180.02562 * 25 23 21 41 41 H 1.08996 * 109.49306 * 60.64784 * 26 13 12 42 42 H 1.09005 * 109.48573 * 180.70738 * 26 13 12 43 43 H 1.09002 * 109.48802 * 296.77528 * 27 10 9 44 44 H 1.08996 * 109.48932 * 56.83800 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5212 -4.8941 0.2365 12 6 2.5568 -6.0188 0.3069 13 7 3.3189 -6.0588 -0.9491 14 6 4.2735 -7.1753 -0.9501 15 6 4.8565 -7.3363 -2.3305 16 8 4.5111 -6.5937 -3.2251 17 7 5.7625 -8.3048 -2.5706 18 6 6.3761 -8.3939 -3.8261 19 6 7.7004 -8.7997 -3.9252 20 6 8.3069 -8.8813 -5.1636 21 6 7.5924 -8.5700 -6.3077 22 9 8.1860 -8.6555 -7.5182 23 6 6.2697 -8.1644 -6.2119 24 9 5.5756 -7.8552 -7.3290 25 6 5.6614 -8.0762 -4.9728 26 6 4.0034 -4.7804 -1.1872 27 6 2.9679 -3.6556 -1.2576 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 0.8251 -5.0912 -0.5788 32 1 0.9740 -4.8441 1.1778 33 1 2.0490 -6.9719 0.4545 34 1 3.2365 -5.8358 1.1391 35 1 3.7597 -8.0929 -0.6635 36 1 5.0739 -6.9698 -0.2394 37 1 5.9894 -8.9402 -1.8737 38 1 8.2576 -9.0472 -3.0338 39 1 9.3383 -9.1926 -5.2397 40 1 4.6311 -7.7608 -4.8977 41 1 4.6996 -4.5832 -0.3720 42 1 4.5504 -4.8306 -2.1287 43 1 2.2881 -3.8387 -2.0898 44 1 3.4756 -2.7025 -1.4053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:31 Heat of formation + Delta-G solvation = -96.429478 kcal Electronic energy + Delta-G solvation = -28721.941017 eV Core-core repulsion = 24309.762220 eV Total energy + Delta-G solvation = -4412.178797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.53806 -49.61711 -41.73403 -40.18025 -39.14177 -36.52026 -35.72579 -34.55379 -31.96104 -31.81739 -31.26867 -30.00182 -28.11894 -25.84032 -24.57174 -24.53107 -23.64838 -23.12696 -21.64207 -20.66178 -19.45681 -18.74024 -18.62676 -18.45956 -17.63005 -17.36008 -17.27170 -16.87396 -16.60043 -16.30952 -16.05199 -15.83511 -15.70952 -15.62370 -15.48258 -15.20968 -14.91530 -14.82568 -14.37237 -14.21511 -13.96538 -13.71891 -13.46569 -13.38073 -13.04611 -12.87037 -12.68760 -12.55212 -12.44512 -12.27620 -12.13256 -11.96946 -11.60579 -11.35132 -11.19305 -10.79638 -10.63535 -10.07877 -9.32697 -9.23179 -9.05602 -8.22520 -6.33041 -0.22854 -0.03882 1.39238 1.41041 1.48176 1.52535 1.77413 2.37241 2.38691 2.78114 2.96609 3.09509 3.25820 3.29573 3.52321 3.72380 3.91716 3.97360 4.04328 4.21130 4.22851 4.34610 4.37198 4.42197 4.52834 4.56958 4.70535 4.77088 4.83145 4.89084 4.95860 4.97048 5.02070 5.03319 5.07486 5.19817 5.26346 5.27998 5.61753 5.75351 5.93630 5.99213 6.04926 6.29626 6.42554 6.61525 6.82552 7.12565 7.36641 8.88870 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.002208 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.902706 B =12679.291131 C =13693.984934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.524 4.524 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.540 5.540 11 C 0.049 3.951 12 C 0.075 3.925 13 N -0.545 5.545 14 C 0.042 3.958 15 C 0.511 3.489 16 O -0.542 6.542 17 N -0.655 5.655 18 C 0.167 3.833 19 C -0.103 4.103 20 C -0.091 4.091 21 C 0.032 3.968 22 F -0.141 7.141 23 C 0.059 3.941 24 F -0.146 7.146 25 C -0.151 4.151 26 C 0.073 3.927 27 C 0.073 3.927 28 H 0.265 0.735 29 H -0.046 1.046 30 H 0.008 0.992 31 H 0.014 0.986 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.053 0.947 35 H 0.146 0.854 36 H 0.099 0.901 37 H 0.438 0.562 38 H 0.191 0.809 39 H 0.185 0.815 40 H 0.136 0.864 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.003 0.997 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.365 -26.504 -2.445 32.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.562 4.562 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.265 5.265 11 C -0.080 4.080 12 C -0.052 4.052 13 N -0.271 5.271 14 C -0.088 4.088 15 C 0.300 3.700 16 O -0.418 6.418 17 N -0.304 5.304 18 C 0.072 3.928 19 C -0.123 4.123 20 C -0.110 4.110 21 C 0.011 3.989 22 F -0.120 7.120 23 C 0.038 3.962 24 F -0.125 7.125 25 C -0.173 4.173 26 C -0.055 4.055 27 C -0.056 4.056 28 H 0.074 0.926 29 H -0.029 1.029 30 H 0.027 0.973 31 H 0.032 0.968 32 H 0.096 0.904 33 H 0.130 0.870 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.117 0.883 37 H 0.280 0.720 38 H 0.208 0.792 39 H 0.202 0.798 40 H 0.154 0.846 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.021 0.979 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.910 -25.831 -3.067 32.159 hybrid contribution -0.610 1.235 -0.799 1.592 sum 18.300 -24.596 -3.866 30.900 Atomic orbital electron populations 1.70091 1.07780 1.27949 1.51727 1.25957 0.95793 1.03330 0.94744 0.85359 0.78671 0.78112 0.78347 1.20101 1.20462 1.18610 1.21447 0.93563 0.91086 1.50128 0.91955 1.19356 0.90118 0.89152 0.93219 1.62265 1.27202 1.03286 1.33767 1.22241 0.96039 0.89680 1.00035 1.22135 0.95235 0.98529 0.89320 1.61748 1.26585 1.03010 1.35743 1.22073 0.97034 0.97578 0.92085 1.21367 0.77949 0.79089 0.91639 1.90754 1.58868 1.44778 1.47371 1.43361 1.41697 1.32622 1.12675 1.17599 0.92153 0.98555 0.84542 1.21288 0.91081 1.00549 0.99417 1.21289 1.02055 0.98752 0.88948 1.17993 0.90330 1.07961 0.82603 1.91494 1.83403 1.94369 1.42721 1.17816 0.90189 1.04842 0.83330 1.91485 1.79257 1.90984 1.50758 1.21130 1.02186 1.03979 0.89956 1.22101 0.94581 0.87763 1.01080 1.21881 0.95675 0.98363 0.89658 0.92643 1.02868 0.97347 0.96782 0.90389 0.87026 0.92833 0.83675 0.88315 0.72043 0.79163 0.79755 0.84590 0.93842 0.89954 0.97885 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.91 13.29 21.45 0.28 -57.62 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.52 -30.78 8.47 25.60 0.22 -30.56 16 8 H 0.06 3.58 7.13 -2.91 -0.02 3.56 16 9 C 0.21 11.64 4.72 85.56 0.40 12.04 16 10 N -0.54 -24.41 4.70 -900.32 -4.23 -28.65 16 11 C 0.05 1.75 5.61 86.31 0.48 2.24 16 12 C 0.08 1.85 5.61 86.31 0.48 2.33 16 13 N -0.55 -14.18 4.45 -900.28 -4.00 -18.19 16 14 C 0.04 0.60 5.45 85.56 0.47 1.07 16 15 C 0.51 9.26 7.37 87.66 0.65 9.90 16 16 O -0.54 -16.08 11.78 -3.06 -0.04 -16.12 16 17 N -0.65 -6.35 5.34 -303.48 -1.62 -7.97 16 18 C 0.17 2.30 6.30 38.12 0.24 2.54 16 19 C -0.10 -0.72 9.96 22.39 0.22 -0.49 16 20 C -0.09 -0.87 10.02 22.29 0.22 -0.65 16 21 C 0.03 0.59 7.30 22.42 0.16 0.75 16 22 F -0.14 -2.99 17.18 44.97 0.77 -2.22 16 23 C 0.06 1.37 7.30 22.39 0.16 1.54 16 24 F -0.15 -4.13 17.18 44.97 0.77 -3.35 16 25 C -0.15 -3.32 8.67 22.43 0.19 -3.13 16 26 C 0.07 2.35 5.26 86.31 0.45 2.81 16 27 C 0.07 3.14 5.43 86.31 0.47 3.60 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H -0.05 -2.88 8.12 -2.39 -0.02 -2.90 16 30 H 0.01 0.50 8.03 -2.39 -0.02 0.48 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 33 H 0.11 1.93 8.07 -2.39 -0.02 1.91 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.15 0.98 8.03 -2.39 -0.02 0.96 16 36 H 0.10 0.90 8.12 -2.39 -0.02 0.88 16 37 H 0.44 -0.03 8.82 -92.71 -0.82 -0.85 16 38 H 0.19 -0.39 8.06 -2.91 -0.02 -0.41 16 39 H 0.19 0.50 8.06 -2.91 -0.02 0.47 16 40 H 0.14 3.73 6.23 -2.91 -0.02 3.71 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 2.77 5.85 -2.38 -0.01 2.75 16 43 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.06 2.90 6.79 -2.39 -0.02 2.89 16 Total: -1.00 -82.65 367.94 -0.52 -83.17 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: 0.22 Total: -0.92 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.29 Total: 4.43 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -9.57 Total: -112.43 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.04 Total: -16.12 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.54 Total: -5.57 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -82.65 -0.52 -83.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.262 kcal (2) G-P(sol) polarization free energy of solvation -82.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds