Wall clock time and date at job start Tue Mar 31 2020 23:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48500 * 109.47269 * 269.99524 * 3 2 1 5 5 H 1.48496 * 109.47240 * 29.99710 * 3 2 1 6 6 H 1.48502 * 109.47142 * 149.99476 * 3 2 1 7 7 C 1.37878 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00007 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47260 * 179.97438 * 9 7 2 11 11 C 1.46960 * 110.99712 * 169.99926 * 10 9 7 12 12 C 1.53054 * 109.35891 * 183.18914 * 11 10 9 13 13 N 1.46955 * 109.36543 * 301.59537 * 12 11 10 14 14 C 1.46898 * 111.00032 * 183.19117 * 13 12 11 15 15 C 1.50699 * 109.47154 * 170.00388 * 14 13 12 16 16 O 1.21296 * 120.00051 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00236 * 180.02562 * 15 14 13 18 18 C 1.40148 * 120.00312 * 184.45043 * 17 15 14 19 19 C 1.38794 * 120.05146 * 325.36570 * 18 17 15 20 20 C 1.38143 * 119.97584 * 180.27972 * 19 18 17 21 21 C 1.38480 * 120.09047 * 359.72017 * 20 19 18 22 22 F 1.35100 * 119.94926 * 180.02562 * 21 20 19 23 23 C 1.38456 * 120.10193 * 0.02562 * 21 20 19 24 24 C 1.38308 * 120.02266 * 359.97438 * 23 21 20 25 25 F 1.35101 * 120.04517 * 180.02562 * 24 23 21 26 26 C 1.46960 * 110.87998 * 59.32713 * 13 12 11 27 27 C 1.46956 * 110.99989 * 293.80056 * 10 9 7 28 28 H 0.96992 * 120.00235 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47348 * 59.99614 * 9 7 2 30 30 H 1.09004 * 109.46859 * 299.99603 * 9 7 2 31 31 H 1.08993 * 109.49182 * 63.22597 * 11 10 9 32 32 H 1.08996 * 109.50675 * 303.16279 * 11 10 9 33 33 H 1.09001 * 109.48667 * 181.63114 * 12 11 10 34 34 H 1.08999 * 109.49430 * 61.56751 * 12 11 10 35 35 H 1.09002 * 109.47353 * 50.00162 * 14 13 12 36 36 H 1.08997 * 109.47302 * 290.00266 * 14 13 12 37 37 H 0.97002 * 119.99950 * 4.44253 * 17 15 14 38 38 H 1.08004 * 120.01007 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.95232 * 179.69859 * 20 19 18 40 40 H 1.08000 * 119.99175 * 180.02562 * 23 21 20 41 41 H 1.09000 * 109.48778 * 60.64054 * 26 13 12 42 42 H 1.08994 * 109.48809 * 180.71326 * 26 13 12 43 43 H 1.09007 * 109.48468 * 296.77844 * 27 10 9 44 44 H 1.09001 * 109.49062 * 56.84279 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5209 -4.8940 0.2388 12 6 2.5565 -6.0187 0.3105 13 7 3.3195 -6.0593 -0.9449 14 6 4.2741 -7.1758 -0.9449 15 6 4.8581 -7.3373 -2.3246 16 8 4.5127 -6.5956 -3.2201 17 7 5.7635 -8.3066 -2.5640 18 6 6.3760 -8.3986 -3.8212 19 6 5.6629 -8.0746 -4.9670 20 6 6.2664 -8.1714 -6.2059 21 6 7.5840 -8.5856 -6.3060 22 9 8.1715 -8.6787 -7.5190 23 6 8.3002 -8.9046 -5.1648 24 6 7.7004 -8.8094 -3.9221 25 9 8.3989 -9.1200 -2.8082 26 6 4.0043 -4.7810 -1.1831 27 6 2.9687 -3.6562 -1.2547 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8904 31 1 0.8254 -5.0916 -0.5768 32 1 0.9731 -4.8436 1.1798 33 1 2.0486 -6.9718 0.4582 34 1 3.2356 -5.8353 1.1430 35 1 3.7602 -8.0933 -0.6581 36 1 5.0740 -6.9700 -0.2336 37 1 5.9913 -8.9406 -1.8660 38 1 4.6351 -7.7518 -4.8905 39 1 5.7097 -7.9239 -7.0977 40 1 9.3278 -9.2271 -5.2448 41 1 4.6998 -4.5835 -0.3674 42 1 4.5518 -4.8316 -2.1242 43 1 2.2895 -3.8397 -2.0874 44 1 3.4766 -2.7031 -1.4025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:43 Heat of formation + Delta-G solvation = -71.539541 kcal Electronic energy + Delta-G solvation = -28771.121940 eV Core-core repulsion = 24360.022451 eV Total energy + Delta-G solvation = -4411.099488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.45375 -49.33090 -40.87611 -39.06692 -38.09019 -35.19536 -34.87446 -32.49391 -31.31399 -30.43558 -30.29753 -28.70277 -26.53651 -24.40642 -23.82079 -23.11565 -22.80287 -21.39990 -20.80205 -19.21895 -18.83706 -18.23286 -17.63984 -17.01202 -16.39232 -16.27851 -16.12480 -15.77332 -15.69380 -15.62063 -14.97062 -14.81846 -14.54654 -14.46528 -14.31721 -14.12919 -13.57895 -13.48233 -13.20243 -13.03662 -12.90562 -12.60435 -12.10162 -12.07210 -11.98391 -11.69672 -11.18068 -10.85609 -10.79533 -10.70409 -10.65497 -10.50016 -10.29597 -9.99366 -9.63365 -9.44847 -9.15962 -8.54790 -8.42208 -8.23613 -7.20950 -6.00668 -4.01906 0.44324 0.57888 2.22268 2.44121 2.98521 3.33458 3.39386 3.42298 3.43611 3.89409 3.97130 4.15323 4.34046 4.44245 4.46170 4.70769 4.93830 4.94624 5.00341 5.07000 5.28765 5.32460 5.35095 5.46427 5.53230 5.60514 5.70978 5.72049 5.79993 5.88171 5.92279 6.13566 6.20137 6.39048 6.42320 6.59660 6.76325 6.80762 7.11862 7.12150 7.35505 7.39757 7.78339 7.82264 8.11029 8.22707 8.57452 9.05564 9.62215 11.10271 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002196 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.247526 B =12746.765935 C =13640.529165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.540 5.540 11 C 0.057 3.943 12 C 0.062 3.938 13 N -0.523 5.523 14 C 0.039 3.961 15 C 0.516 3.484 16 O -0.490 6.490 17 N -0.676 5.676 18 C 0.113 3.887 19 C -0.066 4.066 20 C -0.141 4.141 21 C 0.111 3.889 22 F -0.132 7.132 23 C -0.173 4.173 24 C 0.099 3.901 25 F -0.129 7.129 26 C 0.053 3.947 27 C 0.071 3.929 28 H 0.261 0.739 29 H -0.008 1.008 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.414 0.586 38 H 0.163 0.837 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.034 0.966 42 H 0.086 0.914 43 H 0.031 0.969 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.265 -23.571 -7.271 28.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.265 5.265 11 C -0.072 4.072 12 C -0.065 4.065 13 N -0.248 5.248 14 C -0.092 4.092 15 C 0.304 3.696 16 O -0.362 6.362 17 N -0.324 5.324 18 C 0.017 3.983 19 C -0.086 4.086 20 C -0.160 4.160 21 C 0.091 3.909 22 F -0.111 7.111 23 C -0.193 4.193 24 C 0.077 3.923 25 F -0.108 7.108 26 C -0.075 4.075 27 C -0.058 4.058 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.250 0.750 38 H 0.180 0.820 39 H 0.165 0.835 40 H 0.169 0.831 41 H 0.053 0.947 42 H 0.104 0.896 43 H 0.049 0.951 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.837 -22.851 -7.831 27.838 hybrid contribution 0.838 0.486 0.369 1.037 sum 14.675 -22.364 -7.462 27.771 Atomic orbital electron populations 1.69954 1.06054 1.26745 1.51074 1.24988 0.94863 0.99298 0.95482 0.86509 0.79786 0.83142 0.78052 1.20715 1.21277 1.19816 1.21152 0.93440 0.89975 1.49964 0.91959 1.19696 0.90046 0.87286 0.96109 1.62311 1.28106 1.02691 1.33434 1.22047 0.94639 0.89942 1.00617 1.22209 0.96132 0.98955 0.89233 1.61921 1.24764 1.02894 1.35225 1.21905 0.96741 0.98234 0.92353 1.21006 0.77936 0.79002 0.91664 1.90714 1.57221 1.42514 1.45705 1.43525 1.43028 1.33293 1.12536 1.17770 0.90132 1.03476 0.86913 1.21189 1.01635 0.96869 0.88948 1.21206 0.93485 1.01877 0.99433 1.17295 0.91733 1.01834 0.80067 1.91535 1.84129 1.93826 1.41587 1.20848 1.02221 1.06324 0.89955 1.17059 0.88075 1.04307 0.82818 1.91519 1.78400 1.90714 1.50142 1.22445 0.96283 0.87844 1.00882 1.21941 0.95406 0.97260 0.91174 0.92944 0.99033 0.95231 0.94996 0.90835 0.90999 0.94024 0.87562 0.91445 0.74956 0.81954 0.83472 0.83097 0.94748 0.89576 0.95094 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.37 8.47 -34.44 -0.29 -14.67 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 10 N -0.54 -11.83 4.70 -235.91 -1.11 -12.94 16 11 C 0.06 1.02 5.61 -3.76 -0.02 1.00 16 12 C 0.06 0.87 5.61 -3.77 -0.02 0.85 16 13 N -0.52 -7.47 4.45 -235.91 -1.05 -8.52 16 14 C 0.04 0.39 5.45 -4.98 -0.03 0.36 16 15 C 0.52 5.58 7.38 -10.99 -0.08 5.50 16 16 O -0.49 -7.10 11.76 5.54 0.07 -7.03 16 17 N -0.68 -5.52 5.23 -9.79 -0.05 -5.57 16 18 C 0.11 1.03 6.32 -83.55 -0.53 0.51 16 19 C -0.07 -0.62 8.70 -39.41 -0.34 -0.97 16 20 C -0.14 -1.16 10.02 -39.53 -0.40 -1.55 16 21 C 0.11 0.93 7.30 -39.41 -0.29 0.65 16 22 F -0.13 -1.18 17.26 2.25 0.04 -1.15 16 23 C -0.17 -1.35 10.00 -39.48 -0.39 -1.75 16 24 C 0.10 0.85 7.31 -39.26 -0.29 0.56 16 25 F -0.13 -1.10 16.96 2.25 0.04 -1.06 16 26 C 0.05 0.88 5.26 -3.76 -0.02 0.86 16 27 C 0.07 1.45 5.43 -3.77 -0.02 1.43 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.75 8.03 -51.93 -0.42 0.33 16 36 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 37 H 0.41 2.15 8.67 -40.82 -0.35 1.80 16 38 H 0.16 1.71 6.19 -52.48 -0.33 1.38 16 39 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.44 5.85 -51.93 -0.30 1.14 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.88 6.79 -51.93 -0.35 1.53 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -32.71 367.57 -9.55 -42.26 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.90 Total: -1.49 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.84 Total: -0.65 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -1.47 Total: -53.24 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: 0.07 Total: -7.03 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.08 Total: -2.21 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.71 -9.55 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.279 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds