Wall clock time and date at job start Tue Mar 31 2020 23:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48500 * 109.47269 * 269.99524 * 3 2 1 5 5 H 1.48496 * 109.47240 * 29.99710 * 3 2 1 6 6 H 1.48502 * 109.47142 * 149.99476 * 3 2 1 7 7 C 1.37878 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00007 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47260 * 179.97438 * 9 7 2 11 11 C 1.46960 * 110.99712 * 169.99926 * 10 9 7 12 12 C 1.53054 * 109.35891 * 183.18914 * 11 10 9 13 13 N 1.46955 * 109.36543 * 301.59537 * 12 11 10 14 14 C 1.46898 * 111.00032 * 183.19117 * 13 12 11 15 15 C 1.50699 * 109.47154 * 170.00388 * 14 13 12 16 16 O 1.21296 * 120.00051 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00236 * 180.02562 * 15 14 13 18 18 C 1.40148 * 120.00312 * 184.45043 * 17 15 14 19 19 C 1.38794 * 120.05146 * 325.36570 * 18 17 15 20 20 C 1.38143 * 119.97584 * 180.27972 * 19 18 17 21 21 C 1.38480 * 120.09047 * 359.72017 * 20 19 18 22 22 F 1.35100 * 119.94926 * 180.02562 * 21 20 19 23 23 C 1.38456 * 120.10193 * 0.02562 * 21 20 19 24 24 C 1.38308 * 120.02266 * 359.97438 * 23 21 20 25 25 F 1.35101 * 120.04517 * 180.02562 * 24 23 21 26 26 C 1.46960 * 110.87998 * 59.32713 * 13 12 11 27 27 C 1.46956 * 110.99989 * 293.80056 * 10 9 7 28 28 H 0.96992 * 120.00235 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47348 * 59.99614 * 9 7 2 30 30 H 1.09004 * 109.46859 * 299.99603 * 9 7 2 31 31 H 1.08993 * 109.49182 * 63.22597 * 11 10 9 32 32 H 1.08996 * 109.50675 * 303.16279 * 11 10 9 33 33 H 1.09001 * 109.48667 * 181.63114 * 12 11 10 34 34 H 1.08999 * 109.49430 * 61.56751 * 12 11 10 35 35 H 1.09002 * 109.47353 * 50.00162 * 14 13 12 36 36 H 1.08997 * 109.47302 * 290.00266 * 14 13 12 37 37 H 0.97002 * 119.99950 * 4.44253 * 17 15 14 38 38 H 1.08004 * 120.01007 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.95232 * 179.69859 * 20 19 18 40 40 H 1.08000 * 119.99175 * 180.02562 * 23 21 20 41 41 H 1.09000 * 109.48778 * 60.64054 * 26 13 12 42 42 H 1.08994 * 109.48809 * 180.71326 * 26 13 12 43 43 H 1.09007 * 109.48468 * 296.77844 * 27 10 9 44 44 H 1.09001 * 109.49062 * 56.84279 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5209 -4.8940 0.2388 12 6 2.5565 -6.0187 0.3105 13 7 3.3195 -6.0593 -0.9449 14 6 4.2741 -7.1758 -0.9449 15 6 4.8581 -7.3373 -2.3246 16 8 4.5127 -6.5956 -3.2201 17 7 5.7635 -8.3066 -2.5640 18 6 6.3760 -8.3986 -3.8212 19 6 5.6629 -8.0746 -4.9670 20 6 6.2664 -8.1714 -6.2059 21 6 7.5840 -8.5856 -6.3060 22 9 8.1715 -8.6787 -7.5190 23 6 8.3002 -8.9046 -5.1648 24 6 7.7004 -8.8094 -3.9221 25 9 8.3989 -9.1200 -2.8082 26 6 4.0043 -4.7810 -1.1831 27 6 2.9687 -3.6562 -1.2547 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8904 31 1 0.8254 -5.0916 -0.5768 32 1 0.9731 -4.8436 1.1798 33 1 2.0486 -6.9718 0.4582 34 1 3.2356 -5.8353 1.1430 35 1 3.7602 -8.0933 -0.6581 36 1 5.0740 -6.9700 -0.2336 37 1 5.9913 -8.9406 -1.8660 38 1 4.6351 -7.7518 -4.8905 39 1 5.7097 -7.9239 -7.0977 40 1 9.3278 -9.2271 -5.2448 41 1 4.6998 -4.5835 -0.3674 42 1 4.5518 -4.8316 -2.1242 43 1 2.2895 -3.8397 -2.0874 44 1 3.4766 -2.7031 -1.4025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:42 Heat of formation + Delta-G solvation = -94.827575 kcal Electronic energy + Delta-G solvation = -28772.131784 eV Core-core repulsion = 24360.022451 eV Total energy + Delta-G solvation = -4412.109333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.10382 -50.00566 -41.68279 -40.14165 -39.13607 -36.53999 -35.82275 -34.55018 -31.98415 -31.82272 -31.29283 -29.98519 -28.10437 -25.82239 -24.58907 -24.53032 -23.67274 -23.13489 -21.60079 -20.66335 -19.52664 -18.92787 -18.54216 -18.34256 -17.73624 -17.19431 -17.06301 -16.75217 -16.58359 -16.38145 -16.33532 -15.84786 -15.78621 -15.66289 -15.47634 -15.24044 -14.98524 -14.81537 -14.32688 -14.14091 -13.92089 -13.60377 -13.46785 -13.29757 -13.04026 -12.87888 -12.68566 -12.67654 -12.44724 -12.27181 -12.13530 -11.96975 -11.60489 -11.45447 -11.18832 -10.80610 -10.62727 -10.11831 -9.34866 -9.22414 -9.04387 -8.21765 -6.32133 -0.23177 -0.07294 1.39868 1.41420 1.44544 1.53013 1.72485 2.32143 2.39310 2.76312 2.93308 3.10266 3.23610 3.30353 3.50748 3.62922 3.82782 3.97265 4.05980 4.20189 4.20883 4.33423 4.36224 4.40542 4.51689 4.55249 4.64605 4.71009 4.85179 4.88250 4.93481 4.97041 5.02977 5.03482 5.07674 5.20582 5.23440 5.27870 5.62524 5.71956 5.90305 5.97186 6.05267 6.27798 6.34389 6.62495 6.83452 7.04194 7.37496 8.89575 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002196 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.247526 B =12746.765935 C =13640.529165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.208 3.792 10 N -0.543 5.543 11 C 0.050 3.950 12 C 0.074 3.926 13 N -0.540 5.540 14 C 0.042 3.958 15 C 0.516 3.484 16 O -0.534 6.534 17 N -0.661 5.661 18 C 0.104 3.896 19 C -0.078 4.078 20 C -0.139 4.139 21 C 0.105 3.895 22 F -0.136 7.136 23 C -0.167 4.167 24 C 0.099 3.901 25 F -0.128 7.128 26 C 0.071 3.929 27 C 0.074 3.926 28 H 0.265 0.735 29 H -0.044 1.044 30 H 0.008 0.992 31 H 0.017 0.983 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.050 0.950 35 H 0.145 0.855 36 H 0.092 0.908 37 H 0.430 0.570 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.039 0.961 42 H 0.084 0.916 43 H 0.007 0.993 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.409 -25.178 -6.502 30.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.268 5.268 11 C -0.079 4.079 12 C -0.054 4.054 13 N -0.265 5.265 14 C -0.089 4.089 15 C 0.305 3.695 16 O -0.409 6.409 17 N -0.309 5.309 18 C 0.008 3.992 19 C -0.098 4.098 20 C -0.158 4.158 21 C 0.085 3.915 22 F -0.114 7.114 23 C -0.187 4.187 24 C 0.077 3.923 25 F -0.106 7.106 26 C -0.057 4.057 27 C -0.054 4.054 28 H 0.074 0.926 29 H -0.026 1.026 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.130 0.870 34 H 0.069 0.931 35 H 0.163 0.837 36 H 0.110 0.890 37 H 0.269 0.731 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.188 0.812 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.026 0.974 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.015 -24.524 -7.041 30.124 hybrid contribution 0.154 0.895 0.086 0.912 sum 16.169 -23.629 -6.955 29.464 Atomic orbital electron populations 1.70083 1.07742 1.27946 1.51714 1.25937 0.95784 1.03267 0.94755 0.85370 0.78612 0.78176 0.78392 1.19966 1.20498 1.18791 1.21446 0.93534 0.91121 1.50138 0.92043 1.19351 0.90094 0.89062 0.93286 1.62257 1.27233 1.03313 1.33954 1.22223 0.95942 0.89553 1.00134 1.22148 0.95254 0.98685 0.89276 1.61773 1.26227 1.02863 1.35684 1.22051 0.96943 0.97776 0.92103 1.21237 0.77825 0.78751 0.91670 1.90716 1.58872 1.44324 1.46987 1.43343 1.42034 1.32880 1.12679 1.17867 0.90532 1.03678 0.87115 1.21109 1.01288 0.97720 0.89679 1.21340 0.93655 1.01220 0.99604 1.17360 0.91822 1.02197 0.80169 1.91528 1.84156 1.93899 1.41835 1.21047 1.03019 1.05228 0.89404 1.17022 0.87811 1.04408 0.83086 1.91525 1.78308 1.90711 1.50062 1.22127 0.94667 0.87836 1.01057 1.21872 0.95619 0.98206 0.89746 0.92635 1.02637 0.97412 0.96459 0.90441 0.87010 0.93147 0.83716 0.89017 0.73071 0.83324 0.82241 0.81173 0.94265 0.89736 0.97442 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.52 -30.66 8.47 25.60 0.22 -30.44 16 8 H 0.06 3.53 7.13 -2.91 -0.02 3.51 16 9 C 0.21 11.59 4.72 85.56 0.40 11.99 16 10 N -0.54 -24.45 4.70 -900.27 -4.23 -28.68 16 11 C 0.05 1.80 5.61 86.31 0.48 2.28 16 12 C 0.07 1.86 5.61 86.31 0.48 2.34 16 13 N -0.54 -14.29 4.45 -900.28 -4.00 -18.29 16 14 C 0.04 0.66 5.45 85.56 0.47 1.13 16 15 C 0.52 10.11 7.38 87.66 0.65 10.76 16 16 O -0.53 -15.23 11.76 -3.08 -0.04 -15.27 16 17 N -0.66 -9.26 5.23 -303.26 -1.59 -10.85 16 18 C 0.10 1.75 6.32 38.13 0.24 1.99 16 19 C -0.08 -1.43 8.70 22.38 0.19 -1.23 16 20 C -0.14 -2.19 10.02 22.30 0.22 -1.97 16 21 C 0.10 1.62 7.30 22.38 0.16 1.79 16 22 F -0.14 -2.26 17.26 44.97 0.78 -1.49 16 23 C -0.17 -2.29 10.00 22.34 0.22 -2.07 16 24 C 0.10 1.49 7.31 22.48 0.16 1.65 16 25 F -0.13 -1.86 16.96 44.97 0.76 -1.09 16 26 C 0.07 2.32 5.26 86.31 0.45 2.77 16 27 C 0.07 3.16 5.43 86.31 0.47 3.63 16 28 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 29 H -0.04 -2.70 8.12 -2.39 -0.02 -2.72 16 30 H 0.01 0.46 8.03 -2.38 -0.02 0.44 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 33 H 0.11 2.00 8.07 -2.39 -0.02 1.98 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.15 1.26 8.03 -2.39 -0.02 1.24 16 36 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 37 H 0.43 3.09 8.67 -92.71 -0.80 2.28 16 38 H 0.15 3.20 6.19 -2.91 -0.02 3.18 16 39 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 2.82 5.85 -2.39 -0.01 2.81 16 43 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 44 H 0.06 2.89 6.79 -2.39 -0.02 2.87 16 Total: -1.00 -73.96 367.57 -0.47 -74.43 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.24 Total: 6.06 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 5.30 Total: 5.12 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -9.53 Total: -115.03 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.04 Total: -15.27 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 1.54 Total: -2.58 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -73.96 -0.47 -74.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.394 kcal (2) G-P(sol) polarization free energy of solvation -73.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds