Wall clock time and date at job start Tue Mar 31 2020 23:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86798 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47066 * 274.65721 * 3 2 1 5 5 H 1.48500 * 109.47271 * 34.65355 * 3 2 1 6 6 H 1.48495 * 109.47229 * 154.65724 * 3 2 1 7 7 C 1.39895 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00016 * 162.16072 * 7 2 1 9 9 C 1.41217 * 119.99824 * 342.15519 * 7 2 1 10 10 C 1.40838 * 120.17709 * 155.14825 * 9 7 2 11 11 C 1.36428 * 119.80926 * 180.02562 * 10 9 7 12 12 C 1.39318 * 120.18965 * 0.02562 * 11 10 9 13 13 O 1.35677 * 119.81812 * 179.97438 * 12 11 10 14 14 C 1.42903 * 116.99751 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.46769 * 180.02562 * 14 13 12 16 16 H 1.08992 * 109.47534 * 304.99630 * 15 14 13 17 17 O 1.42902 * 109.47360 * 65.00049 * 15 14 13 18 18 C 1.53005 * 109.46743 * 184.99899 * 15 14 13 19 19 N 1.46909 * 109.46896 * 180.02562 * 18 15 14 20 20 C 1.48556 * 110.99952 * 74.58030 * 19 18 15 21 21 C 1.54385 * 104.59404 * 159.04005 * 20 19 18 22 22 C 1.54261 * 105.05875 * 336.14413 * 21 20 19 23 23 F 1.39906 * 110.32244 * 118.89368 * 22 21 20 24 24 C 1.52996 * 110.32747 * 241.00067 * 22 21 20 25 25 O 1.42898 * 109.47241 * 298.55069 * 24 22 21 26 26 C 1.48561 * 110.99687 * 189.99686 * 19 18 15 27 27 C 1.39312 * 120.35956 * 0.25532 * 12 11 10 28 28 C 1.36434 * 120.18662 * 359.48015 * 27 12 11 29 29 H 0.97005 * 119.99382 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.09000 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.90685 * 180.02562 * 11 10 9 32 32 H 1.08996 * 109.47177 * 59.99949 * 14 13 12 33 33 H 1.09005 * 109.46602 * 299.99951 * 14 13 12 34 34 H 0.96699 * 114.00013 * 59.99596 * 17 15 14 35 35 H 1.08994 * 109.47445 * 60.00065 * 18 15 14 36 36 H 1.09006 * 109.46990 * 299.99565 * 18 15 14 37 37 H 1.09001 * 110.41325 * 40.26279 * 20 19 18 38 38 H 1.09000 * 110.41300 * 277.81340 * 20 19 18 39 39 H 1.08994 * 110.32478 * 217.25391 * 21 20 19 40 40 H 1.08995 * 110.32463 * 95.04227 * 21 20 19 41 41 H 1.09008 * 109.47036 * 58.54756 * 24 22 21 42 42 H 1.08997 * 109.47421 * 178.54296 * 24 22 21 43 43 H 0.96703 * 114.00139 * 179.97438 * 25 24 22 44 44 H 1.09005 * 110.40831 * 82.18275 * 26 19 18 45 45 H 1.08998 * 110.51566 * 319.79224 * 26 19 18 46 46 H 1.08005 * 119.90377 * 179.72733 * 27 12 11 47 47 H 1.08000 * 120.09803 * 180.26024 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1032 -1.3955 5 1 1.4931 2.6223 0.7961 6 1 3.5861 1.4136 0.5993 7 6 2.0082 -1.2116 -0.0005 8 1 3.0492 -1.2340 -0.2871 9 6 1.3529 -2.4052 0.3737 10 6 1.8223 -3.6475 -0.0953 11 6 1.1833 -4.7960 0.2705 12 6 0.0690 -4.7423 1.1051 13 8 -0.5611 -5.8891 1.4638 14 6 -1.6975 -5.7641 2.3211 15 6 -2.2700 -7.1521 2.6146 16 1 -2.4878 -7.6613 1.6759 17 8 -1.3167 -7.9130 3.3592 18 6 -3.5577 -7.0109 3.4289 19 7 -4.1072 -8.3438 3.7112 20 6 -3.3160 -9.0340 4.7622 21 6 -4.2693 -10.1118 5.3219 22 6 -5.6882 -9.5929 5.0098 23 9 -6.3606 -10.4903 4.1732 24 6 -6.4747 -9.3843 6.3054 25 8 -6.6049 -10.6320 6.9898 26 6 -5.4728 -8.2454 4.2879 27 6 -0.4051 -3.5172 1.5687 28 6 0.2257 -2.3598 1.2166 29 1 -0.4849 0.8401 -0.0004 30 1 2.6857 -3.6907 -0.7427 31 1 1.5421 -5.7495 -0.0879 32 1 -2.4564 -5.1536 1.8317 33 1 -1.3971 -5.2902 3.2557 34 1 -1.0755 -7.5184 4.2084 35 1 -4.2849 -6.4306 2.8610 36 1 -3.3399 -6.5017 4.3678 37 1 -3.0327 -8.3326 5.5470 38 1 -2.4305 -9.4983 4.3281 39 1 -4.1327 -10.2160 6.3982 40 1 -4.0968 -11.0655 4.8233 41 1 -5.9455 -8.6746 6.9415 42 1 -7.4648 -8.9936 6.0706 43 1 -7.0937 -10.5749 7.8222 44 1 -6.2111 -8.1158 3.4965 45 1 -5.5290 -7.4204 4.9980 46 1 -1.2722 -3.4838 2.2118 47 1 -0.1407 -1.4111 1.5802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619816227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:59 Heat of formation + Delta-G solvation = -158.802720 kcal Electronic energy + Delta-G solvation = -28823.677545 eV Core-core repulsion = 24499.961595 eV Total energy + Delta-G solvation = -4323.715950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -47.87393 -39.67397 -38.79228 -37.54206 -36.77712 -35.93056 -33.35991 -32.70809 -30.36731 -29.76609 -29.61880 -28.90903 -26.45381 -24.97108 -24.30749 -22.34715 -21.63192 -20.96996 -20.55483 -20.35781 -17.93004 -17.38355 -17.16306 -17.14758 -16.65723 -16.32386 -15.93580 -15.47584 -15.20498 -15.15357 -14.85443 -14.48203 -14.27988 -14.04332 -13.93204 -13.66913 -13.50007 -13.04039 -12.76738 -12.67396 -12.44084 -12.32643 -12.07693 -11.86402 -11.74697 -11.49647 -11.45120 -11.29696 -11.13744 -11.04573 -10.94070 -10.83754 -10.63762 -10.58060 -10.02602 -9.87096 -9.81040 -9.38385 -9.03242 -8.86696 -7.67637 -7.02764 -6.75122 -4.27018 2.74790 2.94575 3.06200 3.10508 3.14427 3.19747 3.55190 3.86191 3.93297 4.03004 4.14525 4.18081 4.37267 4.45634 4.59715 4.64867 4.75160 4.79457 4.85981 4.99706 5.03827 5.10642 5.17395 5.28460 5.34165 5.41616 5.61588 5.63075 5.65780 5.75072 5.84443 6.05510 6.07543 6.27019 6.39308 6.55244 6.70263 6.87427 7.00690 7.04851 7.25964 7.38856 7.53997 7.59666 7.88201 7.98347 8.13585 8.42731 8.63150 8.88259 8.97340 10.19784 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.001758 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.174623 B =15927.315732 C =16497.979319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.195 4.195 11 C -0.112 4.112 12 C -0.010 4.010 13 O -0.317 6.317 14 C 0.040 3.960 15 C 0.119 3.881 16 H 0.115 0.885 17 O -0.546 6.546 18 C 0.015 3.985 19 N -0.497 5.497 20 C 0.030 3.970 21 C -0.140 4.140 22 C 0.120 3.880 23 F -0.193 7.193 24 C 0.061 3.939 25 O -0.563 6.563 26 C 0.013 3.987 27 C -0.175 4.175 28 C -0.135 4.135 29 H 0.279 0.721 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.367 0.633 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.384 0.616 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 -12.822 14.472 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.215 4.215 11 C -0.131 4.131 12 C -0.053 4.053 13 O -0.233 6.233 14 C -0.038 4.038 15 C 0.059 3.941 16 H 0.132 0.868 17 O -0.350 6.350 18 C -0.113 4.113 19 N -0.220 5.220 20 C -0.098 4.098 21 C -0.178 4.178 22 C 0.101 3.899 23 F -0.174 7.174 24 C -0.018 4.018 25 O -0.369 6.369 26 C -0.116 4.116 27 C -0.194 4.194 28 C -0.154 4.154 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.213 0.787 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.231 0.769 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.110 0.890 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.945 -13.751 12.821 22.826 hybrid contribution -0.342 2.266 1.690 2.848 sum -13.287 -11.485 14.511 22.782 Atomic orbital electron populations 1.69845 1.07536 1.29005 1.36315 1.25879 0.94711 1.01234 0.92368 0.86335 0.80747 0.80820 0.79020 1.19621 1.20154 1.18475 1.19467 0.98098 0.91200 1.40517 0.90481 1.17604 0.91873 0.92201 0.89886 1.20610 1.03206 0.92238 1.05424 1.19627 0.95587 0.97718 1.00124 1.18597 0.97688 0.83816 1.05212 1.85869 1.42054 1.30616 1.64741 1.23079 0.89295 0.96923 0.94459 1.21869 0.85686 0.90981 0.95577 0.86759 1.86668 1.62564 1.50432 1.35340 1.22919 0.98094 0.90279 1.00030 1.65341 1.00874 1.17412 1.38405 1.23411 0.98024 0.95704 0.92615 1.22938 0.91868 1.00578 1.02437 1.21598 0.92357 0.88527 0.87397 1.92896 1.81814 1.69560 1.73082 1.22701 0.99699 0.86715 0.92646 1.86521 1.79459 1.30972 1.39906 1.23666 0.93897 0.94978 0.99018 1.20582 1.01313 0.92960 1.04496 1.20923 0.98528 0.96428 0.99531 0.91040 0.88172 0.88439 0.92272 0.93099 0.78665 0.89184 0.93678 0.93705 0.87202 0.89598 0.89277 0.91788 0.92263 0.76888 0.88299 0.92003 0.88981 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.60 10.97 55.55 0.61 -19.99 16 2 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.56 29.60 -169.99 -5.03 13.52 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.24 9.04 -37.83 -0.34 -12.58 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.09 2.31 5.57 -106.80 -0.60 1.71 16 10 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 11 C -0.11 -2.62 9.92 -39.83 -0.40 -3.02 16 12 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 13 O -0.32 -6.43 10.09 -23.59 -0.24 -6.67 16 14 C 0.04 0.60 4.36 37.15 0.16 0.76 16 15 C 0.12 1.46 3.52 -26.73 -0.09 1.37 16 16 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 17 O -0.55 -6.82 10.53 -40.09 -0.42 -7.25 16 18 C 0.02 0.15 4.68 -3.82 -0.02 0.13 16 19 N -0.50 -4.89 5.34 -229.96 -1.23 -6.12 16 20 C 0.03 0.26 5.27 -2.18 -0.01 0.25 16 21 C -0.14 -1.21 6.28 -25.35 -0.16 -1.37 16 22 C 0.12 1.06 1.51 -89.24 -0.13 0.93 16 23 F -0.19 -2.35 16.82 2.25 0.04 -2.31 16 24 C 0.06 0.38 5.98 37.16 0.22 0.61 16 25 O -0.56 -3.98 13.17 -35.23 -0.46 -4.44 16 26 C 0.01 0.10 5.80 -2.18 -0.01 0.09 16 27 C -0.17 -4.04 8.96 -39.83 -0.36 -4.40 16 28 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 29 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 30 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 31 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 32 H 0.06 0.87 7.64 -51.93 -0.40 0.48 16 33 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 34 H 0.37 3.39 8.96 45.56 0.41 3.80 16 35 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.05 0.37 7.77 -51.93 -0.40 -0.04 16 37 H 0.04 0.33 7.75 -51.93 -0.40 -0.07 16 38 H 0.11 1.11 6.60 -51.93 -0.34 0.77 16 39 H 0.09 0.64 7.52 -51.93 -0.39 0.25 16 40 H 0.09 0.88 8.04 -51.93 -0.42 0.47 16 41 H 0.06 0.28 8.13 -51.92 -0.42 -0.14 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.38 0.83 9.12 45.56 0.42 1.24 16 44 H 0.10 0.82 8.12 -51.93 -0.42 0.39 16 45 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 46 H 0.09 1.87 6.27 -52.48 -0.33 1.54 16 47 H 0.12 3.16 6.18 -52.49 -0.32 2.84 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -32.07 383.09 -9.25 -41.32 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.48 Total: 9.41 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -2.81 Total: -23.25 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: -0.62 Total: -26.11 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -1.12 Total: -18.36 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.07 -9.25 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619816227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.483 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds