Wall clock time and date at job start Tue Mar 31 2020 23:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86798 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47066 * 274.65721 * 3 2 1 5 5 H 1.48500 * 109.47271 * 34.65355 * 3 2 1 6 6 H 1.48495 * 109.47229 * 154.65724 * 3 2 1 7 7 C 1.39895 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00016 * 162.16072 * 7 2 1 9 9 C 1.41217 * 119.99824 * 342.15519 * 7 2 1 10 10 C 1.40838 * 120.17709 * 155.14825 * 9 7 2 11 11 C 1.36428 * 119.80926 * 180.02562 * 10 9 7 12 12 C 1.39318 * 120.18965 * 0.02562 * 11 10 9 13 13 O 1.35677 * 119.81812 * 179.97438 * 12 11 10 14 14 C 1.42903 * 116.99751 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.46769 * 180.02562 * 14 13 12 16 16 H 1.08992 * 109.47534 * 304.99630 * 15 14 13 17 17 O 1.42902 * 109.47360 * 65.00049 * 15 14 13 18 18 C 1.53005 * 109.46743 * 184.99899 * 15 14 13 19 19 N 1.46909 * 109.46896 * 180.02562 * 18 15 14 20 20 C 1.48556 * 110.99952 * 74.58030 * 19 18 15 21 21 C 1.54385 * 104.59404 * 159.04005 * 20 19 18 22 22 C 1.54261 * 105.05875 * 336.14413 * 21 20 19 23 23 F 1.39906 * 110.32244 * 118.89368 * 22 21 20 24 24 C 1.52996 * 110.32747 * 241.00067 * 22 21 20 25 25 O 1.42898 * 109.47241 * 298.55069 * 24 22 21 26 26 C 1.48561 * 110.99687 * 189.99686 * 19 18 15 27 27 C 1.39312 * 120.35956 * 0.25532 * 12 11 10 28 28 C 1.36434 * 120.18662 * 359.48015 * 27 12 11 29 29 H 0.97005 * 119.99382 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.09000 * 0.02562 * 10 9 7 31 31 H 1.08004 * 119.90685 * 180.02562 * 11 10 9 32 32 H 1.08996 * 109.47177 * 59.99949 * 14 13 12 33 33 H 1.09005 * 109.46602 * 299.99951 * 14 13 12 34 34 H 0.96699 * 114.00013 * 59.99596 * 17 15 14 35 35 H 1.08994 * 109.47445 * 60.00065 * 18 15 14 36 36 H 1.09006 * 109.46990 * 299.99565 * 18 15 14 37 37 H 1.09001 * 110.41325 * 40.26279 * 20 19 18 38 38 H 1.09000 * 110.41300 * 277.81340 * 20 19 18 39 39 H 1.08994 * 110.32478 * 217.25391 * 21 20 19 40 40 H 1.08995 * 110.32463 * 95.04227 * 21 20 19 41 41 H 1.09008 * 109.47036 * 58.54756 * 24 22 21 42 42 H 1.08997 * 109.47421 * 178.54296 * 24 22 21 43 43 H 0.96703 * 114.00139 * 179.97438 * 25 24 22 44 44 H 1.09005 * 110.40831 * 82.18275 * 26 19 18 45 45 H 1.08998 * 110.51566 * 319.79224 * 26 19 18 46 46 H 1.08005 * 119.90377 * 179.72733 * 27 12 11 47 47 H 1.08000 * 120.09803 * 180.26024 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1032 -1.3955 5 1 1.4931 2.6223 0.7961 6 1 3.5861 1.4136 0.5993 7 6 2.0082 -1.2116 -0.0005 8 1 3.0492 -1.2340 -0.2871 9 6 1.3529 -2.4052 0.3737 10 6 1.8223 -3.6475 -0.0953 11 6 1.1833 -4.7960 0.2705 12 6 0.0690 -4.7423 1.1051 13 8 -0.5611 -5.8891 1.4638 14 6 -1.6975 -5.7641 2.3211 15 6 -2.2700 -7.1521 2.6146 16 1 -2.4878 -7.6613 1.6759 17 8 -1.3167 -7.9130 3.3592 18 6 -3.5577 -7.0109 3.4289 19 7 -4.1072 -8.3438 3.7112 20 6 -3.3160 -9.0340 4.7622 21 6 -4.2693 -10.1118 5.3219 22 6 -5.6882 -9.5929 5.0098 23 9 -6.3606 -10.4903 4.1732 24 6 -6.4747 -9.3843 6.3054 25 8 -6.6049 -10.6320 6.9898 26 6 -5.4728 -8.2454 4.2879 27 6 -0.4051 -3.5172 1.5687 28 6 0.2257 -2.3598 1.2166 29 1 -0.4849 0.8401 -0.0004 30 1 2.6857 -3.6907 -0.7427 31 1 1.5421 -5.7495 -0.0879 32 1 -2.4564 -5.1536 1.8317 33 1 -1.3971 -5.2902 3.2557 34 1 -1.0755 -7.5184 4.2084 35 1 -4.2849 -6.4306 2.8610 36 1 -3.3399 -6.5017 4.3678 37 1 -3.0327 -8.3326 5.5470 38 1 -2.4305 -9.4983 4.3281 39 1 -4.1327 -10.2160 6.3982 40 1 -4.0968 -11.0655 4.8233 41 1 -5.9455 -8.6746 6.9415 42 1 -7.4648 -8.9936 6.0706 43 1 -7.0937 -10.5749 7.8222 44 1 -6.2111 -8.1158 3.4965 45 1 -5.5290 -7.4204 4.9980 46 1 -1.2722 -3.4838 2.2118 47 1 -0.1407 -1.4111 1.5802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619816227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:58 Heat of formation + Delta-G solvation = -183.351675 kcal Electronic energy + Delta-G solvation = -28824.742067 eV Core-core repulsion = 24499.961595 eV Total energy + Delta-G solvation = -4324.780473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.65980 -40.76245 -40.07186 -38.58361 -37.78051 -37.10004 -35.20303 -33.47255 -31.64012 -31.43481 -30.62991 -30.26923 -27.42504 -26.47524 -25.28867 -23.50248 -22.79727 -22.25177 -22.02115 -21.22852 -19.27071 -18.66452 -18.38152 -17.86530 -17.83091 -17.27462 -16.98069 -16.72539 -16.31497 -15.87911 -15.80827 -15.68622 -15.59400 -15.38913 -14.86877 -14.81393 -14.43845 -14.26221 -14.18563 -13.79873 -13.63465 -13.57082 -13.28957 -13.17320 -13.02341 -12.75098 -12.73212 -12.54457 -12.30961 -12.17697 -11.98667 -11.85416 -11.69257 -11.58836 -11.53482 -11.22126 -11.08591 -10.86563 -10.84196 -9.56952 -9.52449 -8.90566 -8.60443 -6.22495 0.93762 1.04324 1.39835 1.49367 1.55694 2.22904 2.30011 2.72187 2.84290 3.05240 3.41234 3.45342 3.50042 3.54103 3.70256 3.92444 3.96416 3.98634 4.04354 4.18078 4.25811 4.27857 4.29582 4.39022 4.39255 4.48009 4.48632 4.57783 4.62263 4.78995 4.88226 4.97882 4.99488 5.03527 5.09652 5.15292 5.19196 5.36959 5.52486 5.66061 5.74752 5.88316 5.96981 6.06200 6.23999 6.56203 6.77551 6.80974 6.82236 6.95203 7.10612 8.36597 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.001758 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.174623 B =15927.315732 C =16497.979319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.500 4.500 8 H 0.075 0.925 9 C 0.053 3.947 10 C -0.205 4.205 11 C -0.124 4.124 12 C 0.000 4.000 13 O -0.329 6.329 14 C 0.032 3.968 15 C 0.129 3.871 16 H 0.093 0.907 17 O -0.560 6.560 18 C 0.025 3.975 19 N -0.521 5.521 20 C 0.035 3.965 21 C -0.137 4.137 22 C 0.106 3.894 23 F -0.218 7.218 24 C 0.064 3.936 25 O -0.587 6.587 26 C 0.017 3.983 27 C -0.174 4.174 28 C -0.154 4.154 29 H 0.287 0.713 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.382 0.618 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.403 0.597 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.121 0.879 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.949 -12.164 16.263 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.530 4.530 8 H 0.093 0.907 9 C 0.051 3.949 10 C -0.225 4.225 11 C -0.143 4.143 12 C -0.044 4.044 13 O -0.245 6.245 14 C -0.044 4.044 15 C 0.069 3.931 16 H 0.111 0.889 17 O -0.366 6.366 18 C -0.103 4.103 19 N -0.245 5.245 20 C -0.093 4.093 21 C -0.176 4.176 22 C 0.088 3.912 23 F -0.199 7.199 24 C -0.014 4.014 25 O -0.397 6.397 26 C -0.111 4.111 27 C -0.193 4.193 28 C -0.174 4.174 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.254 0.746 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.139 0.861 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.830 -13.116 14.641 24.035 hybrid contribution -0.150 1.864 1.176 2.209 sum -13.979 -11.252 15.818 23.921 Atomic orbital electron populations 1.69888 1.08892 1.30388 1.36647 1.26712 0.95508 1.04384 0.91353 0.85214 0.79193 0.76137 0.79283 1.18922 1.19010 1.18357 1.19708 0.98326 0.92426 1.42493 0.90718 1.17972 0.92918 0.93129 0.90926 1.20790 1.03708 0.92296 1.05675 1.19898 0.95949 0.98098 1.00333 1.18708 0.97178 0.84602 1.03891 1.85869 1.43590 1.29391 1.65671 1.23452 0.87713 0.99120 0.94134 1.21709 0.86913 0.88890 0.95549 0.88867 1.86647 1.62845 1.50785 1.36341 1.22783 0.96477 0.90501 1.00559 1.65251 1.01928 1.17756 1.39590 1.23338 0.97200 0.95945 0.92777 1.22898 0.92132 0.99577 1.02965 1.21961 0.92540 0.88305 0.88443 1.92842 1.82342 1.70615 1.74097 1.22713 1.00193 0.86859 0.91652 1.86466 1.80097 1.31753 1.41333 1.23661 0.92607 0.95419 0.99407 1.20806 1.01829 0.92207 1.04451 1.20913 0.99169 0.96865 1.00411 0.90236 0.87396 0.86627 0.91723 0.91574 0.76947 0.88408 0.91470 0.91589 0.88977 0.88252 0.91448 0.89214 0.91244 0.74589 0.88777 0.89243 0.86095 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.22 10.97 21.82 0.24 -42.98 16 2 C 0.03 1.72 5.13 85.24 0.44 2.16 16 3 Si 0.98 38.02 29.60 68.60 2.03 40.05 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.50 -27.07 9.04 23.40 0.21 -26.86 16 8 H 0.07 3.91 7.91 -2.91 -0.02 3.88 16 9 C 0.05 2.87 5.57 -21.28 -0.12 2.75 16 10 C -0.21 -10.30 9.74 22.48 0.22 -10.09 16 11 C -0.12 -5.80 9.92 22.11 0.22 -5.58 16 12 C 0.00 0.00 6.71 22.79 0.15 0.16 16 13 O -0.33 -12.90 10.09 -85.30 -0.86 -13.76 16 14 C 0.03 0.90 4.36 71.98 0.31 1.21 16 15 C 0.13 2.96 3.52 30.59 0.11 3.07 16 16 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 17 O -0.56 -13.08 10.53 -144.34 -1.52 -14.60 16 18 C 0.03 0.41 4.68 86.30 0.40 0.81 16 19 N -0.52 -9.26 5.34 -881.45 -4.71 -13.96 16 20 C 0.03 0.55 5.27 86.45 0.46 1.00 16 21 C -0.14 -2.22 6.28 31.49 0.20 -2.03 16 22 C 0.11 1.72 1.51 -9.90 -0.01 1.70 16 23 F -0.22 -5.27 16.82 44.97 0.76 -4.51 16 24 C 0.06 0.64 5.98 71.98 0.43 1.07 16 25 O -0.59 -7.19 13.17 -148.98 -1.96 -9.15 16 26 C 0.02 0.24 5.80 86.45 0.50 0.74 16 27 C -0.17 -7.94 8.96 22.11 0.20 -7.74 16 28 C -0.15 -8.04 8.64 22.48 0.19 -7.84 16 29 H 0.29 13.43 8.30 -92.70 -0.77 12.66 16 30 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 31 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 32 H 0.06 1.76 7.64 -2.39 -0.02 1.74 16 33 H 0.07 1.67 7.66 -2.38 -0.02 1.65 16 34 H 0.38 6.15 8.96 -74.06 -0.66 5.49 16 35 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 36 H 0.07 0.81 7.77 -2.38 -0.02 0.79 16 37 H 0.07 0.75 7.75 -2.39 -0.02 0.73 16 38 H 0.09 1.78 6.60 -2.39 -0.02 1.77 16 39 H 0.10 1.30 7.52 -2.39 -0.02 1.28 16 40 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 41 H 0.09 0.43 8.13 -2.38 -0.02 0.41 16 42 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.40 0.89 9.12 -74.05 -0.68 0.21 16 44 H 0.09 1.39 8.12 -2.38 -0.02 1.37 16 45 H 0.09 0.75 7.71 -2.39 -0.02 0.73 16 46 H 0.12 4.67 6.27 -2.91 -0.02 4.65 16 47 H 0.11 5.79 6.18 -2.91 -0.02 5.77 16 Total: -1.00 -70.52 383.09 -2.44 -72.96 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.33 Total: 31.40 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 3.91 Total: -45.45 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -4.47 Total: -56.94 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -4.34 Total: -37.51 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.76 Total: -4.51 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -70.52 -2.44 -72.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619816227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.391 kcal (2) G-P(sol) polarization free energy of solvation -70.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds