Wall clock time and date at job start Tue Mar 31 2020 22:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47144 * 2 1 4 4 C 1.36319 * 126.28072 * 264.95954 * 3 2 1 5 5 N 1.30135 * 109.98230 * 180.02562 * 4 3 2 6 6 C 1.35466 * 109.44285 * 0.02562 * 5 4 3 7 7 C 1.37199 * 126.27827 * 84.99484 * 3 2 1 8 8 N 1.32888 * 134.92711 * 359.96832 * 7 3 2 9 9 C 1.31645 * 120.64440 * 179.97438 * 8 7 3 10 10 N 1.32037 * 122.46752 * 0.02562 * 9 8 7 11 11 C 1.32916 * 121.18771 * 359.97438 * 10 9 8 12 12 N 1.38396 * 120.77058 * 179.97438 * 11 10 9 13 13 C 1.46493 * 119.99871 * 0.02562 * 12 11 10 14 14 C 1.50703 * 109.47159 * 180.02562 * 13 12 11 15 15 C 1.38305 * 119.93080 * 269.72814 * 14 13 12 16 16 C 1.38096 * 120.06785 * 179.71889 * 15 14 13 17 17 C 1.38880 * 119.93090 * 0.57185 * 16 15 14 18 18 O 1.35753 * 120.07025 * 179.67594 * 17 16 15 19 19 C 1.34825 * 117.00276 * 174.48501 * 18 17 16 20 20 H 1.08007 * 119.99549 * 5.06228 * 19 18 17 21 21 C 1.38655 * 120.00255 * 185.05817 * 19 18 17 22 22 N 1.31554 * 119.99806 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99763 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47173 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46906 * 120.00451 * 23 21 19 26 26 H 1.48503 * 109.46784 * 239.99801 * 23 21 19 27 27 C 1.38875 * 119.86203 * 359.70569 * 17 16 15 28 28 C 1.38099 * 119.93202 * 359.97438 * 27 17 16 29 29 H 1.09004 * 109.46783 * 60.00217 * 1 2 3 30 30 H 1.08996 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47476 * 300.00181 * 1 2 3 32 32 H 1.08997 * 109.47476 * 239.99819 * 2 1 3 33 33 H 1.09004 * 109.46783 * 119.99783 * 2 1 3 34 34 H 1.07998 * 125.00750 * 359.97438 * 4 3 2 35 35 H 1.08006 * 118.76670 * 179.97438 * 9 8 7 36 36 H 0.97001 * 119.99653 * 180.02562 * 12 11 10 37 37 H 1.08999 * 109.47588 * 299.99866 * 13 12 11 38 38 H 1.08999 * 109.47457 * 60.00155 * 13 12 11 39 39 H 1.08000 * 119.96568 * 359.97438 * 15 14 13 40 40 H 1.08007 * 120.03400 * 180.27321 * 16 15 14 41 41 H 0.97004 * 119.99780 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.03813 * 179.97438 * 27 17 16 43 43 H 1.08000 * 119.96600 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3782 2.1095 -1.0947 5 7 2.7649 3.2976 -0.7308 6 6 2.6785 3.4070 0.6167 7 6 2.1980 2.1787 1.1018 8 7 2.0217 2.0255 2.4100 9 6 2.2925 3.0082 3.2432 10 7 2.7452 4.1793 2.8347 11 6 2.9527 4.4254 1.5451 12 7 3.4270 5.6563 1.1265 13 6 3.7070 6.7060 2.1091 14 6 4.2079 7.9376 1.3996 15 6 5.5636 8.1064 1.1839 16 6 6.0252 9.2310 0.5289 17 6 5.1276 10.1989 0.0971 18 8 5.5789 11.3087 -0.5413 19 6 4.6495 12.1517 -1.0345 20 1 3.6018 11.9725 -0.8425 21 6 5.0386 13.2486 -1.7881 22 7 6.3146 13.4665 -2.0222 23 14 3.7508 14.4169 -2.4708 24 1 2.3987 13.9534 -2.0680 25 1 3.9861 15.7814 -1.9341 26 1 3.8439 14.4450 -3.9526 27 6 3.7675 10.0292 0.3203 28 6 3.3115 8.8992 0.9701 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3479 1.7528 -2.1136 35 1 2.1377 2.8507 4.3004 36 1 3.5740 5.8238 0.1825 37 1 2.7941 6.9470 2.6537 38 1 4.4657 6.3557 2.8090 39 1 6.2615 7.3558 1.5244 40 1 7.0837 9.3601 0.3568 41 1 6.5868 14.2337 -2.5498 42 1 3.0670 10.7803 -0.0139 43 1 2.2538 8.7665 1.1436 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727826269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:07 Heat of formation + Delta-G solvation = 101.470997 kcal Electronic energy + Delta-G solvation = -27195.291062 eV Core-core repulsion = 23242.383060 eV Total energy + Delta-G solvation = -3952.908002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.62510 -39.49614 -39.08742 -37.22145 -35.91991 -35.10762 -32.66017 -32.21981 -30.68063 -30.36031 -30.23482 -28.82948 -25.93779 -24.99449 -24.37495 -23.91062 -22.99484 -22.03950 -20.81486 -20.59298 -18.60117 -18.11488 -18.05553 -17.15181 -16.91331 -16.34334 -15.78925 -15.00992 -14.95423 -14.72633 -14.57433 -14.31970 -14.21348 -14.13242 -13.92608 -13.67692 -13.50519 -13.12961 -12.85379 -12.77314 -12.59319 -12.33062 -11.88516 -11.76572 -11.55543 -11.39730 -11.35995 -10.93313 -10.77691 -10.66912 -10.46695 -10.41641 -9.69781 -9.40855 -9.38348 -9.11188 -8.89893 -8.26811 -7.77080 -7.32102 -6.51964 -4.10619 0.80226 1.34125 2.02096 2.11632 2.15309 2.58896 3.07405 3.10525 3.16234 3.25037 3.89228 3.89462 3.91476 3.99348 4.15743 4.37646 4.52312 4.56104 4.62857 4.76400 4.89077 5.03172 5.10972 5.17370 5.18848 5.25053 5.44014 5.58303 5.64019 5.67459 5.71059 5.82451 5.93132 6.13894 6.32522 6.36537 6.57805 6.61561 6.81777 6.85461 6.96003 7.05713 7.16689 7.28803 7.36712 7.55170 7.61665 7.73276 7.93019 8.29312 8.93542 9.61847 10.65643 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.001985 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.898208 B =14102.643225 C =14766.111227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.475 5.475 4 C 0.238 3.762 5 N -0.457 5.457 6 C -0.114 4.114 7 C 0.301 3.699 8 N -0.572 5.572 9 C 0.364 3.636 10 N -0.593 5.593 11 C 0.507 3.493 12 N -0.679 5.679 13 C 0.185 3.815 14 C -0.218 4.218 15 C -0.052 4.052 16 C -0.195 4.195 17 C 0.162 3.838 18 O -0.173 6.173 19 C -0.393 4.393 20 H 0.094 0.906 21 C 0.040 3.960 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.237 4.237 28 C -0.049 4.049 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.219 0.781 35 H 0.200 0.800 36 H 0.419 0.581 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.271 0.729 42 H 0.128 0.872 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 -25.120 4.622 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.169 5.169 4 C -0.048 4.048 5 N -0.175 5.175 6 C -0.242 4.242 7 C 0.061 3.939 8 N -0.299 5.299 9 C 0.072 3.928 10 N -0.324 5.324 11 C 0.254 3.746 12 N -0.308 5.308 13 C 0.063 3.937 14 C -0.219 4.219 15 C -0.071 4.071 16 C -0.215 4.215 17 C 0.107 3.893 18 O -0.076 6.076 19 C -0.469 4.469 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.493 5.493 23 Si 0.767 3.233 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.256 4.256 28 C -0.067 4.067 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.235 0.765 35 H 0.217 0.783 36 H 0.257 0.743 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.146 0.854 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.448 -24.317 4.934 26.550 hybrid contribution -0.809 0.082 -1.141 1.401 sum -10.257 -24.235 3.793 26.588 Atomic orbital electron populations 1.22154 0.94131 1.03165 1.03276 1.21820 0.95678 0.78880 1.04707 1.45185 1.53676 1.13171 1.04838 1.25289 0.99367 0.87200 0.92954 1.70212 1.19491 1.17672 1.10099 1.19691 1.15565 0.96654 0.92269 1.18704 0.97484 0.89337 0.88370 1.67252 1.27558 1.35337 0.99739 1.24420 0.87482 0.81810 0.99053 1.68095 1.26127 1.24896 1.13278 1.17960 0.85057 0.84560 0.87059 1.45238 1.65128 1.09220 1.11235 1.20084 1.00265 0.83897 0.89461 1.19211 0.93787 0.97929 1.10980 1.20535 0.94317 0.96003 0.96252 1.20215 0.99067 0.95012 1.07176 1.19439 0.92005 0.87082 0.90776 1.83977 1.35489 1.26802 1.61321 1.21410 0.88644 1.04665 1.32142 0.88859 1.25325 0.97381 0.97516 0.96299 1.70047 1.14712 1.28203 1.36378 0.85626 0.79486 0.79423 0.78782 1.19038 1.20076 1.20059 1.21156 0.95791 1.00650 1.08042 1.20645 0.97999 0.92887 0.95213 0.91936 0.90456 0.91633 0.88582 0.88823 0.76456 0.78334 0.74268 0.91210 0.91156 0.86959 0.86357 0.91940 0.85405 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.16 0.38 -0.48 16 2 C 0.11 0.61 6.88 -4.04 -0.03 0.58 16 3 N -0.47 -4.48 2.79 -117.62 -0.33 -4.81 16 4 C 0.24 2.21 12.51 -89.50 -1.12 1.09 16 5 N -0.46 -6.05 11.28 -11.85 -0.13 -6.18 16 6 C -0.11 -1.63 7.17 -84.54 -0.61 -2.23 16 7 C 0.30 3.86 8.05 -155.80 -1.25 2.60 16 8 N -0.57 -7.12 10.47 -13.90 -0.15 -7.27 16 9 C 0.36 4.19 12.25 -92.07 -1.13 3.06 16 10 N -0.59 -7.98 9.70 -13.61 -0.13 -8.12 16 11 C 0.51 7.31 7.55 -154.64 -1.17 6.14 16 12 N -0.68 -9.59 5.68 -61.26 -0.35 -9.94 16 13 C 0.19 2.59 5.86 -5.20 -0.03 2.56 16 14 C -0.22 -3.57 5.25 -104.57 -0.55 -4.12 16 15 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 16 C -0.20 -4.02 9.99 -39.40 -0.39 -4.41 16 17 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 18 O -0.17 -4.86 9.76 0.05 0.00 -4.86 16 19 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 20 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.86 13.67 55.48 0.76 -24.11 16 23 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 C -0.24 -5.01 9.17 -39.40 -0.36 -5.37 16 28 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.25 8.13 -51.93 -0.42 -0.18 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.22 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.20 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.42 6.10 8.49 -40.82 -0.35 5.76 16 37 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -33.53 374.94 -11.91 -45.44 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.12 Total: 8.04 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -7.09 Total: -9.08 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.33 Total: -60.42 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: 0.00 Total: -4.86 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.53 -11.91 -45.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727826269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.908 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds