Wall clock time and date at job start Tue Mar 31 2020 22:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47144 * 2 1 4 4 C 1.36319 * 126.28072 * 264.95954 * 3 2 1 5 5 N 1.30135 * 109.98230 * 180.02562 * 4 3 2 6 6 C 1.35466 * 109.44285 * 0.02562 * 5 4 3 7 7 C 1.37199 * 126.27827 * 84.99484 * 3 2 1 8 8 N 1.32888 * 134.92711 * 359.96832 * 7 3 2 9 9 C 1.31645 * 120.64440 * 179.97438 * 8 7 3 10 10 N 1.32037 * 122.46752 * 0.02562 * 9 8 7 11 11 C 1.32916 * 121.18771 * 359.97438 * 10 9 8 12 12 N 1.38396 * 120.77058 * 179.97438 * 11 10 9 13 13 C 1.46493 * 119.99871 * 0.02562 * 12 11 10 14 14 C 1.50703 * 109.47159 * 180.02562 * 13 12 11 15 15 C 1.38305 * 119.93080 * 269.72814 * 14 13 12 16 16 C 1.38096 * 120.06785 * 179.71889 * 15 14 13 17 17 C 1.38880 * 119.93090 * 0.57185 * 16 15 14 18 18 O 1.35753 * 120.07025 * 179.67594 * 17 16 15 19 19 C 1.34825 * 117.00276 * 174.48501 * 18 17 16 20 20 H 1.08007 * 119.99549 * 5.06228 * 19 18 17 21 21 C 1.38655 * 120.00255 * 185.05817 * 19 18 17 22 22 N 1.31554 * 119.99806 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99763 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47173 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46906 * 120.00451 * 23 21 19 26 26 H 1.48503 * 109.46784 * 239.99801 * 23 21 19 27 27 C 1.38875 * 119.86203 * 359.70569 * 17 16 15 28 28 C 1.38099 * 119.93202 * 359.97438 * 27 17 16 29 29 H 1.09004 * 109.46783 * 60.00217 * 1 2 3 30 30 H 1.08996 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47476 * 300.00181 * 1 2 3 32 32 H 1.08997 * 109.47476 * 239.99819 * 2 1 3 33 33 H 1.09004 * 109.46783 * 119.99783 * 2 1 3 34 34 H 1.07998 * 125.00750 * 359.97438 * 4 3 2 35 35 H 1.08006 * 118.76670 * 179.97438 * 9 8 7 36 36 H 0.97001 * 119.99653 * 180.02562 * 12 11 10 37 37 H 1.08999 * 109.47588 * 299.99866 * 13 12 11 38 38 H 1.08999 * 109.47457 * 60.00155 * 13 12 11 39 39 H 1.08000 * 119.96568 * 359.97438 * 15 14 13 40 40 H 1.08007 * 120.03400 * 180.27321 * 16 15 14 41 41 H 0.97004 * 119.99780 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.03813 * 179.97438 * 27 17 16 43 43 H 1.08000 * 119.96600 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3782 2.1095 -1.0947 5 7 2.7649 3.2976 -0.7308 6 6 2.6785 3.4070 0.6167 7 6 2.1980 2.1787 1.1018 8 7 2.0217 2.0255 2.4100 9 6 2.2925 3.0082 3.2432 10 7 2.7452 4.1793 2.8347 11 6 2.9527 4.4254 1.5451 12 7 3.4270 5.6563 1.1265 13 6 3.7070 6.7060 2.1091 14 6 4.2079 7.9376 1.3996 15 6 5.5636 8.1064 1.1839 16 6 6.0252 9.2310 0.5289 17 6 5.1276 10.1989 0.0971 18 8 5.5789 11.3087 -0.5413 19 6 4.6495 12.1517 -1.0345 20 1 3.6018 11.9725 -0.8425 21 6 5.0386 13.2486 -1.7881 22 7 6.3146 13.4665 -2.0222 23 14 3.7508 14.4169 -2.4708 24 1 2.3987 13.9534 -2.0680 25 1 3.9861 15.7814 -1.9341 26 1 3.8439 14.4450 -3.9526 27 6 3.7675 10.0292 0.3203 28 6 3.3115 8.8992 0.9701 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3479 1.7528 -2.1136 35 1 2.1377 2.8507 4.3004 36 1 3.5740 5.8238 0.1825 37 1 2.7941 6.9470 2.6537 38 1 4.4657 6.3557 2.8090 39 1 6.2615 7.3558 1.5244 40 1 7.0837 9.3601 0.3568 41 1 6.5868 14.2337 -2.5498 42 1 3.0670 10.7803 -0.0139 43 1 2.2538 8.7665 1.1436 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727826269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:06 Heat of formation + Delta-G solvation = 82.856789 kcal Electronic energy + Delta-G solvation = -27196.098235 eV Core-core repulsion = 23242.383060 eV Total energy + Delta-G solvation = -3953.715175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.45568 -40.89850 -40.27022 -38.74617 -37.08201 -35.84464 -34.37175 -33.46076 -31.90078 -31.75314 -31.03299 -29.99674 -27.65105 -26.38744 -25.17310 -24.68760 -23.91003 -23.66576 -22.14178 -21.62175 -19.89486 -19.41042 -19.03226 -18.79567 -17.96387 -17.20942 -16.81120 -16.50864 -16.28808 -15.79027 -15.68058 -15.55639 -15.44922 -15.15228 -15.06835 -14.89503 -14.71313 -14.42556 -14.31922 -13.83258 -13.54137 -13.50953 -13.09044 -13.02659 -12.56791 -12.52026 -12.50190 -12.27516 -12.23191 -12.14273 -12.09981 -11.31956 -11.21702 -10.83685 -10.58500 -10.25226 -10.04454 -9.83270 -9.03571 -8.74852 -8.49578 -6.17823 -0.07037 0.37800 0.51290 0.56039 1.34841 1.39099 1.42498 1.53006 1.79623 2.12089 2.16356 2.82279 2.95795 3.10154 3.14454 3.23396 3.43313 3.47132 3.80927 3.88614 3.95430 4.02041 4.08709 4.13209 4.15657 4.40296 4.46897 4.54903 4.56296 4.71549 4.75116 4.79932 4.92059 5.02256 5.07281 5.13240 5.20936 5.24696 5.48526 5.50160 5.66831 5.71282 5.73662 6.00239 6.02160 6.06249 6.15547 6.57693 6.73890 6.95166 7.34914 7.74146 8.73466 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.001985 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.898208 B =14102.643225 C =14766.111227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.471 5.471 4 C 0.259 3.741 5 N -0.501 5.501 6 C -0.137 4.137 7 C 0.283 3.717 8 N -0.575 5.575 9 C 0.356 3.644 10 N -0.601 5.601 11 C 0.490 3.510 12 N -0.685 5.685 13 C 0.196 3.804 14 C -0.185 4.185 15 C -0.043 4.043 16 C -0.205 4.205 17 C 0.124 3.876 18 O -0.228 6.228 19 C -0.414 4.414 20 H 0.103 0.897 21 C -0.023 4.023 22 N -0.918 5.918 23 Si 1.019 2.981 24 H -0.252 1.252 25 H -0.268 1.268 26 H -0.268 1.268 27 C -0.244 4.244 28 C -0.045 4.045 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.266 0.734 35 H 0.235 0.765 36 H 0.416 0.584 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.120 0.880 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.147 -28.520 5.031 31.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.014 4.014 3 N -0.164 5.164 4 C -0.028 4.028 5 N -0.220 5.220 6 C -0.263 4.263 7 C 0.042 3.958 8 N -0.302 5.302 9 C 0.065 3.935 10 N -0.332 5.332 11 C 0.238 3.762 12 N -0.314 5.314 13 C 0.073 3.927 14 C -0.187 4.187 15 C -0.062 4.062 16 C -0.224 4.224 17 C 0.073 3.927 18 O -0.135 6.135 19 C -0.490 4.490 20 H 0.120 0.880 21 C -0.220 4.220 22 N -0.556 5.556 23 Si 0.838 3.162 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.193 1.193 27 C -0.263 4.263 28 C -0.064 4.064 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.056 0.944 32 H 0.153 0.847 33 H 0.108 0.892 34 H 0.282 0.718 35 H 0.251 0.749 36 H 0.253 0.747 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.164 0.836 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.666 -27.815 5.393 30.640 hybrid contribution -0.219 0.634 -1.109 1.296 sum -11.884 -27.181 4.284 29.973 Atomic orbital electron populations 1.22112 0.93805 1.04270 1.01916 1.22170 0.95858 0.76950 1.06460 1.45547 1.52829 1.14219 1.03804 1.26287 0.96035 0.85984 0.94473 1.70204 1.22038 1.19967 1.09774 1.19918 1.16205 0.97218 0.92996 1.19069 0.97812 0.89852 0.89103 1.67335 1.27412 1.35592 0.99845 1.25155 0.86781 0.81152 1.00434 1.68119 1.26378 1.25777 1.12941 1.18108 0.85754 0.84641 0.87703 1.44978 1.66302 1.09374 1.10783 1.19984 1.00893 0.82626 0.89155 1.19559 0.93239 0.98013 1.07851 1.20888 0.95457 0.95169 0.94644 1.20453 0.98867 0.95548 1.07564 1.19977 0.93780 0.87233 0.91746 1.83947 1.36535 1.28849 1.64129 1.21873 0.89231 1.05226 1.32623 0.87968 1.26601 0.99800 0.99195 0.96432 1.70187 1.17181 1.29618 1.38624 0.84524 0.76881 0.76752 0.78024 1.17483 1.19308 1.19333 1.21240 0.94722 1.01770 1.08609 1.20945 0.99823 0.91664 0.93956 0.91777 0.88136 0.94404 0.84726 0.89198 0.71838 0.74942 0.74708 0.90383 0.90093 0.83605 0.86620 0.91770 0.86187 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 10.24 71.98 0.74 -0.48 16 2 C 0.11 0.81 6.88 86.38 0.59 1.40 16 3 N -0.47 -7.66 2.79 -526.05 -1.47 -9.13 16 4 C 0.26 4.03 12.51 179.96 2.25 6.28 16 5 N -0.50 -12.45 11.28 -191.40 -2.16 -14.61 16 6 C -0.14 -3.72 7.17 39.70 0.28 -3.43 16 7 C 0.28 6.79 8.05 133.87 1.08 7.87 16 8 N -0.58 -13.41 10.47 -197.88 -2.07 -15.48 16 9 C 0.36 7.52 12.25 180.86 2.22 9.73 16 10 N -0.60 -15.10 9.70 -196.96 -1.91 -17.01 16 11 C 0.49 13.45 7.55 133.45 1.01 14.46 16 12 N -0.68 -18.12 5.68 -347.73 -1.98 -20.09 16 13 C 0.20 4.93 5.86 85.64 0.50 5.43 16 14 C -0.19 -5.67 5.25 -19.83 -0.10 -5.77 16 15 C -0.04 -1.42 9.69 22.25 0.22 -1.20 16 16 C -0.21 -8.58 9.99 22.39 0.22 -8.36 16 17 C 0.12 6.09 6.65 22.58 0.15 6.24 16 18 O -0.23 -13.67 9.76 -22.72 -0.22 -13.89 16 19 C -0.41 -23.96 9.49 67.92 0.64 -23.31 16 20 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 21 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 22 N -0.92 -56.18 13.67 21.61 0.30 -55.88 16 23 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 24 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 27 C -0.24 -10.48 9.17 22.39 0.21 -10.27 16 28 C -0.05 -1.54 9.69 22.25 0.22 -1.32 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.13 0.03 8.13 -2.39 -0.02 0.02 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.27 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.23 2.89 8.06 -2.91 -0.02 2.86 16 36 H 0.42 11.56 8.49 -92.71 -0.79 10.77 16 37 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 38 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 39 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.12 5.26 5.64 -2.91 -0.02 5.25 16 43 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -79.44 374.94 3.48 -75.96 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.28 Total: 28.90 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 10.69 Total: -3.55 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -9.29 Total: -132.20 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.22 Total: -13.89 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -79.44 3.48 -75.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727826269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.816 kcal (2) G-P(sol) polarization free energy of solvation -79.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds