Wall clock time and date at job start Tue Mar 31 2020 22:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46977 * 2 1 4 4 C 1.36938 * 119.99616 * 264.18070 * 3 2 1 5 5 H 1.07999 * 119.99474 * 188.36084 * 4 3 2 6 6 C 1.38805 * 120.00128 * 8.36353 * 4 3 2 7 7 N 1.31618 * 120.00511 * 25.01114 * 6 4 3 8 8 Si 1.86800 * 119.99836 * 205.01079 * 6 4 3 9 9 H 1.48494 * 109.47315 * 84.99710 * 8 6 4 10 10 H 1.48499 * 109.47182 * 204.99961 * 8 6 4 11 11 H 1.48503 * 109.47443 * 324.99477 * 8 6 4 12 12 C 1.46500 * 119.99939 * 84.18229 * 3 2 1 13 13 C 1.53003 * 109.46794 * 269.99968 * 12 3 2 14 14 H 1.08998 * 109.47193 * 60.00105 * 13 12 3 15 15 O 1.42905 * 109.47008 * 299.99983 * 13 12 3 16 16 C 1.52999 * 109.46591 * 180.02562 * 13 12 3 17 17 O 1.42906 * 109.46699 * 184.99904 * 16 13 12 18 18 C 1.35791 * 116.99784 * 179.97438 * 17 16 13 19 19 C 1.38852 * 119.92592 * 0.25654 * 18 17 16 20 20 C 1.37764 * 120.15388 * 180.29295 * 19 18 17 21 21 C 1.39760 * 120.00098 * 359.72903 * 20 19 18 22 22 C 1.47473 * 120.08095 * 180.02562 * 21 20 19 23 23 O 1.21500 * 120.00084 * 179.97438 * 22 21 20 24 24 O 1.34749 * 119.99541 * 359.97438 * 22 21 20 25 25 C 1.39796 * 119.84416 * 359.97438 * 21 20 19 26 26 C 1.38115 * 119.85180 * 359.97438 * 25 21 20 27 27 O 1.35994 * 120.00432 * 180.02562 * 26 25 21 28 28 C 1.42904 * 116.99995 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47316 * 300.00251 * 1 2 3 31 31 H 1.09003 * 109.46975 * 60.00708 * 1 2 3 32 32 H 1.09000 * 109.47339 * 239.99992 * 2 1 3 33 33 H 1.09003 * 109.46975 * 119.99292 * 2 1 3 34 34 H 0.96999 * 120.00409 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46664 * 150.00095 * 12 3 2 36 36 H 1.08993 * 109.47340 * 30.00242 * 12 3 2 37 37 H 0.96700 * 114.00049 * 300.00294 * 15 13 12 38 38 H 1.08996 * 109.47943 * 64.99982 * 16 13 12 39 39 H 1.09002 * 109.47416 * 304.99459 * 16 13 12 40 40 H 1.07994 * 119.92037 * 0.02562 * 19 18 17 41 41 H 1.08001 * 119.99832 * 179.69766 * 20 19 18 42 42 H 0.96701 * 117.00257 * 180.02562 * 24 22 21 43 43 H 1.08003 * 120.07359 * 180.02562 * 25 21 20 44 44 H 1.08999 * 109.46634 * 179.97438 * 28 27 26 45 45 H 1.08993 * 109.47120 * 59.99823 * 28 27 26 46 46 H 1.08996 * 109.46750 * 299.99629 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3598 1.9866 -1.1799 5 1 2.8450 2.9515 -1.1710 6 6 2.0825 1.3603 -2.3871 7 7 1.1040 0.4833 -2.4641 8 14 3.0980 1.7619 -3.9026 9 1 4.3243 0.9246 -3.9129 10 1 2.2982 1.4834 -5.1225 11 1 3.4787 3.1971 -3.8774 12 6 2.1412 2.1147 1.2622 13 6 0.8309 2.8484 1.5553 14 1 0.0191 2.1252 1.6329 15 8 0.5517 3.7662 0.4962 16 6 0.9595 3.6149 2.8732 17 8 -0.2990 4.2045 3.2059 18 6 -0.3575 4.9249 4.3555 19 6 0.7770 5.0648 5.1438 20 6 0.7215 5.7895 6.3141 21 6 -0.4773 6.3908 6.7075 22 6 -0.5386 7.1674 7.9597 23 8 -1.5814 7.6899 8.3000 24 8 0.5620 7.2976 8.7262 25 6 -1.6179 6.2551 5.9107 26 6 -1.5549 5.5280 4.7381 27 8 -2.6624 5.3945 3.9604 28 6 -3.8566 6.0332 4.4169 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8901 34 1 0.9100 0.0459 -3.3078 35 1 2.9530 2.8379 1.1845 36 1 2.3542 1.4147 2.0700 37 1 1.2338 4.4399 0.3695 38 1 1.7106 4.3975 2.7667 39 1 1.2598 2.9285 3.6650 40 1 1.7040 4.6007 4.8410 41 1 1.6042 5.8926 6.9278 42 1 0.4729 7.8156 9.5379 43 1 -2.5461 6.7186 6.2110 44 1 -4.6618 5.8486 3.7058 45 1 -3.6853 7.1063 4.5009 46 1 -4.1332 5.6319 5.3918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737067745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:24 Heat of formation + Delta-G solvation = -175.137692 kcal Electronic energy + Delta-G solvation = -29585.195630 eV Core-core repulsion = 25248.398553 eV Total energy + Delta-G solvation = -4336.797077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.89742 -40.93148 -39.88215 -38.71652 -37.74423 -37.08127 -36.66246 -33.32089 -32.06116 -31.61125 -31.34376 -30.37718 -28.39358 -27.26164 -25.48326 -24.92344 -23.58630 -22.67644 -22.02646 -21.97568 -19.84637 -19.16384 -18.84020 -18.37901 -17.72774 -17.45581 -17.18586 -17.01017 -16.79964 -16.56169 -16.44850 -15.80361 -15.70551 -15.49748 -15.21694 -14.88176 -14.78733 -14.48293 -13.94467 -13.70030 -13.60559 -13.54383 -13.44758 -13.04141 -12.83215 -12.63321 -12.61383 -12.54171 -12.37995 -12.30128 -12.11756 -11.99103 -11.79141 -11.77898 -11.73434 -11.45297 -11.21227 -10.85538 -10.23614 -9.95440 -9.01098 -8.75467 -7.70865 -5.00822 -0.42113 0.20803 1.45332 1.52399 1.54763 1.60854 1.96231 2.08317 2.29477 2.61397 2.61806 3.38586 3.54492 3.67194 3.79973 3.85733 3.94922 3.99554 4.05430 4.12658 4.16605 4.33219 4.35488 4.45243 4.49907 4.54341 4.60857 4.68402 4.76999 4.93787 4.96214 5.02062 5.10336 5.12750 5.18889 5.27357 5.38664 5.44717 5.55590 5.69953 5.85440 6.02560 6.20358 6.43117 6.50132 6.95786 7.07436 7.30039 8.00550 8.39740 9.32075 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.002273 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.977848 B =12317.911279 C =12788.370301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 N -0.600 5.600 4 C -0.230 4.230 5 H 0.079 0.921 6 C -0.061 4.061 7 N -0.922 5.922 8 Si 0.953 3.047 9 H -0.291 1.291 10 H -0.308 1.308 11 H -0.274 1.274 12 C 0.123 3.877 13 C 0.088 3.912 14 H 0.071 0.929 15 O -0.562 6.562 16 C 0.029 3.971 17 O -0.314 6.314 18 C 0.128 3.872 19 C -0.188 4.188 20 C -0.037 4.037 21 C -0.153 4.153 22 C 0.541 3.459 23 O -0.552 6.552 24 O -0.500 6.500 25 C -0.112 4.112 26 C 0.064 3.936 27 O -0.330 6.330 28 C 0.017 3.983 29 H 0.030 0.970 30 H 0.022 0.978 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.240 0.760 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.373 0.627 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.171 0.829 41 H 0.171 0.829 42 H 0.434 0.566 43 H 0.152 0.848 44 H 0.115 0.885 45 H 0.065 0.935 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 11.838 23.119 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.040 3.960 3 N -0.320 5.320 4 C -0.360 4.360 5 H 0.096 0.904 6 C -0.255 4.255 7 N -0.571 5.571 8 Si 0.784 3.216 9 H -0.218 1.218 10 H -0.235 1.235 11 H -0.199 1.199 12 C -0.004 4.004 13 C 0.026 3.974 14 H 0.089 0.911 15 O -0.367 6.367 16 C -0.046 4.046 17 O -0.227 6.227 18 C 0.081 3.919 19 C -0.206 4.206 20 C -0.055 4.055 21 C -0.154 4.154 22 C 0.387 3.613 23 O -0.445 6.445 24 O -0.314 6.314 25 C -0.131 4.131 26 C 0.019 3.981 27 O -0.245 6.245 28 C -0.077 4.077 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.220 0.780 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.188 0.812 41 H 0.189 0.811 42 H 0.297 0.703 43 H 0.170 0.830 44 H 0.133 0.867 45 H 0.084 0.916 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.028 11.146 22.332 24.980 hybrid contribution 0.185 0.806 -0.445 0.939 sum -0.843 11.952 21.887 24.952 Atomic orbital electron populations 1.22201 0.99311 0.98324 0.99691 1.20759 0.92413 0.84797 0.97987 1.44403 1.75044 1.10180 1.02382 1.19450 1.29295 1.02987 0.84294 0.90366 1.25341 0.99156 1.01319 0.99677 1.70344 1.28664 1.33571 1.24477 0.85473 0.78591 0.77743 0.79841 1.21843 1.23548 1.19903 1.21598 0.94305 0.95803 0.88718 1.22943 1.00609 0.90399 0.83435 0.91119 1.86689 1.49527 1.45259 1.55189 1.23937 0.83866 0.98061 0.98769 1.86281 1.36281 1.63354 1.36800 1.19121 0.92695 0.92638 0.87433 1.21411 0.97874 1.04900 0.96458 1.21440 0.97293 0.92002 0.94747 1.18770 0.95683 1.05863 0.95121 1.20615 0.80651 0.76694 0.83313 1.90877 1.32684 1.47873 1.73041 1.84508 1.37682 1.70480 1.38742 1.21119 1.00035 0.99271 0.92631 1.18305 0.86853 1.00413 0.92540 1.86228 1.18128 1.72474 1.47646 1.23352 0.84491 0.97714 1.02145 0.95124 0.95950 0.92950 0.92380 0.95167 0.95007 0.91183 0.90645 0.78038 0.89195 0.88601 0.81165 0.81120 0.70335 0.83007 0.86670 0.91642 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.39 9.58 71.98 0.69 -5.70 16 2 C 0.17 7.75 5.64 86.38 0.49 8.24 16 3 N -0.60 -27.52 2.48 -702.01 -1.74 -29.27 16 4 C -0.23 -11.81 9.05 84.03 0.76 -11.05 16 5 H 0.08 3.84 7.93 -2.91 -0.02 3.82 16 6 C -0.06 -3.33 4.90 84.86 0.42 -2.91 16 7 N -0.92 -53.07 8.58 21.65 0.19 -52.89 16 8 Si 0.95 44.65 29.62 68.60 2.03 46.69 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.31 -14.98 7.11 99.48 0.71 -14.28 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.12 4.18 5.42 86.38 0.47 4.64 16 13 C 0.09 3.00 3.40 30.60 0.10 3.10 16 14 H 0.07 2.84 5.93 -2.39 -0.01 2.83 16 15 O -0.56 -22.57 12.58 -144.32 -1.81 -24.39 16 16 C 0.03 0.71 4.37 71.98 0.31 1.02 16 17 O -0.31 -9.55 9.87 -71.04 -0.70 -10.25 16 18 C 0.13 3.26 6.71 22.70 0.15 3.41 16 19 C -0.19 -3.33 9.01 22.30 0.20 -3.13 16 20 C -0.04 -0.57 9.60 22.53 0.22 -0.35 16 21 C -0.15 -2.93 5.87 -20.10 -0.12 -3.04 16 22 C 0.54 9.75 8.26 70.26 0.58 10.33 16 23 O -0.55 -13.19 17.12 19.83 0.34 -12.85 16 24 O -0.50 -5.20 12.67 -56.60 -0.72 -5.92 16 25 C -0.11 -2.43 8.58 22.62 0.19 -2.24 16 26 C 0.06 1.66 6.69 22.53 0.15 1.82 16 27 O -0.33 -9.25 10.28 -79.46 -0.82 -10.07 16 28 C 0.02 0.31 9.81 113.37 1.11 1.42 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.02 0.96 5.98 -2.39 -0.01 0.95 16 31 H 0.05 2.91 6.31 -2.39 -0.02 2.90 16 32 H 0.06 3.10 5.86 -2.39 -0.01 3.09 16 33 H 0.03 1.23 7.98 -2.39 -0.02 1.21 16 34 H 0.24 13.75 8.31 -92.71 -0.77 12.98 16 35 H 0.07 2.12 8.03 -2.39 -0.02 2.10 16 36 H 0.08 2.17 7.95 -2.39 -0.02 2.15 16 37 H 0.37 12.18 9.04 -74.06 -0.67 11.51 16 38 H 0.09 1.71 7.64 -2.39 -0.02 1.69 16 39 H 0.10 1.79 7.66 -2.39 -0.02 1.77 16 40 H 0.17 2.08 6.27 -2.91 -0.02 2.07 16 41 H 0.17 1.64 7.60 -2.91 -0.02 1.62 16 42 H 0.43 0.63 9.11 -74.06 -0.67 -0.04 16 43 H 0.15 3.04 5.87 -2.91 -0.02 3.02 16 44 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 46 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 Total: -1.00 -75.57 380.49 2.19 -73.38 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.30 Total: 20.00 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 5.73 Total: 5.56 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -1.56 Total: -82.16 kcal Atomic # 8 Polarization: -59.76 SS G_CDS: -3.71 Total: -63.47 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.69 kcal Total: -75.57 2.19 -73.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737067745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.757 kcal (2) G-P(sol) polarization free energy of solvation -75.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds