Wall clock time and date at job start Tue Mar 31 2020 22:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37536 * 125.82213 * 2 1 4 4 N 1.38702 * 125.66633 * 0.02562 * 3 2 1 5 5 C 1.47013 * 111.00360 * 237.90051 * 4 3 2 6 6 C 1.53093 * 109.25673 * 177.60962 * 5 4 3 7 7 O 1.43018 * 109.26244 * 56.84794 * 6 5 4 8 8 C 1.43011 * 113.73949 * 301.33438 * 7 6 5 9 9 C 1.47015 * 110.99464 * 114.26312 * 4 3 2 10 10 N 1.30144 * 108.67177 * 179.71389 * 3 2 1 11 11 N 1.40175 * 108.02673 * 0.43987 * 10 3 2 12 12 C 1.46500 * 126.30541 * 179.81949 * 11 10 3 13 13 N 1.46498 * 109.47181 * 269.68807 * 12 11 10 14 14 C 1.36938 * 119.99944 * 90.00008 * 13 12 11 15 15 H 1.08003 * 120.00276 * 216.51944 * 14 13 12 16 16 C 1.38815 * 120.00024 * 36.52161 * 14 13 12 17 17 N 1.31616 * 120.00158 * 20.95330 * 16 14 13 18 18 Si 1.86798 * 119.99859 * 200.96190 * 16 14 13 19 19 H 1.48501 * 109.47073 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47075 * 299.99420 * 18 16 14 21 21 H 1.48498 * 109.47422 * 59.99909 * 18 16 14 22 22 C 1.46501 * 120.00160 * 269.99975 * 13 12 11 23 23 C 1.52994 * 117.49843 * 191.77857 * 22 13 12 24 24 C 1.52999 * 60.00269 * 252.51180 * 23 22 13 25 25 C 1.34786 * 125.82144 * 179.97438 * 2 1 3 26 26 S 1.71200 * 126.22113 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47104 * 269.05082 * 1 2 3 28 28 H 1.09002 * 109.46610 * 29.05152 * 1 2 3 29 29 H 1.08998 * 109.46910 * 149.04759 * 1 2 3 30 30 H 1.08999 * 109.50359 * 297.54429 * 5 4 3 31 31 H 1.08992 * 109.50510 * 57.67374 * 5 4 3 32 32 H 1.08999 * 109.50973 * 296.91336 * 6 5 4 33 33 H 1.08999 * 109.53917 * 176.80585 * 6 5 4 34 34 H 1.09004 * 109.50175 * 298.73169 * 8 7 6 35 35 H 1.09000 * 109.54732 * 178.62544 * 8 7 6 36 36 H 1.08999 * 109.51499 * 302.32846 * 9 4 3 37 37 H 1.09006 * 109.50698 * 62.46455 * 9 4 3 38 38 H 1.09001 * 109.47348 * 149.69038 * 12 11 10 39 39 H 1.09000 * 109.47151 * 29.69014 * 12 11 10 40 40 H 0.96998 * 119.99989 * 176.78627 * 17 16 14 41 41 H 1.08996 * 115.54852 * 337.48504 * 22 13 12 42 42 H 1.08999 * 117.50326 * 359.97438 * 23 22 13 43 43 H 1.09000 * 117.49964 * 145.02305 * 23 22 13 44 44 H 1.08996 * 117.50234 * 252.51618 * 24 23 22 45 45 H 1.08995 * 117.52082 * 107.47480 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2700 1.1152 0.0000 4 7 1.8296 2.4304 0.0005 5 6 2.3535 3.1620 -1.1621 6 6 1.7963 4.5879 -1.1544 7 8 2.1370 5.2209 0.0819 8 6 1.6422 4.5353 1.2353 9 6 2.1977 3.1087 1.2519 10 7 3.5136 0.7314 0.0062 11 7 3.5350 -0.6701 0.0001 12 6 4.7288 -1.5194 0.0002 13 7 5.1267 -1.8025 -1.3810 14 6 6.0002 -0.9685 -2.0266 15 1 5.8760 -0.7675 -3.0804 16 6 7.0452 -0.3815 -1.3265 17 7 7.4578 -0.9102 -0.1940 18 14 7.8659 1.1592 -1.9915 19 1 8.9449 1.5849 -1.0644 20 1 8.4456 0.8734 -3.3285 21 1 6.8592 2.2444 -2.1101 22 6 4.5903 -2.9779 -2.0716 23 6 5.2420 -3.3772 -3.3969 24 6 3.8485 -2.7456 -3.3894 25 6 2.2539 -1.0929 0.0005 26 16 1.7261 -2.7215 0.0018 27 1 -0.3633 -0.0170 1.0275 28 1 -0.3632 0.8984 -0.4991 29 1 -0.3633 -0.8813 -0.5286 30 1 3.4417 3.1961 -1.1105 31 1 2.0476 2.6566 -2.0781 32 1 0.7119 4.5556 -1.2600 33 1 2.2260 5.1517 -1.9825 34 1 0.5533 4.5013 1.1992 35 1 1.9602 5.0602 2.1360 36 1 1.7781 2.5645 2.0980 37 1 3.2835 3.1420 1.3420 38 1 4.5090 -2.4552 0.5140 39 1 5.5407 -1.0047 0.5140 40 1 8.2180 -0.5276 0.2714 41 1 4.2304 -3.7789 -1.4259 42 1 6.0696 -2.7651 -3.7554 43 1 5.3111 -4.4412 -3.6234 44 1 3.0008 -3.3940 -3.6108 45 1 3.7593 -1.7182 -3.7423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747789238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:37 Heat of formation + Delta-G solvation = 106.005689 kcal Electronic energy + Delta-G solvation = -28975.816064 eV Core-core repulsion = 25158.548652 eV Total energy + Delta-G solvation = -3817.267412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.68212 -40.68450 -39.05481 -37.23237 -36.40545 -35.27704 -33.37184 -32.38569 -31.86720 -29.19289 -28.57661 -27.16660 -25.69854 -25.22521 -23.96862 -23.06928 -22.99022 -21.86686 -21.41132 -19.59005 -18.62646 -18.07997 -17.87346 -17.74649 -17.18899 -17.04862 -16.53357 -16.47380 -16.15578 -16.08802 -15.73053 -15.66652 -15.23163 -15.03055 -14.21661 -13.86120 -13.74214 -13.56961 -13.32581 -13.07260 -12.93436 -12.85640 -12.81118 -12.65174 -12.45908 -12.34804 -12.31276 -12.10080 -11.80083 -11.70500 -11.66932 -11.33662 -10.99346 -10.96175 -10.63229 -10.30617 -8.94675 -8.74824 -8.66793 -8.18647 -5.75175 0.16189 0.42307 0.54301 1.07629 1.33899 1.39021 1.44231 1.45453 2.30059 2.57916 2.84599 2.99728 3.16328 3.24349 3.37188 3.67330 3.69274 3.78119 3.92322 4.11597 4.15079 4.22085 4.26446 4.33320 4.36648 4.39390 4.44497 4.55432 4.57053 4.66557 4.72033 4.74196 4.83398 4.88126 4.94192 4.96326 4.99028 5.20220 5.25619 5.42356 5.45402 5.50727 5.74513 6.08029 6.16504 6.27922 6.80016 7.44774 7.97242 8.85069 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009541 B = 0.005542 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.016710 B = 5051.343760 C = 6972.006571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.475 5.475 3 C 0.418 3.582 4 N -0.441 5.441 5 C 0.022 3.978 6 C 0.076 3.924 7 O -0.399 6.399 8 C 0.073 3.927 9 C 0.021 3.979 10 N -0.311 5.311 11 N -0.347 5.347 12 C 0.366 3.634 13 N -0.525 5.525 14 C -0.281 4.281 15 H 0.057 0.943 16 C -0.005 4.005 17 N -0.905 5.905 18 Si 0.960 3.040 19 H -0.284 1.284 20 H -0.271 1.271 21 H -0.282 1.282 22 C 0.102 3.898 23 C -0.175 4.175 24 C -0.194 4.194 25 C 0.459 3.541 26 S -0.669 6.669 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.040 0.960 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.265 0.735 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.109 12.416 1.392 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.175 5.175 3 C 0.049 3.951 4 N -0.169 5.169 5 C -0.105 4.105 6 C -0.001 4.001 7 O -0.318 6.318 8 C -0.004 4.004 9 C -0.106 4.106 10 N -0.137 5.137 11 N -0.145 5.145 12 C 0.159 3.841 13 N -0.238 5.238 14 C -0.410 4.410 15 H 0.074 0.926 16 C -0.205 4.205 17 N -0.545 5.545 18 Si 0.787 3.213 19 H -0.209 1.209 20 H -0.196 1.196 21 H -0.208 1.208 22 C -0.005 4.005 23 C -0.213 4.213 24 C -0.234 4.234 25 C 0.093 3.907 26 S -0.544 6.544 27 H 0.116 0.884 28 H 0.140 0.860 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.139 0.861 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.114 0.886 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.527 11.932 1.505 18.100 hybrid contribution 1.044 0.626 -0.339 1.264 sum -12.483 12.558 1.166 17.745 Atomic orbital electron populations 1.22365 0.71015 1.06367 1.05763 1.46267 1.10795 1.02442 1.58020 1.22269 0.84357 0.89610 0.98824 1.59493 1.56977 0.94055 1.06340 1.23054 0.98604 0.96892 0.91984 1.22792 1.01333 0.88677 0.87309 1.88016 1.78153 1.50666 1.14956 1.22847 0.99795 0.88145 0.89571 1.23134 1.00190 0.97556 0.89760 1.77734 1.18197 0.94639 1.23129 1.52986 1.06761 1.01981 1.52769 1.21943 0.82368 0.91580 0.88159 1.43987 1.44804 1.23198 1.11851 1.18954 1.05305 1.22263 0.94497 0.92557 1.25778 0.96254 1.01074 0.97431 1.69871 1.25813 1.40165 1.18696 0.85472 0.77642 0.79987 0.78186 1.20935 1.19643 1.20808 1.21461 1.00476 0.90755 0.87787 1.23115 0.95570 1.00834 1.01821 1.23067 0.95212 0.99941 1.05190 1.23706 0.84683 0.93427 0.88918 1.92978 1.83751 0.98376 1.79250 0.88355 0.86031 0.88858 0.94487 0.88891 0.89389 0.86146 0.89488 0.85662 0.87806 0.94129 0.89544 0.86418 0.92565 0.87959 0.89952 0.87441 0.88613 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.78 10.82 127.77 1.38 3.17 16 2 N -0.47 -14.89 3.14 -552.20 -1.74 -16.63 16 3 C 0.42 13.12 6.41 259.98 1.67 14.79 16 4 N -0.44 -10.06 4.63 -704.80 -3.26 -13.32 16 5 C 0.02 0.50 5.53 86.31 0.48 0.97 16 6 C 0.08 1.17 7.01 72.01 0.50 1.68 16 7 O -0.40 -7.41 10.83 -148.98 -1.61 -9.02 16 8 C 0.07 1.00 7.01 72.02 0.50 1.51 16 9 C 0.02 0.41 5.58 86.32 0.48 0.89 16 10 N -0.31 -12.58 12.43 -57.82 -0.72 -13.30 16 11 N -0.35 -15.17 3.86 -360.18 -1.39 -16.56 16 12 C 0.37 17.67 6.43 170.96 1.10 18.77 16 13 N -0.52 -25.94 3.03 -689.69 -2.09 -28.03 16 14 C -0.28 -14.72 8.15 84.03 0.69 -14.03 16 15 H 0.06 3.03 7.22 -2.91 -0.02 3.01 16 16 C -0.01 -0.27 4.98 84.86 0.42 0.16 16 17 N -0.90 -49.13 11.36 21.65 0.25 -48.89 16 18 Si 0.96 42.95 29.60 68.60 2.03 44.98 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 C 0.10 4.58 6.61 44.99 0.30 4.88 16 23 C -0.18 -7.01 9.79 30.59 0.30 -6.71 16 24 C -0.19 -7.88 10.16 30.59 0.31 -7.57 16 25 C 0.46 18.45 7.85 179.01 1.41 19.86 16 26 S -0.67 -29.14 29.60 -56.49 -1.67 -30.81 16 27 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.12 1.81 8.07 -2.39 -0.02 1.79 16 29 H 0.09 2.17 7.66 -2.39 -0.02 2.16 16 30 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.09 4.20 7.58 -2.39 -0.02 4.18 16 39 H 0.12 6.28 5.42 -2.39 -0.01 6.27 16 40 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 41 H 0.10 4.65 8.11 -2.39 -0.02 4.63 16 42 H 0.08 3.59 6.83 -2.39 -0.02 3.57 16 43 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 44 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 45 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -67.77 382.98 0.32 -67.45 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.99 Total: 25.78 kcal Atomic # 6 Polarization: 28.82 SS G_CDS: 9.54 Total: 38.35 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -8.95 Total: -136.73 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -1.61 Total: -9.02 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -29.14 SS G_CDS: -1.67 Total: -30.81 kcal Total: -67.77 0.32 -67.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747789238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.455 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds