Wall clock time and date at job start Tue Mar 31 2020 22:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34237 * 116.99718 * 2 1 4 4 O 1.20824 * 119.99662 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99720 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.46690 * 179.97438 * 5 3 2 7 7 C 1.36934 * 120.00186 * 276.35376 * 6 5 3 8 8 H 1.08008 * 120.00045 * 179.15690 * 7 6 5 9 9 C 1.38804 * 120.00142 * 359.16414 * 7 6 5 10 10 N 1.31617 * 120.00398 * 28.78350 * 9 7 6 11 11 Si 1.86809 * 120.00100 * 208.78526 * 9 7 6 12 12 H 1.48491 * 109.47057 * 84.98781 * 11 9 7 13 13 H 1.48506 * 109.47052 * 204.98927 * 11 9 7 14 14 H 1.48504 * 109.46896 * 324.98781 * 11 9 7 15 15 C 1.46504 * 119.99931 * 96.36346 * 6 5 3 16 16 C 1.52997 * 109.46606 * 269.99832 * 15 6 5 17 17 H 1.08999 * 109.47360 * 304.99501 * 16 15 6 18 18 O 1.42898 * 109.47342 * 64.99990 * 16 15 6 19 19 C 1.50702 * 109.47047 * 184.99776 * 16 15 6 20 20 C 1.38152 * 120.00167 * 264.72813 * 19 16 15 21 21 C 1.38679 * 120.00231 * 179.72445 * 20 19 16 22 22 O 1.35982 * 120.00227 * 180.27398 * 21 20 19 23 23 C 1.42905 * 116.99902 * 180.27549 * 22 21 20 24 24 C 1.38724 * 119.99777 * 0.54507 * 21 20 19 25 25 C 1.38112 * 119.99820 * 359.72712 * 24 21 20 26 26 C 1.38680 * 119.99806 * 84.99642 * 19 16 15 27 27 O 1.35977 * 120.00130 * 359.97438 * 26 19 16 28 28 C 1.42899 * 117.00012 * 180.02562 * 27 26 19 29 29 H 1.08997 * 109.47458 * 300.00432 * 1 2 3 30 30 H 1.09004 * 109.47332 * 60.00731 * 1 2 3 31 31 H 1.08999 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47045 * 60.00176 * 5 3 2 33 33 H 1.08996 * 109.47464 * 299.99968 * 5 3 2 34 34 H 0.96999 * 120.00939 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47643 * 149.99788 * 15 6 5 36 36 H 1.09003 * 109.47210 * 29.99189 * 15 6 5 37 37 H 0.96697 * 114.00303 * 60.00155 * 18 16 15 38 38 H 1.08005 * 120.00080 * 359.96769 * 20 19 16 39 39 H 1.09001 * 109.46514 * 299.99633 * 23 22 21 40 40 H 1.09004 * 109.47295 * 59.99505 * 23 22 21 41 41 H 1.08999 * 109.47073 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00228 * 179.70894 * 24 21 20 43 43 H 1.07999 * 119.99757 * 179.97438 * 25 24 21 44 44 H 1.09004 * 109.47105 * 299.99612 * 28 27 26 45 45 H 1.09004 * 109.47577 * 59.99456 * 28 27 26 46 46 H 1.09004 * 109.47515 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9815 2.6798 -0.0002 7 6 4.0503 3.3729 -1.1792 8 1 4.3433 4.4125 -1.1782 9 6 3.7432 2.7395 -2.3755 10 7 2.8867 1.7403 -2.3903 11 14 4.5457 3.3053 -3.9647 12 1 5.8654 2.6417 -4.1164 13 1 3.6760 2.9460 -5.1136 14 1 4.7334 4.7779 -3.9275 15 6 4.3235 3.3433 1.2605 16 6 3.0676 3.9807 1.8583 17 1 2.6146 4.6479 1.1250 18 8 2.1353 2.9567 2.2107 19 6 3.4402 4.7660 3.0893 20 6 3.3329 4.1850 4.3381 21 6 3.6812 4.9058 5.4705 22 8 3.5809 4.3320 6.6993 23 6 3.9508 5.1347 7.8222 24 6 4.1266 6.2140 5.3502 25 6 4.2285 6.7968 4.1022 26 6 3.8855 6.0739 2.9690 27 8 3.9864 6.6474 1.7402 28 6 4.4525 7.9973 1.6907 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9563 0.7807 -0.8892 33 1 3.9557 0.7811 0.8908 34 1 2.6724 1.2973 -3.2262 35 1 5.0694 4.1158 1.0740 36 1 4.7265 2.6101 1.9592 37 1 2.4718 2.3251 2.8610 38 1 2.9815 3.1680 4.4322 39 1 4.9933 5.4375 7.7246 40 1 3.3170 6.0207 7.8601 41 1 3.8238 4.5581 8.7385 42 1 4.3934 6.7770 6.2324 43 1 4.5748 7.8154 4.0086 44 1 3.7756 8.6365 2.2575 45 1 5.4517 8.0528 2.1228 46 1 4.4854 8.3326 0.6540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749156087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:42 Heat of formation + Delta-G solvation = -136.530322 kcal Electronic energy + Delta-G solvation = -31306.578355 eV Core-core repulsion = 26971.455420 eV Total energy + Delta-G solvation = -4335.122936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.50521 -38.93561 -38.63445 -37.40689 -35.95154 -35.05232 -34.11234 -31.62745 -31.05408 -29.92584 -28.35242 -27.47838 -26.94246 -26.77582 -25.76676 -23.91016 -22.01085 -21.55113 -20.53788 -19.51430 -18.30309 -17.50025 -16.92274 -16.72022 -16.00496 -15.84186 -15.69274 -15.45886 -15.13596 -14.85521 -14.76024 -14.46421 -14.42308 -14.22695 -13.74146 -13.48680 -13.16422 -12.79555 -12.67710 -12.47449 -12.27188 -12.05551 -11.94707 -11.65369 -11.59302 -11.38055 -10.95626 -10.92104 -10.83639 -10.64416 -10.54144 -10.34906 -10.25200 -10.08870 -9.88072 -9.63481 -9.23339 -8.89609 -8.58565 -8.27883 -7.62494 -7.02582 -5.87555 -3.06095 1.30943 1.55800 3.23750 3.42012 3.48961 3.49640 3.50663 3.77938 4.20544 4.34970 4.56662 4.70169 4.75377 4.94384 4.98698 5.03222 5.13782 5.20379 5.22857 5.28259 5.32302 5.43635 5.51305 5.56100 5.65213 5.87769 5.92489 5.99979 6.08493 6.11033 6.14469 6.30036 6.31036 6.35874 6.45601 6.60529 6.66072 6.88331 7.02942 7.26635 7.32126 7.59234 7.79701 8.08124 8.22546 8.37849 9.10308 9.70043 9.86998 10.20227 11.23982 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.004108 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.011483 B = 6814.283433 C = 8591.746683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.390 6.390 3 C 0.466 3.534 4 O -0.481 6.481 5 C 0.189 3.811 6 N -0.561 5.561 7 C -0.247 4.247 8 H 0.084 0.916 9 C 0.003 3.997 10 N -0.897 5.897 11 Si 0.902 3.098 12 H -0.287 1.287 13 H -0.294 1.294 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.133 3.867 17 H 0.115 0.885 18 O -0.528 6.528 19 C -0.093 4.093 20 C -0.110 4.110 21 C 0.091 3.909 22 O -0.319 6.319 23 C 0.030 3.970 24 C -0.181 4.181 25 C -0.171 4.171 26 C 0.101 3.899 27 O -0.303 6.303 28 C 0.029 3.971 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.257 0.743 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.348 0.652 38 H 0.135 0.865 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 6.220 16.246 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.308 6.308 3 C 0.304 3.696 4 O -0.363 6.363 5 C 0.060 3.940 6 N -0.279 5.279 7 C -0.375 4.375 8 H 0.102 0.898 9 C -0.195 4.195 10 N -0.542 5.542 11 Si 0.732 3.268 12 H -0.214 1.214 13 H -0.221 1.221 14 H -0.207 1.207 15 C 0.002 3.998 16 C 0.071 3.929 17 H 0.133 0.867 18 O -0.330 6.330 19 C -0.095 4.095 20 C -0.129 4.129 21 C 0.046 3.954 22 O -0.233 6.233 23 C -0.065 4.065 24 C -0.200 4.200 25 C -0.190 4.190 26 C 0.055 3.945 27 O -0.216 6.216 28 C -0.066 4.066 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.193 0.807 38 H 0.153 0.847 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.979 6.525 15.486 17.066 hybrid contribution 0.375 0.825 -0.219 0.932 sum 3.354 7.350 15.267 17.273 Atomic orbital electron populations 1.22746 0.80440 1.00655 1.01032 1.86532 1.20482 1.37454 1.86334 1.25107 0.93032 0.80226 0.71195 1.90482 1.66074 1.36038 1.43709 1.20635 0.86201 0.86295 1.00860 1.44332 1.73832 1.07632 1.02135 1.19306 1.39465 0.95848 0.82870 0.89840 1.24689 0.98332 0.98603 0.97834 1.69908 1.31134 1.26864 1.26336 0.86279 0.79386 0.78112 0.83040 1.21444 1.22106 1.20687 1.21578 0.94353 0.95978 0.87906 1.21698 0.92873 0.88226 0.90130 0.86697 1.86940 1.41545 1.41175 1.63353 1.20265 1.00121 0.92498 0.96596 1.19962 1.03406 1.00760 0.88752 1.18806 0.99570 0.92046 0.84945 1.86074 1.83253 1.41262 1.12702 1.22979 0.99745 0.96215 0.87610 1.20878 1.06400 0.94778 0.97902 1.20949 1.05739 1.00434 0.91865 1.18689 0.99125 0.92403 0.84258 1.86230 1.81664 1.28105 1.25606 1.23012 0.98374 0.81378 1.03843 0.93720 0.93311 0.90760 0.87238 0.93628 0.93252 0.91669 0.93664 0.80743 0.84685 0.92947 0.93011 0.88538 0.85700 0.85471 0.93210 0.93026 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.90 10.56 101.05 1.07 1.97 16 2 O -0.39 -8.95 10.57 -39.28 -0.41 -9.36 16 3 C 0.47 11.67 4.99 36.01 0.18 11.85 16 4 O -0.48 -13.46 13.29 -26.27 -0.35 -13.81 16 5 C 0.19 4.48 5.46 -5.19 -0.03 4.45 16 6 N -0.56 -13.58 2.05 -174.61 -0.36 -13.93 16 7 C -0.25 -6.62 9.50 -15.06 -0.14 -6.76 16 8 H 0.08 2.23 7.98 -52.48 -0.42 1.81 16 9 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 10 N -0.90 -25.53 8.83 55.49 0.49 -25.04 16 11 Si 0.90 21.66 29.64 -169.99 -5.04 16.62 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.13 2.61 5.35 -4.04 -0.02 2.59 16 16 C 0.13 2.63 2.92 -27.88 -0.08 2.55 16 17 H 0.12 2.76 7.69 -51.93 -0.40 2.37 16 18 O -0.53 -10.76 9.35 -57.90 -0.54 -11.31 16 19 C -0.09 -1.56 5.08 -104.49 -0.53 -2.09 16 20 C -0.11 -1.66 9.24 -39.45 -0.36 -2.02 16 21 C 0.09 1.25 6.69 -39.24 -0.26 0.99 16 22 O -0.32 -3.99 10.50 -19.68 -0.21 -4.20 16 23 C 0.03 0.24 9.81 101.05 0.99 1.23 16 24 C -0.18 -2.21 9.03 -39.45 -0.36 -2.57 16 25 C -0.17 -2.21 9.03 -39.45 -0.36 -2.57 16 26 C 0.10 1.59 6.66 -39.24 -0.26 1.32 16 27 O -0.30 -4.91 9.63 -19.67 -0.19 -5.10 16 28 C 0.03 0.33 9.81 101.05 0.99 1.32 16 29 H 0.04 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.11 2.82 6.23 -51.93 -0.32 2.49 16 33 H 0.05 0.92 7.82 -51.93 -0.41 0.52 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 37 H 0.35 5.76 7.33 45.56 0.33 6.10 16 38 H 0.14 1.88 6.40 -52.48 -0.34 1.55 16 39 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 40 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.13 1.17 6.29 -52.49 -0.33 0.84 16 43 H 0.13 1.30 6.29 -52.49 -0.33 0.97 16 44 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 45 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 46 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -34.32 375.82 -6.08 -40.40 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.87 Total: 7.81 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 0.74 Total: 12.25 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.13 Total: -38.97 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -1.70 Total: -43.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.04 Total: 16.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.32 -6.08 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749156087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.134 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds