Wall clock time and date at job start Tue Mar 31 2020 23:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99905 * 2 1 4 4 H 1.48504 * 109.46921 * 240.00372 * 3 2 1 5 5 H 1.48493 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46803 * 120.00443 * 3 2 1 7 7 C 1.37872 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00240 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47685 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00449 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99836 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00297 * 180.02562 * 11 10 9 14 14 N 1.46897 * 109.47047 * 186.27493 * 13 11 10 15 15 C 1.46956 * 111.00277 * 66.37141 * 14 13 11 16 16 C 1.53047 * 109.36720 * 183.18638 * 15 14 13 17 17 N 1.46953 * 109.36553 * 301.59833 * 16 15 14 18 18 C 1.39844 * 111.00184 * 183.19198 * 17 16 15 19 19 C 1.38802 * 120.06102 * 299.99567 * 18 17 16 20 20 C 1.38353 * 119.92781 * 180.02562 * 19 18 17 21 21 F 1.35097 * 119.97462 * 180.02562 * 20 19 18 22 22 C 1.38488 * 120.05671 * 359.97438 * 20 19 18 23 23 C 1.38273 * 120.13635 * 0.02587 * 22 20 19 24 24 C 1.38277 * 120.07536 * 359.71771 * 23 22 20 25 25 F 1.35093 * 120.03365 * 180.27822 * 24 23 22 26 26 C 1.46948 * 110.88278 * 59.31802 * 17 16 15 27 27 C 1.46963 * 110.99945 * 190.16887 * 14 13 11 28 28 H 0.97004 * 119.99941 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46926 * 59.99520 * 9 7 2 30 30 H 1.09001 * 109.46915 * 300.00496 * 9 7 2 31 31 H 0.97007 * 119.99758 * 359.97438 * 10 9 7 32 32 H 1.08996 * 109.46990 * 66.27563 * 13 11 10 33 33 H 1.08998 * 109.46868 * 306.27610 * 13 11 10 34 34 H 1.09007 * 109.48915 * 63.21512 * 15 14 13 35 35 H 1.09007 * 109.48883 * 303.15822 * 15 14 13 36 36 H 1.09005 * 109.48828 * 181.62847 * 16 15 14 37 37 H 1.09001 * 109.50885 * 61.57887 * 16 15 14 38 38 H 1.08001 * 120.04204 * 359.97438 * 19 18 17 39 39 H 1.07995 * 119.93329 * 180.02562 * 22 20 19 40 40 H 1.07994 * 119.96608 * 180.02562 * 23 22 20 41 41 H 1.08999 * 109.48774 * 60.64781 * 26 17 16 42 42 H 1.08997 * 109.49360 * 180.71431 * 26 17 16 43 43 H 1.09001 * 109.48754 * 296.77565 * 27 14 13 44 44 H 1.08993 * 109.48628 * 56.84602 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7537 -4.8833 -0.0025 12 8 0.5614 -5.1049 -0.0017 13 6 2.7330 -6.0288 -0.0032 14 7 2.0048 -7.2954 -0.1553 15 6 1.3727 -7.3839 -1.4790 16 6 0.5607 -8.6781 -1.5683 17 7 1.4469 -9.8266 -1.3332 18 6 0.7537 -11.0324 -1.4781 19 6 -0.3371 -11.3093 -0.6657 20 6 -1.0206 -12.5034 -0.8111 21 9 -2.0827 -12.7737 -0.0212 22 6 -0.6175 -13.4215 -1.7663 23 6 0.4688 -13.1483 -2.5770 24 6 1.1527 -11.9543 -2.4401 25 9 2.2105 -11.6857 -3.2363 26 6 2.0790 -9.7382 -0.0096 27 6 2.8911 -8.4440 0.0797 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 3.1567 -3.4354 -0.0028 32 1 3.2834 -6.0368 0.9376 33 1 3.4313 -5.9093 -0.8316 34 1 2.1429 -7.3838 -2.2505 35 1 0.7120 -6.5292 -1.6244 36 1 0.1145 -8.7599 -2.5594 37 1 -0.2269 -8.6664 -0.8148 38 1 -0.6516 -10.5939 0.0797 39 1 -1.1527 -14.3528 -1.8784 40 1 0.7805 -13.8660 -3.3213 41 1 1.3090 -9.7382 0.7618 42 1 2.7398 -10.5928 0.1357 43 1 3.6783 -8.4560 -0.6741 44 1 3.3372 -8.3622 1.0708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750071160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:53 Heat of formation + Delta-G solvation = -77.819455 kcal Electronic energy + Delta-G solvation = -28734.786512 eV Core-core repulsion = 24323.414706 eV Total energy + Delta-G solvation = -4411.371806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.29159 -49.08496 -40.46835 -39.13063 -37.93364 -35.40933 -34.11218 -32.34136 -31.12372 -31.05989 -30.38491 -28.50744 -26.89655 -24.81634 -23.81416 -23.42314 -22.45775 -22.10841 -19.96483 -19.64957 -18.33664 -17.70576 -17.48424 -17.13905 -16.41174 -16.25477 -15.74552 -15.64566 -15.40856 -15.29758 -15.02774 -14.76892 -14.73764 -14.53617 -14.33420 -14.11630 -14.03295 -13.67330 -13.34914 -12.82078 -12.68428 -12.42628 -12.29234 -12.04251 -11.90841 -11.82635 -11.56866 -11.41718 -11.06091 -11.02027 -10.96137 -10.82048 -10.32098 -9.55664 -9.41926 -9.07478 -8.92812 -8.87435 -8.73498 -8.27420 -7.86689 -6.17300 -4.24406 0.49108 0.54808 2.87875 3.24519 3.25289 3.29384 3.30756 3.37613 3.60381 3.77723 3.85474 4.19120 4.23191 4.40541 4.43732 4.59835 4.68644 4.89063 4.98384 5.04336 5.13547 5.18608 5.24273 5.33192 5.42506 5.44099 5.49344 5.50463 5.54688 5.59300 5.61282 5.64092 5.74377 5.92957 6.02124 6.21315 6.52565 6.79798 6.96069 7.03747 7.31371 7.44201 7.51328 7.66642 7.96585 8.62915 8.78221 9.11654 9.42395 10.92782 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024372 B = 0.001955 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.576355 B =14321.411876 C =14804.790612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.715 5.715 11 C 0.498 3.502 12 O -0.539 6.539 13 C 0.036 3.964 14 N -0.521 5.521 15 C 0.056 3.944 16 C 0.064 3.936 17 N -0.502 5.502 18 C 0.088 3.912 19 C -0.154 4.154 20 C 0.098 3.902 21 F -0.135 7.135 22 C -0.129 4.129 23 C -0.123 4.123 24 C 0.114 3.886 25 F -0.123 7.123 26 C 0.063 3.937 27 C 0.057 3.943 28 H 0.266 0.734 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.389 0.611 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -27.900 -3.394 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.364 5.364 11 C 0.282 3.718 12 O -0.417 6.417 13 C -0.095 4.095 14 N -0.246 5.246 15 C -0.072 4.072 16 C -0.062 4.062 17 N -0.224 5.224 18 C -0.008 4.008 19 C -0.175 4.175 20 C 0.078 3.922 21 F -0.113 7.113 22 C -0.148 4.148 23 C -0.142 4.142 24 C 0.094 3.906 25 F -0.101 7.101 26 C -0.063 4.063 27 C -0.071 4.071 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.222 0.778 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.363 -27.857 -3.385 28.262 hybrid contribution 0.903 1.076 0.039 1.406 sum 4.266 -26.780 -3.346 27.324 Atomic orbital electron populations 1.69965 1.06101 1.27417 1.48783 1.24955 0.94923 0.99453 0.94709 0.86472 0.79413 0.82323 0.78680 1.20074 1.21075 1.20070 1.21193 0.93220 0.90498 1.53340 0.91971 1.19071 0.88258 0.81886 0.97661 1.46467 1.11089 1.06125 1.72746 1.20288 0.89567 0.84054 0.77916 1.90641 1.16606 1.84595 1.49842 1.22005 0.95269 0.89348 1.02860 1.61789 1.31523 1.00621 1.30630 1.22293 0.98387 0.97904 0.88625 1.22288 0.94000 0.88128 1.01766 1.59901 1.31693 0.99650 1.31186 1.18606 0.93948 0.92669 0.95547 1.21678 0.96741 0.97228 1.01869 1.17542 0.87005 0.95041 0.92591 1.91536 1.53536 1.93924 1.72325 1.21012 0.97974 1.00211 0.95591 1.20956 0.95921 0.96238 1.01133 1.17570 0.87350 0.94130 0.91570 1.91530 1.53405 1.93956 1.71187 1.22257 0.98124 0.98042 0.87875 1.22177 0.94059 0.89287 1.01564 0.92386 0.95643 0.95570 0.77823 0.88165 0.92354 0.94242 0.87863 0.89965 0.92706 0.83661 0.83647 0.83365 0.92947 0.90002 0.93712 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.25 6.61 5.43 -5.20 -0.03 6.58 16 10 N -0.72 -14.69 5.55 -61.47 -0.34 -15.03 16 11 C 0.50 9.61 7.39 -10.99 -0.08 9.53 16 12 O -0.54 -12.57 14.69 5.56 0.08 -12.48 16 13 C 0.04 0.50 5.45 -4.98 -0.03 0.48 16 14 N -0.52 -7.10 4.40 -235.91 -1.04 -8.14 16 15 C 0.06 0.77 5.27 -3.77 -0.02 0.75 16 16 C 0.06 0.78 5.31 -3.77 -0.02 0.76 16 17 N -0.50 -5.51 4.52 -170.89 -0.77 -6.28 16 18 C 0.09 0.88 4.73 -83.68 -0.40 0.48 16 19 C -0.15 -1.44 8.62 -39.33 -0.34 -1.78 16 20 C 0.10 0.85 7.30 -39.45 -0.29 0.56 16 21 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 22 C -0.13 -0.86 10.02 -39.48 -0.40 -1.26 16 23 C -0.12 -0.84 10.02 -39.55 -0.40 -1.24 16 24 C 0.11 1.07 7.31 -39.26 -0.29 0.78 16 25 F -0.12 -1.33 17.08 2.25 0.04 -1.29 16 26 C 0.06 0.63 5.36 -3.77 -0.02 0.61 16 27 C 0.06 0.60 5.61 -3.76 -0.02 0.58 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.39 6.80 8.32 -40.82 -0.34 6.46 16 32 H 0.10 1.18 8.02 -51.93 -0.42 0.76 16 33 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.04 0.53 8.14 -51.92 -0.42 0.10 16 35 H 0.10 1.73 6.09 -51.92 -0.32 1.41 16 36 H 0.08 0.94 8.13 -51.93 -0.42 0.51 16 37 H 0.05 0.70 7.24 -51.93 -0.38 0.33 16 38 H 0.15 1.37 7.06 -52.49 -0.37 1.00 16 39 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.05 0.54 7.44 -51.93 -0.39 0.16 16 42 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -32.29 371.40 -9.38 -41.66 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.96 Total: 3.26 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -2.74 Total: 3.52 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -1.41 Total: -54.73 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.08 Total: -2.55 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.29 -9.38 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750071160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.156 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds