Wall clock time and date at job start Tue Mar 31 2020 23:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99905 * 2 1 4 4 H 1.48504 * 109.46921 * 240.00372 * 3 2 1 5 5 H 1.48493 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46803 * 120.00443 * 3 2 1 7 7 C 1.37872 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00240 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47685 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00449 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99836 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00297 * 180.02562 * 11 10 9 14 14 N 1.46897 * 109.47047 * 186.27493 * 13 11 10 15 15 C 1.46956 * 111.00277 * 66.37141 * 14 13 11 16 16 C 1.53047 * 109.36720 * 183.18638 * 15 14 13 17 17 N 1.46953 * 109.36553 * 301.59833 * 16 15 14 18 18 C 1.39844 * 111.00184 * 183.19198 * 17 16 15 19 19 C 1.38802 * 120.06102 * 299.99567 * 18 17 16 20 20 C 1.38353 * 119.92781 * 180.02562 * 19 18 17 21 21 F 1.35097 * 119.97462 * 180.02562 * 20 19 18 22 22 C 1.38488 * 120.05671 * 359.97438 * 20 19 18 23 23 C 1.38273 * 120.13635 * 0.02587 * 22 20 19 24 24 C 1.38277 * 120.07536 * 359.71771 * 23 22 20 25 25 F 1.35093 * 120.03365 * 180.27822 * 24 23 22 26 26 C 1.46948 * 110.88278 * 59.31802 * 17 16 15 27 27 C 1.46963 * 110.99945 * 190.16887 * 14 13 11 28 28 H 0.97004 * 119.99941 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.46926 * 59.99520 * 9 7 2 30 30 H 1.09001 * 109.46915 * 300.00496 * 9 7 2 31 31 H 0.97007 * 119.99758 * 359.97438 * 10 9 7 32 32 H 1.08996 * 109.46990 * 66.27563 * 13 11 10 33 33 H 1.08998 * 109.46868 * 306.27610 * 13 11 10 34 34 H 1.09007 * 109.48915 * 63.21512 * 15 14 13 35 35 H 1.09007 * 109.48883 * 303.15822 * 15 14 13 36 36 H 1.09005 * 109.48828 * 181.62847 * 16 15 14 37 37 H 1.09001 * 109.50885 * 61.57887 * 16 15 14 38 38 H 1.08001 * 120.04204 * 359.97438 * 19 18 17 39 39 H 1.07995 * 119.93329 * 180.02562 * 22 20 19 40 40 H 1.07994 * 119.96608 * 180.02562 * 23 22 20 41 41 H 1.08999 * 109.48774 * 60.64781 * 26 17 16 42 42 H 1.08997 * 109.49360 * 180.71431 * 26 17 16 43 43 H 1.09001 * 109.48754 * 296.77565 * 27 14 13 44 44 H 1.08993 * 109.48628 * 56.84602 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7537 -4.8833 -0.0025 12 8 0.5614 -5.1049 -0.0017 13 6 2.7330 -6.0288 -0.0032 14 7 2.0048 -7.2954 -0.1553 15 6 1.3727 -7.3839 -1.4790 16 6 0.5607 -8.6781 -1.5683 17 7 1.4469 -9.8266 -1.3332 18 6 0.7537 -11.0324 -1.4781 19 6 -0.3371 -11.3093 -0.6657 20 6 -1.0206 -12.5034 -0.8111 21 9 -2.0827 -12.7737 -0.0212 22 6 -0.6175 -13.4215 -1.7663 23 6 0.4688 -13.1483 -2.5770 24 6 1.1527 -11.9543 -2.4401 25 9 2.2105 -11.6857 -3.2363 26 6 2.0790 -9.7382 -0.0096 27 6 2.8911 -8.4440 0.0797 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5566 -0.8903 30 1 0.6247 -2.5570 0.8896 31 1 3.1567 -3.4354 -0.0028 32 1 3.2834 -6.0368 0.9376 33 1 3.4313 -5.9093 -0.8316 34 1 2.1429 -7.3838 -2.2505 35 1 0.7120 -6.5292 -1.6244 36 1 0.1145 -8.7599 -2.5594 37 1 -0.2269 -8.6664 -0.8148 38 1 -0.6516 -10.5939 0.0797 39 1 -1.1527 -14.3528 -1.8784 40 1 0.7805 -13.8660 -3.3213 41 1 1.3090 -9.7382 0.7618 42 1 2.7398 -10.5928 0.1357 43 1 3.6783 -8.4560 -0.6741 44 1 3.3372 -8.3622 1.0708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750071160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:52 Heat of formation + Delta-G solvation = -100.975281 kcal Electronic energy + Delta-G solvation = -28735.790624 eV Core-core repulsion = 24323.414706 eV Total energy + Delta-G solvation = -4412.375918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.00422 -49.83209 -41.36276 -40.46334 -38.95237 -36.45866 -35.94352 -34.33536 -32.02920 -31.89447 -31.14878 -29.91935 -28.40165 -26.00002 -24.75638 -24.42586 -23.91327 -22.99664 -21.35399 -20.85663 -19.06976 -18.92061 -18.42534 -18.18385 -17.54034 -17.37968 -16.99161 -16.83862 -16.61150 -16.39805 -16.19899 -15.89726 -15.70972 -15.40811 -15.34758 -15.31508 -15.13017 -14.77140 -14.27857 -14.19097 -13.99232 -13.84491 -13.49630 -13.31183 -12.97308 -12.93491 -12.73477 -12.63717 -12.56712 -12.35214 -12.24107 -12.07249 -11.85505 -11.50696 -10.78693 -10.66200 -10.19921 -9.82218 -9.78598 -9.57302 -9.31254 -8.28912 -6.45629 -0.16302 -0.09723 1.42917 1.47039 1.55184 1.81598 2.24003 2.26058 2.43445 2.50125 3.00607 3.05751 3.12204 3.17268 3.56082 3.75681 3.86980 3.91155 4.01478 4.07179 4.13871 4.19700 4.28263 4.36606 4.40269 4.49603 4.55617 4.72212 4.77639 4.83047 4.86895 4.92659 4.93639 5.01022 5.06002 5.11990 5.25181 5.49519 5.55189 5.63395 5.70092 5.84578 5.87702 6.05542 6.12221 6.65722 6.96908 7.24101 7.55092 8.82956 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024372 B = 0.001955 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.576355 B =14321.411876 C =14804.790612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.270 3.730 10 N -0.710 5.710 11 C 0.494 3.506 12 O -0.585 6.585 13 C 0.051 3.949 14 N -0.541 5.541 15 C 0.062 3.938 16 C 0.072 3.928 17 N -0.503 5.503 18 C 0.072 3.928 19 C -0.161 4.161 20 C 0.087 3.913 21 F -0.143 7.143 22 C -0.114 4.114 23 C -0.109 4.109 24 C 0.102 3.898 25 F -0.133 7.133 26 C 0.063 3.937 27 C 0.061 3.939 28 H 0.268 0.732 29 H -0.015 1.015 30 H -0.015 1.015 31 H 0.408 0.592 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.135 0.865 39 H 0.176 0.824 40 H 0.180 0.820 41 H 0.044 0.956 42 H 0.100 0.900 43 H 0.053 0.947 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.092 -29.534 -3.691 30.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.147 3.853 10 N -0.361 5.361 11 C 0.281 3.719 12 O -0.465 6.465 13 C -0.079 4.079 14 N -0.266 5.266 15 C -0.067 4.067 16 C -0.054 4.054 17 N -0.225 5.225 18 C -0.023 4.023 19 C -0.182 4.182 20 C 0.067 3.933 21 F -0.122 7.122 22 C -0.133 4.133 23 C -0.128 4.128 24 C 0.081 3.919 25 F -0.111 7.111 26 C -0.063 4.063 27 C -0.066 4.066 28 H 0.077 0.923 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.244 0.756 32 H 0.150 0.850 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.153 0.847 39 H 0.194 0.806 40 H 0.197 0.803 41 H 0.062 0.938 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.115 -29.534 -3.679 30.384 hybrid contribution -0.013 1.459 0.128 1.465 sum 6.102 -28.075 -3.551 28.949 Atomic orbital electron populations 1.70137 1.08288 1.28589 1.49979 1.26086 0.95787 1.03970 0.93912 0.85205 0.77896 0.76584 0.79521 1.18631 1.21205 1.18606 1.21606 0.94334 0.90609 1.52853 0.89747 1.18474 0.88658 0.84355 0.93855 1.46196 1.11151 1.05541 1.73246 1.21362 0.90022 0.84722 0.75835 1.90627 1.19238 1.85255 1.51419 1.21933 0.93596 0.86885 1.05529 1.61735 1.32912 1.01567 1.30402 1.22105 0.98049 0.97243 0.89259 1.22111 0.93620 0.88303 1.01380 1.59897 1.31346 0.99546 1.31728 1.18638 0.94561 0.92611 0.96502 1.21585 0.97050 0.97628 1.01919 1.17746 0.86932 0.95374 0.93239 1.91516 1.53968 1.93954 1.72732 1.21334 0.97452 1.00548 0.93957 1.21270 0.94903 0.95545 1.01055 1.17805 0.87580 0.95016 0.91456 1.91503 1.54008 1.94158 1.71478 1.22319 0.98129 0.98612 0.87247 1.22270 0.93590 0.87815 1.02966 0.92293 0.99708 0.99705 0.75639 0.85011 0.89683 0.93633 0.91614 0.89824 0.94240 0.84710 0.80639 0.80311 0.93775 0.88143 0.92853 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.98 42.30 29.54 68.60 2.03 44.33 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.56 -30.23 9.28 25.60 0.24 -29.99 16 8 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.83 5.43 85.63 0.46 15.30 16 10 N -0.71 -29.61 5.55 -466.80 -2.59 -32.20 16 11 C 0.49 19.41 7.39 87.66 0.65 20.06 16 12 O -0.59 -28.83 14.69 -3.03 -0.04 -28.87 16 13 C 0.05 1.33 5.45 85.56 0.47 1.79 16 14 N -0.54 -14.36 4.40 -900.27 -3.96 -18.33 16 15 C 0.06 1.75 5.27 86.31 0.45 2.21 16 16 C 0.07 1.82 5.31 86.31 0.46 2.28 16 17 N -0.50 -10.83 4.52 -694.59 -3.14 -13.96 16 18 C 0.07 1.40 4.73 38.20 0.18 1.58 16 19 C -0.16 -3.01 8.62 22.43 0.19 -2.81 16 20 C 0.09 1.42 7.30 22.36 0.16 1.58 16 21 F -0.14 -2.69 17.27 44.97 0.78 -1.91 16 22 C -0.11 -1.22 10.02 22.34 0.22 -1.00 16 23 C -0.11 -1.17 10.02 22.29 0.22 -0.95 16 24 C 0.10 1.74 7.31 22.48 0.16 1.91 16 25 F -0.13 -2.68 17.08 44.97 0.77 -1.92 16 26 C 0.06 1.18 5.36 86.31 0.46 1.65 16 27 C 0.06 1.14 5.61 86.31 0.48 1.63 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 30 H -0.02 -0.94 8.14 -2.39 -0.02 -0.95 16 31 H 0.41 13.80 8.32 -92.70 -0.77 13.03 16 32 H 0.13 2.65 8.02 -2.39 -0.02 2.63 16 33 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 34 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 2.36 6.09 -2.38 -0.01 2.35 16 36 H 0.08 2.01 8.13 -2.38 -0.02 1.99 16 37 H 0.04 1.09 7.24 -2.39 -0.02 1.07 16 38 H 0.14 2.72 7.06 -2.91 -0.02 2.70 16 39 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.04 0.90 7.44 -2.39 -0.02 0.88 16 42 H 0.10 1.52 8.13 -2.39 -0.02 1.50 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.11 1.55 8.07 -2.39 -0.02 1.53 16 Total: -1.00 -74.48 371.40 -0.33 -74.80 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.27 Total: 18.50 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.29 Total: 15.80 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -9.40 Total: -120.74 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.04 Total: -28.87 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 1.54 Total: -3.83 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -74.48 -0.33 -74.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750071160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.171 kcal (2) G-P(sol) polarization free energy of solvation -74.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds