Wall clock time and date at job start Tue Mar 31 2020 23:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48502 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47170 * 299.99458 * 3 2 1 6 6 H 1.48496 * 109.47476 * 59.99831 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00060 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99973 * 179.97438 * 10 9 7 12 12 O 1.21588 * 120.00151 * 359.73121 * 11 10 9 13 13 N 1.34784 * 119.99935 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72905 * 13 11 10 15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.64826 * 54.29465 * 15 14 13 17 17 C 1.54599 * 110.72239 * 291.13986 * 15 14 13 18 18 C 1.53993 * 105.14209 * 219.68695 * 17 15 14 19 19 N 1.47897 * 107.05517 * 358.77789 * 18 17 15 20 20 C 1.39826 * 110.99684 * 145.84421 * 19 18 17 21 21 C 1.38891 * 120.03655 * 119.84958 * 20 19 18 22 22 C 1.38133 * 119.99227 * 179.73833 * 21 20 19 23 23 C 1.38424 * 120.07310 * 0.51295 * 22 21 20 24 24 F 1.35093 * 119.96264 * 179.73864 * 23 22 21 25 25 C 1.38662 * 120.07671 * 359.76567 * 23 22 21 26 26 F 1.35096 * 119.99757 * 179.97438 * 25 23 22 27 27 C 1.38328 * 120.00653 * 359.97438 * 25 23 22 28 28 C 1.48732 * 105.94670 * 25.20019 * 19 18 17 29 29 H 0.97003 * 120.00435 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46987 * 59.99452 * 9 7 2 31 31 H 1.08997 * 109.46849 * 300.00214 * 9 7 2 32 32 H 0.97004 * 120.00009 * 0.02562 * 10 9 7 33 33 H 0.97005 * 119.99846 * 359.72693 * 13 11 10 34 34 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 35 35 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 36 36 H 1.09001 * 110.30928 * 338.60689 * 17 15 14 37 37 H 1.09001 * 110.30406 * 100.67303 * 17 15 14 38 38 H 1.09001 * 109.91571 * 118.13312 * 18 17 15 39 39 H 1.09003 * 109.91607 * 239.22485 * 18 17 15 40 40 H 1.08002 * 120.00561 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.96956 * 180.25577 * 22 21 20 42 42 H 1.08000 * 120.04240 * 180.02562 * 27 25 23 43 43 H 1.08994 * 110.83604 * 202.57045 * 28 19 18 44 44 H 1.09001 * 110.58095 * 79.38348 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5583 -5.1055 0.0065 13 7 2.6296 -5.9078 0.0016 14 6 2.1412 -7.2890 0.0081 15 6 3.3313 -8.2506 0.0080 16 1 4.0069 -8.0262 0.8333 17 6 4.0803 -8.1938 -1.3432 18 6 4.4593 -9.6534 -1.6548 19 7 3.9768 -10.4774 -0.5254 20 6 3.5582 -11.7364 -0.9667 21 6 4.1742 -12.8832 -0.4822 22 6 3.7563 -14.1267 -0.9147 23 6 2.7310 -14.2313 -1.8388 24 9 2.3276 -15.4484 -2.2642 25 6 2.1178 -13.0882 -2.3288 26 9 1.1177 -13.1921 -3.2310 27 6 2.5301 -11.8415 -1.8939 28 6 2.8480 -9.7209 0.0794 29 1 -0.4851 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 3.1567 -3.4355 0.0009 33 1 3.5833 -5.7305 -0.0024 34 1 1.5389 -7.4571 0.9009 35 1 1.5325 -7.4634 -0.8790 36 1 3.4276 -7.7980 -2.1213 37 1 4.9764 -7.5796 -1.2534 38 1 3.9785 -9.9726 -2.5794 39 1 5.5415 -9.7441 -1.7488 40 1 4.9772 -12.8027 0.2355 41 1 4.2328 -15.0183 -0.5346 42 1 2.0526 -10.9508 -2.2748 43 1 2.6886 -10.0237 1.1142 44 1 1.9388 -9.8559 -0.5065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787371806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:22 Heat of formation + Delta-G solvation = -87.964660 kcal Electronic energy + Delta-G solvation = -27906.287577 eV Core-core repulsion = 23494.475842 eV Total energy + Delta-G solvation = -4411.811735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.89503 -48.96743 -40.81716 -39.26086 -38.14958 -35.07641 -34.04818 -32.61006 -32.08505 -31.34209 -29.87940 -28.84104 -27.21608 -25.14525 -24.03148 -23.03656 -22.44849 -21.46438 -20.58617 -20.09914 -18.59332 -18.06760 -17.75563 -17.61382 -16.75004 -16.51217 -16.36074 -15.87626 -15.45029 -15.37575 -14.98648 -14.87896 -14.68600 -14.56397 -14.41629 -13.92141 -13.73152 -13.60280 -13.46035 -13.10537 -12.98563 -12.42402 -12.37377 -12.11420 -11.97315 -11.85912 -11.80190 -11.54010 -11.17589 -10.94418 -10.91071 -10.89731 -10.30782 -9.61001 -9.43812 -9.35403 -9.19424 -9.07874 -8.80152 -8.68660 -7.76278 -6.15690 -4.22209 0.31843 0.44159 2.74344 3.12737 3.23673 3.28696 3.31872 3.34255 3.42112 3.83066 3.94315 4.03317 4.19186 4.31424 4.35484 4.40988 4.45910 4.52366 4.79238 4.92275 4.99846 5.08981 5.19591 5.20462 5.21076 5.26286 5.28975 5.36861 5.46970 5.48004 5.57952 5.62600 5.75436 5.87664 5.95601 6.08703 6.20512 6.71215 6.83511 7.11059 7.51315 7.55118 7.57081 7.90353 8.04053 8.76588 8.93999 9.33022 9.47936 10.94590 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.030428 B = 0.001638 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.984157 B =17085.112791 C =17527.702403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.692 3.308 12 O -0.602 6.602 13 N -0.757 5.757 14 C 0.151 3.849 15 C -0.102 4.102 16 H 0.094 0.906 17 C -0.129 4.129 18 C 0.038 3.962 19 N -0.481 5.481 20 C 0.105 3.895 21 C -0.075 4.075 22 C -0.119 4.119 23 C 0.062 3.938 24 F -0.129 7.129 25 C 0.079 3.921 26 F -0.127 7.127 27 C -0.159 4.159 28 C 0.046 3.954 29 H 0.265 0.735 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.386 0.614 33 H 0.391 0.609 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.094 0.906 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.590 -28.680 -1.975 31.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.414 5.414 14 C 0.025 3.975 15 C -0.121 4.121 16 H 0.112 0.888 17 C -0.167 4.167 18 C -0.088 4.088 19 N -0.202 5.202 20 C 0.010 3.990 21 C -0.094 4.094 22 C -0.138 4.138 23 C 0.041 3.959 24 F -0.107 7.107 25 C 0.058 3.942 26 F -0.106 7.106 27 C -0.180 4.180 28 C -0.081 4.081 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.218 0.782 33 H 0.224 0.776 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.112 0.888 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.638 -28.836 -1.651 31.139 hybrid contribution 0.331 0.943 -0.918 1.357 sum 11.969 -27.892 -2.568 30.460 Atomic orbital electron populations 1.69988 1.06091 1.27156 1.49030 1.24952 0.94915 0.99423 0.94791 0.86356 0.79782 0.82985 0.77729 1.19680 1.20827 1.20818 1.21268 0.93299 0.90439 1.52987 0.91893 1.18982 0.87799 0.81105 0.97602 1.45712 1.10763 1.04438 1.77223 1.16155 0.85184 0.81080 0.78405 1.90877 1.14294 1.84263 1.58652 1.45093 1.08797 1.04968 1.82572 1.20999 0.94561 0.79715 1.02219 1.22333 0.97358 0.93676 0.98746 0.88754 1.22546 1.01236 0.95599 0.97329 1.23040 1.01629 0.92419 0.91718 1.62576 1.30922 1.00040 1.26691 1.18898 0.93576 0.92250 0.94264 1.20986 0.99668 0.89409 0.99345 1.21076 0.96136 0.99730 0.96863 1.17738 0.98691 0.79504 0.99928 1.91538 1.89752 1.40781 1.88672 1.17537 0.90118 0.93287 0.93225 1.91556 1.57732 1.96844 1.64442 1.21696 0.99790 0.96516 0.99986 1.23394 0.91812 0.91840 1.01030 0.92518 0.95781 0.95737 0.78183 0.77559 0.91677 0.91982 0.90470 0.90233 0.92924 0.89525 0.83343 0.83201 0.83642 0.88795 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.11 5.43 -5.19 -0.03 7.08 16 10 N -0.73 -15.37 5.55 -66.41 -0.37 -15.74 16 11 C 0.69 13.95 8.57 -86.91 -0.74 13.21 16 12 O -0.60 -14.93 16.34 5.29 0.09 -14.85 16 13 N -0.76 -10.42 5.44 -65.23 -0.35 -10.78 16 14 C 0.15 1.73 5.01 -4.04 -0.02 1.71 16 15 C -0.10 -0.78 3.09 -88.76 -0.27 -1.06 16 16 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 17 C -0.13 -0.90 6.31 -25.37 -0.16 -1.06 16 18 C 0.04 0.25 6.52 -2.76 -0.02 0.23 16 19 N -0.48 -3.36 5.27 -166.98 -0.88 -4.24 16 20 C 0.10 0.74 4.85 -83.75 -0.41 0.33 16 21 C -0.08 -0.43 9.97 -39.38 -0.39 -0.82 16 22 C -0.12 -0.68 10.02 -39.55 -0.40 -1.08 16 23 C 0.06 0.50 7.30 -39.36 -0.29 0.21 16 24 F -0.13 -1.21 17.18 2.25 0.04 -1.17 16 25 C 0.08 0.70 7.30 -39.39 -0.29 0.42 16 26 F -0.13 -1.34 17.18 2.25 0.04 -1.30 16 27 C -0.16 -1.23 7.88 -39.33 -0.31 -1.54 16 28 C 0.05 0.33 5.89 -1.79 -0.01 0.32 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.39 6.88 8.34 -40.82 -0.34 6.54 16 33 H 0.39 4.20 8.42 -40.82 -0.34 3.86 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 36 H 0.08 0.62 7.76 -51.93 -0.40 0.21 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.35 6.69 -51.93 -0.35 0.00 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.15 1.06 7.06 -52.49 -0.37 0.69 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -33.61 375.83 -9.71 -43.33 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.90 Total: 4.10 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.75 Total: 4.61 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.87 Total: -56.13 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.09 Total: -14.85 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.08 Total: -2.47 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.61 -9.71 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.639 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds