Wall clock time and date at job start Tue Mar 31 2020 23:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48502 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47170 * 299.99458 * 3 2 1 6 6 H 1.48496 * 109.47476 * 59.99831 * 3 2 1 7 7 C 1.37878 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00060 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99973 * 179.97438 * 10 9 7 12 12 O 1.21588 * 120.00151 * 359.73121 * 11 10 9 13 13 N 1.34784 * 119.99935 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72905 * 13 11 10 15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.64826 * 54.29465 * 15 14 13 17 17 C 1.54599 * 110.72239 * 291.13986 * 15 14 13 18 18 C 1.53993 * 105.14209 * 219.68695 * 17 15 14 19 19 N 1.47897 * 107.05517 * 358.77789 * 18 17 15 20 20 C 1.39826 * 110.99684 * 145.84421 * 19 18 17 21 21 C 1.38891 * 120.03655 * 119.84958 * 20 19 18 22 22 C 1.38133 * 119.99227 * 179.73833 * 21 20 19 23 23 C 1.38424 * 120.07310 * 0.51295 * 22 21 20 24 24 F 1.35093 * 119.96264 * 179.73864 * 23 22 21 25 25 C 1.38662 * 120.07671 * 359.76567 * 23 22 21 26 26 F 1.35096 * 119.99757 * 179.97438 * 25 23 22 27 27 C 1.38328 * 120.00653 * 359.97438 * 25 23 22 28 28 C 1.48732 * 105.94670 * 25.20019 * 19 18 17 29 29 H 0.97003 * 120.00435 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46987 * 59.99452 * 9 7 2 31 31 H 1.08997 * 109.46849 * 300.00214 * 9 7 2 32 32 H 0.97004 * 120.00009 * 0.02562 * 10 9 7 33 33 H 0.97005 * 119.99846 * 359.72693 * 13 11 10 34 34 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 35 35 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 36 36 H 1.09001 * 110.30928 * 338.60689 * 17 15 14 37 37 H 1.09001 * 110.30406 * 100.67303 * 17 15 14 38 38 H 1.09001 * 109.91571 * 118.13312 * 18 17 15 39 39 H 1.09003 * 109.91607 * 239.22485 * 18 17 15 40 40 H 1.08002 * 120.00561 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.96956 * 180.25577 * 22 21 20 42 42 H 1.08000 * 120.04240 * 180.02562 * 27 25 23 43 43 H 1.08994 * 110.83604 * 202.57045 * 28 19 18 44 44 H 1.09001 * 110.58095 * 79.38348 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5583 -5.1055 0.0065 13 7 2.6296 -5.9078 0.0016 14 6 2.1412 -7.2890 0.0081 15 6 3.3313 -8.2506 0.0080 16 1 4.0069 -8.0262 0.8333 17 6 4.0803 -8.1938 -1.3432 18 6 4.4593 -9.6534 -1.6548 19 7 3.9768 -10.4774 -0.5254 20 6 3.5582 -11.7364 -0.9667 21 6 4.1742 -12.8832 -0.4822 22 6 3.7563 -14.1267 -0.9147 23 6 2.7310 -14.2313 -1.8388 24 9 2.3276 -15.4484 -2.2642 25 6 2.1178 -13.0882 -2.3288 26 9 1.1177 -13.1921 -3.2310 27 6 2.5301 -11.8415 -1.8939 28 6 2.8480 -9.7209 0.0794 29 1 -0.4851 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 3.1567 -3.4355 0.0009 33 1 3.5833 -5.7305 -0.0024 34 1 1.5389 -7.4571 0.9009 35 1 1.5325 -7.4634 -0.8790 36 1 3.4276 -7.7980 -2.1213 37 1 4.9764 -7.5796 -1.2534 38 1 3.9785 -9.9726 -2.5794 39 1 5.5415 -9.7441 -1.7488 40 1 4.9772 -12.8027 0.2355 41 1 4.2328 -15.0183 -0.5346 42 1 2.0526 -10.9508 -2.2748 43 1 2.6886 -10.0237 1.1142 44 1 1.9388 -9.8559 -0.5065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787371806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:21 Heat of formation + Delta-G solvation = -111.658703 kcal Electronic energy + Delta-G solvation = -27907.315028 eV Core-core repulsion = 23494.475842 eV Total energy + Delta-G solvation = -4412.839186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.58058 -49.66154 -41.44012 -40.76253 -38.85805 -36.38114 -35.82300 -34.36856 -33.21902 -31.88851 -30.66619 -29.54338 -28.97509 -26.25247 -24.66406 -24.33143 -23.61208 -22.17461 -21.65610 -21.30295 -19.72436 -19.18390 -18.39620 -18.29618 -17.94852 -17.49948 -17.40303 -17.02386 -16.71695 -16.43275 -16.19463 -16.08850 -15.59272 -15.28019 -15.09207 -15.03550 -14.88518 -14.60868 -14.40466 -14.25851 -14.03086 -13.88457 -13.59455 -13.08282 -12.98735 -12.84649 -12.74690 -12.68407 -12.40528 -12.20161 -12.19390 -11.93380 -11.54643 -11.42902 -11.23316 -10.80434 -10.25040 -10.14865 -9.75868 -9.66845 -9.55291 -8.27180 -6.43456 -0.24601 -0.09745 1.44855 1.46283 1.59455 1.89774 2.22074 2.27558 2.40736 2.62435 2.79490 3.08051 3.21726 3.44776 3.53253 3.65950 3.74711 3.80535 3.91485 3.95580 4.23236 4.35617 4.40981 4.47011 4.60860 4.64153 4.70657 4.77962 4.80862 4.92964 4.99746 5.00993 5.09710 5.12127 5.24156 5.25475 5.28966 5.50916 5.53857 5.57584 5.62367 5.70412 5.87069 6.16113 6.30161 6.69062 7.26251 7.35383 7.75875 8.85377 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.030428 B = 0.001638 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.984157 B =17085.112791 C =17527.702403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.284 3.716 10 N -0.723 5.723 11 C 0.690 3.310 12 O -0.652 6.652 13 N -0.728 5.728 14 C 0.149 3.851 15 C -0.087 4.087 16 H 0.109 0.891 17 C -0.127 4.127 18 C 0.039 3.961 19 N -0.475 5.475 20 C 0.100 3.900 21 C -0.064 4.064 22 C -0.105 4.105 23 C 0.047 3.953 24 F -0.140 7.140 25 C 0.055 3.945 26 F -0.145 7.145 27 C -0.161 4.161 28 C 0.045 3.955 29 H 0.268 0.732 30 H -0.016 1.016 31 H -0.015 1.015 32 H 0.405 0.595 33 H 0.412 0.588 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.143 0.857 43 H 0.102 0.898 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.293 -28.975 -1.150 33.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.103 0.897 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.389 3.611 12 O -0.535 6.535 13 N -0.386 5.386 14 C 0.025 3.975 15 C -0.106 4.106 16 H 0.127 0.873 17 C -0.165 4.165 18 C -0.087 4.087 19 N -0.196 5.196 20 C 0.005 3.995 21 C -0.083 4.083 22 C -0.124 4.124 23 C 0.027 3.973 24 F -0.119 7.119 25 C 0.035 3.965 26 F -0.123 7.123 27 C -0.182 4.182 28 C -0.082 4.082 29 H 0.077 0.923 30 H 0.002 0.998 31 H 0.003 0.997 32 H 0.241 0.759 33 H 0.248 0.752 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.191 0.809 41 H 0.196 0.804 42 H 0.160 0.840 43 H 0.120 0.880 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.433 -29.188 -0.827 33.028 hybrid contribution -0.834 0.934 -1.165 1.710 sum 14.599 -28.255 -1.993 31.866 Atomic orbital electron populations 1.70152 1.08302 1.28468 1.50096 1.26077 0.95780 1.03919 0.93940 0.85084 0.79100 0.77244 0.77594 1.17532 1.20567 1.20532 1.21647 0.94372 0.90433 1.52656 0.89682 1.18403 0.88157 0.83459 0.93891 1.45275 1.10876 1.03826 1.77684 1.16348 0.85120 0.81679 0.77936 1.90844 1.16960 1.85014 1.60723 1.44826 1.09017 1.04424 1.80294 1.21147 0.96285 0.78898 1.01203 1.22197 0.95787 0.92787 0.99864 0.87271 1.22539 1.01435 0.96263 0.96263 1.23069 1.02336 0.91867 0.91459 1.62653 1.30329 0.99967 1.26686 1.19050 0.93502 0.92820 0.94161 1.21264 0.99503 0.88643 0.98857 1.21380 0.94762 1.00941 0.95332 1.18026 0.99633 0.78819 1.00866 1.91506 1.90042 1.41357 1.88976 1.17812 0.90579 0.94235 0.93924 1.91503 1.58626 1.96974 1.65231 1.21698 1.00210 0.95974 1.00354 1.23394 0.91789 0.91472 1.01503 0.92291 0.99784 0.99717 0.75929 0.75158 0.92623 0.93272 0.91724 0.88708 0.93330 0.88216 0.80904 0.80378 0.83974 0.87972 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.99 42.03 29.54 68.60 2.03 44.05 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -29.96 9.28 25.60 0.24 -29.73 16 8 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.28 15.75 5.43 85.63 0.46 16.21 16 10 N -0.72 -30.60 5.55 -482.30 -2.68 -33.27 16 11 C 0.69 28.08 8.57 179.05 1.53 29.62 16 12 O -0.65 -33.65 16.34 -3.99 -0.07 -33.72 16 13 N -0.73 -19.23 5.44 -478.53 -2.60 -21.83 16 14 C 0.15 3.32 5.01 86.38 0.43 3.76 16 15 C -0.09 -1.15 3.09 -9.59 -0.03 -1.18 16 16 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 17 C -0.13 -1.48 6.31 31.47 0.20 -1.28 16 18 C 0.04 0.42 6.52 86.45 0.56 0.98 16 19 N -0.48 -5.47 5.27 -682.22 -3.60 -9.06 16 20 C 0.10 1.21 4.85 38.17 0.19 1.39 16 21 C -0.06 -0.54 9.97 22.40 0.22 -0.32 16 22 C -0.11 -0.95 10.02 22.29 0.22 -0.73 16 23 C 0.05 0.73 7.30 22.42 0.16 0.89 16 24 F -0.14 -2.61 17.18 44.97 0.77 -1.84 16 25 C 0.06 1.00 7.30 22.39 0.16 1.16 16 26 F -0.14 -3.23 17.18 44.97 0.77 -2.46 16 27 C -0.16 -2.44 7.88 22.44 0.18 -2.27 16 28 C 0.04 0.57 5.89 86.61 0.51 1.08 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 31 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 32 H 0.41 13.85 8.34 -92.71 -0.77 13.08 16 33 H 0.41 7.75 8.42 -92.70 -0.78 6.97 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.25 8.02 -2.39 -0.02 1.23 16 36 H 0.06 0.95 7.76 -2.39 -0.02 0.93 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 0.58 6.69 -2.39 -0.02 0.56 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 40 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 41 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.14 2.15 7.06 -2.91 -0.02 2.13 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.05 0.74 6.57 -2.39 -0.02 0.72 16 Total: -1.00 -76.43 375.83 -0.07 -76.50 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -0.50 Total: 17.45 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 5.51 Total: 20.18 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -8.59 Total: -120.16 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.07 Total: -33.72 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 1.54 Total: -4.30 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -76.43 -0.07 -76.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.158 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds