Wall clock time and date at job start Tue Mar 31 2020 22:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99981 * 2 1 4 4 C 1.53001 * 109.46897 * 202.74540 * 3 2 1 5 5 O 1.42901 * 109.47468 * 300.00253 * 4 3 2 6 6 C 1.42899 * 113.99776 * 180.02562 * 5 4 3 7 7 C 1.53009 * 109.46663 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46620 * 64.99946 * 7 6 5 9 9 C 1.34773 * 119.99708 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00153 * 0.02562 * 9 8 7 11 11 C 1.47542 * 119.99945 * 180.02562 * 9 8 7 12 12 C 1.39661 * 120.19825 * 0.02562 * 11 9 8 13 13 C 1.37826 * 119.91988 * 180.02562 * 12 11 9 14 14 C 1.38565 * 120.32230 * 0.02562 * 13 12 11 15 15 C 1.38024 * 120.40337 * 359.97438 * 14 13 12 16 16 C 1.38832 * 120.07248 * 359.95713 * 15 14 13 17 17 O 1.35517 * 120.15989 * 180.02562 * 16 15 14 18 18 C 1.34814 * 117.00281 * 354.66773 * 17 16 15 19 19 H 1.08004 * 119.99744 * 5.37233 * 18 17 16 20 20 C 1.38704 * 120.00173 * 185.36625 * 18 17 16 21 21 N 1.31520 * 120.00091 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00042 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46986 * 89.99850 * 22 20 18 24 24 H 1.48494 * 109.47056 * 210.00292 * 22 20 18 25 25 H 1.48495 * 109.47015 * 330.00292 * 22 20 18 26 26 O 1.42902 * 109.47114 * 82.74841 * 3 2 1 27 27 C 1.42891 * 113.99886 * 285.50431 * 26 3 2 28 28 H 1.09006 * 109.47036 * 305.68212 * 1 2 3 29 29 H 1.08999 * 109.47134 * 65.67371 * 1 2 3 30 30 H 1.08997 * 109.46960 * 185.67831 * 1 2 3 31 31 H 1.09001 * 109.47046 * 322.74332 * 3 2 1 32 32 H 1.08997 * 109.47103 * 179.97438 * 4 3 2 33 33 H 1.09006 * 109.47344 * 60.00020 * 4 3 2 34 34 H 1.08997 * 109.47238 * 60.00176 * 6 5 4 35 35 H 1.08996 * 109.47235 * 299.99482 * 6 5 4 36 36 H 1.08990 * 109.47525 * 305.00413 * 7 6 5 37 37 H 1.08999 * 109.47095 * 184.99509 * 7 6 5 38 38 H 0.97002 * 120.00310 * 0.02562 * 8 7 6 39 39 H 1.08004 * 120.03548 * 0.27202 * 12 11 9 40 40 H 1.08004 * 119.83542 * 179.97438 * 13 12 11 41 41 H 1.08008 * 119.79554 * 179.97438 * 14 13 12 42 42 H 1.08005 * 119.96256 * 179.97438 * 15 14 13 43 43 H 0.96995 * 120.00033 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.47437 * 317.46860 * 27 26 3 45 45 H 1.09004 * 109.46903 * 77.46645 * 27 26 3 46 46 H 1.09003 * 109.47540 * 197.46389 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4330 1.2303 -0.5577 5 8 4.2189 0.3589 0.2578 6 6 5.5724 0.2184 -0.1784 7 6 6.3158 -0.7310 0.7635 8 7 5.7349 -2.0722 0.6632 9 6 6.2331 -3.0797 1.4070 10 8 7.1643 -2.8753 2.1617 11 6 5.6485 -4.4305 1.3056 12 6 4.5791 -4.6700 0.4398 13 6 4.0371 -5.9340 0.3499 14 6 4.5475 -6.9701 1.1155 15 6 5.6040 -6.7484 1.9755 16 6 6.1636 -5.4820 2.0780 17 8 7.2013 -5.2624 2.9214 18 6 7.5729 -6.2872 3.7145 19 1 7.1081 -7.2553 3.5993 20 6 8.5523 -6.0985 4.6785 21 7 9.1181 -4.9196 4.8191 22 14 9.0677 -7.5189 5.7769 23 1 10.1878 -8.2565 5.1394 24 1 9.5078 -6.9919 7.0936 25 1 7.9171 -8.4373 5.9709 26 8 2.0486 1.8098 1.3365 27 6 0.7770 2.2279 1.8367 28 1 -0.3633 0.5995 0.8348 29 1 -0.3633 0.4233 -0.9364 30 1 -0.3633 -1.0226 0.1017 31 1 1.4108 1.9701 -0.6221 32 1 3.8762 2.2261 -0.5582 33 1 3.4038 0.8455 -1.5772 34 1 6.0599 1.1932 -0.1702 35 1 5.5879 -0.1871 -1.1900 36 1 6.2245 -0.3714 1.7883 37 1 7.3687 -0.7693 0.4842 38 1 4.9922 -2.2354 0.0609 39 1 4.1801 -3.8665 -0.1616 40 1 3.2099 -6.1176 -0.3198 41 1 4.1159 -7.9572 1.0387 42 1 5.9960 -7.5610 2.5691 43 1 9.8032 -4.7878 5.4929 44 1 0.2455 2.7804 1.0618 45 1 0.1940 1.3528 2.1238 46 1 0.9215 2.8694 2.7060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789917228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:51 Heat of formation + Delta-G solvation = -156.629501 kcal Electronic energy + Delta-G solvation = -29496.388055 eV Core-core repulsion = 25160.393553 eV Total energy + Delta-G solvation = -4335.994502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.67301 -39.43835 -38.22126 -37.43368 -36.22326 -36.22114 -34.05490 -32.25232 -31.11280 -30.26877 -28.83010 -28.43060 -26.84581 -26.30028 -25.29296 -23.40859 -22.63132 -22.12053 -21.12558 -19.77457 -17.95937 -17.86220 -17.80479 -17.49099 -16.40892 -16.28507 -16.09868 -15.84540 -15.01580 -14.66867 -14.60575 -14.46810 -14.30506 -14.06752 -14.00273 -13.84229 -13.62516 -13.43115 -13.26045 -12.73193 -12.62433 -12.41623 -12.28991 -12.03489 -11.64272 -11.63861 -11.47889 -11.27662 -11.15741 -11.01615 -10.82000 -10.67788 -10.39363 -10.28721 -10.07525 -9.77514 -9.46695 -8.79851 -8.71062 -8.37835 -8.14724 -7.20428 -6.35825 -3.95740 1.83781 2.42589 3.17005 3.18478 3.22984 3.24202 3.40212 3.47458 3.86845 3.90707 4.00677 4.33729 4.69190 4.76081 4.77717 4.84801 4.94618 5.04504 5.07014 5.12643 5.12857 5.16494 5.19900 5.28404 5.32314 5.33680 5.49775 5.58059 5.67182 5.82236 5.90777 6.09239 6.23086 6.26020 6.67485 6.69702 6.73911 6.80194 7.02031 7.04384 7.15433 7.16981 7.33950 7.38535 7.80036 8.01360 8.30662 9.03837 9.25959 9.77818 10.78235 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.002585 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.637039 B =10827.591854 C =11568.417112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.378 6.378 3 C 0.246 3.754 4 C 0.079 3.921 5 O -0.359 6.359 6 C 0.049 3.951 7 C 0.129 3.871 8 N -0.737 5.737 9 C 0.554 3.446 10 O -0.505 6.505 11 C -0.224 4.224 12 C -0.036 4.036 13 C -0.231 4.231 14 C -0.052 4.052 15 C -0.240 4.240 16 C 0.190 3.810 17 O -0.125 6.125 18 C -0.403 4.403 19 H 0.093 0.907 20 C 0.044 3.956 21 N -0.834 5.834 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 O -0.378 6.378 27 C 0.021 3.979 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.395 0.605 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.270 0.730 44 H 0.040 0.960 45 H 0.051 0.949 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.280 12.714 -13.010 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.298 6.298 3 C 0.150 3.850 4 C 0.001 3.999 5 O -0.278 6.278 6 C -0.027 4.027 7 C 0.005 3.995 8 N -0.393 5.393 9 C 0.343 3.657 10 O -0.379 6.379 11 C -0.229 4.229 12 C -0.055 4.055 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.259 4.259 16 C 0.130 3.870 17 O -0.023 6.023 18 C -0.479 4.479 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.465 5.465 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 O -0.299 6.299 27 C -0.075 4.075 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.230 0.770 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.149 0.851 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.986 12.959 -11.940 23.132 hybrid contribution -0.722 -0.452 -0.168 0.868 sum -15.708 12.507 -12.108 23.447 Atomic orbital electron populations 1.23154 0.81358 1.03843 1.00053 1.88191 1.19412 1.28475 1.93679 1.23477 0.93867 0.83334 0.84288 1.22463 0.88278 0.94996 0.94130 1.88161 1.21360 1.66157 1.52102 1.22844 0.83003 0.99122 0.97782 1.21182 0.96332 0.81834 1.00183 1.45777 1.38253 1.08579 1.46739 1.18216 0.83168 0.84192 0.80103 1.90940 1.27261 1.83318 1.36421 1.18883 1.03848 0.92556 1.07592 1.20787 0.93258 0.96437 0.95003 1.20450 1.04732 0.93606 1.06232 1.20879 0.94433 0.97874 0.93863 1.21143 1.01734 0.97488 1.05534 1.19285 0.86621 0.91635 0.89416 1.84182 1.37909 1.38192 1.42029 1.21485 1.22067 0.90323 1.14062 0.88949 1.25376 0.95955 0.97977 0.97038 1.70135 1.23204 1.21571 1.31610 0.85738 0.79209 0.79625 0.78975 1.19814 1.20186 1.19110 1.88177 1.29730 1.80843 1.31104 1.23033 0.85920 0.99175 0.99411 0.93161 0.94045 0.89086 0.91593 0.91269 0.91215 0.91911 0.92712 0.90893 0.90334 0.76999 0.86948 0.87364 0.87288 0.85145 0.91949 0.94100 0.93067 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.69 101.05 1.08 1.17 16 2 O -0.38 -4.41 10.47 -63.57 -0.67 -5.07 16 3 C 0.25 2.44 3.18 37.16 0.12 2.55 16 4 C 0.08 0.74 6.03 37.16 0.22 0.97 16 5 O -0.36 -4.76 10.07 -55.74 -0.56 -5.32 16 6 C 0.05 0.56 6.07 37.16 0.23 0.78 16 7 C 0.13 2.00 6.06 -4.03 -0.02 1.98 16 8 N -0.74 -13.25 5.45 -61.34 -0.33 -13.59 16 9 C 0.55 13.06 7.76 -12.47 -0.10 12.96 16 10 O -0.50 -14.53 15.17 -16.57 -0.25 -14.78 16 11 C -0.22 -5.19 5.89 -104.81 -0.62 -5.80 16 12 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16 13 C -0.23 -4.05 10.02 -39.61 -0.40 -4.44 16 14 C -0.05 -0.97 10.03 -39.54 -0.40 -1.36 16 15 C -0.24 -5.39 9.16 -39.44 -0.36 -5.75 16 16 C 0.19 4.94 6.66 -38.60 -0.26 4.68 16 17 O -0.12 -3.82 7.84 -21.05 -0.16 -3.99 16 18 C -0.40 -11.79 9.49 30.90 0.29 -11.49 16 19 H 0.09 2.45 5.21 -52.48 -0.27 2.18 16 20 C 0.04 1.26 5.49 -17.51 -0.10 1.17 16 21 N -0.83 -25.84 13.67 55.48 0.76 -25.08 16 22 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 26 O -0.38 -4.49 10.50 -63.57 -0.67 -5.16 16 27 C 0.02 0.16 9.78 101.05 0.99 1.15 16 28 H 0.05 0.34 4.56 -51.93 -0.24 0.11 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.44 7.58 -51.93 -0.39 0.04 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.40 6.12 6.50 -40.82 -0.27 5.85 16 39 H 0.11 1.71 6.40 -52.48 -0.34 1.37 16 40 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 43 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.04 0.22 7.77 -51.93 -0.40 -0.18 16 45 H 0.05 0.40 6.08 -51.93 -0.32 0.09 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -39.00 387.34 -7.07 -46.07 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.31 Total: 7.47 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 0.31 Total: -2.48 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.42 Total: -38.66 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -2.31 Total: -34.32 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.00 -7.07 -46.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789917228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.558 kcal (2) G-P(sol) polarization free energy of solvation -39.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds