Wall clock time and date at job start Tue Mar 31 2020 22:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99981 * 2 1 4 4 C 1.53001 * 109.46897 * 202.74540 * 3 2 1 5 5 O 1.42901 * 109.47468 * 300.00253 * 4 3 2 6 6 C 1.42899 * 113.99776 * 180.02562 * 5 4 3 7 7 C 1.53009 * 109.46663 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46620 * 64.99946 * 7 6 5 9 9 C 1.34773 * 119.99708 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00153 * 0.02562 * 9 8 7 11 11 C 1.47542 * 119.99945 * 180.02562 * 9 8 7 12 12 C 1.39661 * 120.19825 * 0.02562 * 11 9 8 13 13 C 1.37826 * 119.91988 * 180.02562 * 12 11 9 14 14 C 1.38565 * 120.32230 * 0.02562 * 13 12 11 15 15 C 1.38024 * 120.40337 * 359.97438 * 14 13 12 16 16 C 1.38832 * 120.07248 * 359.95713 * 15 14 13 17 17 O 1.35517 * 120.15989 * 180.02562 * 16 15 14 18 18 C 1.34814 * 117.00281 * 354.66773 * 17 16 15 19 19 H 1.08004 * 119.99744 * 5.37233 * 18 17 16 20 20 C 1.38704 * 120.00173 * 185.36625 * 18 17 16 21 21 N 1.31520 * 120.00091 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00042 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46986 * 89.99850 * 22 20 18 24 24 H 1.48494 * 109.47056 * 210.00292 * 22 20 18 25 25 H 1.48495 * 109.47015 * 330.00292 * 22 20 18 26 26 O 1.42902 * 109.47114 * 82.74841 * 3 2 1 27 27 C 1.42891 * 113.99886 * 285.50431 * 26 3 2 28 28 H 1.09006 * 109.47036 * 305.68212 * 1 2 3 29 29 H 1.08999 * 109.47134 * 65.67371 * 1 2 3 30 30 H 1.08997 * 109.46960 * 185.67831 * 1 2 3 31 31 H 1.09001 * 109.47046 * 322.74332 * 3 2 1 32 32 H 1.08997 * 109.47103 * 179.97438 * 4 3 2 33 33 H 1.09006 * 109.47344 * 60.00020 * 4 3 2 34 34 H 1.08997 * 109.47238 * 60.00176 * 6 5 4 35 35 H 1.08996 * 109.47235 * 299.99482 * 6 5 4 36 36 H 1.08990 * 109.47525 * 305.00413 * 7 6 5 37 37 H 1.08999 * 109.47095 * 184.99509 * 7 6 5 38 38 H 0.97002 * 120.00310 * 0.02562 * 8 7 6 39 39 H 1.08004 * 120.03548 * 0.27202 * 12 11 9 40 40 H 1.08004 * 119.83542 * 179.97438 * 13 12 11 41 41 H 1.08008 * 119.79554 * 179.97438 * 14 13 12 42 42 H 1.08005 * 119.96256 * 179.97438 * 15 14 13 43 43 H 0.96995 * 120.00033 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.47437 * 317.46860 * 27 26 3 45 45 H 1.09004 * 109.46903 * 77.46645 * 27 26 3 46 46 H 1.09003 * 109.47540 * 197.46389 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4330 1.2303 -0.5577 5 8 4.2189 0.3589 0.2578 6 6 5.5724 0.2184 -0.1784 7 6 6.3158 -0.7310 0.7635 8 7 5.7349 -2.0722 0.6632 9 6 6.2331 -3.0797 1.4070 10 8 7.1643 -2.8753 2.1617 11 6 5.6485 -4.4305 1.3056 12 6 4.5791 -4.6700 0.4398 13 6 4.0371 -5.9340 0.3499 14 6 4.5475 -6.9701 1.1155 15 6 5.6040 -6.7484 1.9755 16 6 6.1636 -5.4820 2.0780 17 8 7.2013 -5.2624 2.9214 18 6 7.5729 -6.2872 3.7145 19 1 7.1081 -7.2553 3.5993 20 6 8.5523 -6.0985 4.6785 21 7 9.1181 -4.9196 4.8191 22 14 9.0677 -7.5189 5.7769 23 1 10.1878 -8.2565 5.1394 24 1 9.5078 -6.9919 7.0936 25 1 7.9171 -8.4373 5.9709 26 8 2.0486 1.8098 1.3365 27 6 0.7770 2.2279 1.8367 28 1 -0.3633 0.5995 0.8348 29 1 -0.3633 0.4233 -0.9364 30 1 -0.3633 -1.0226 0.1017 31 1 1.4108 1.9701 -0.6221 32 1 3.8762 2.2261 -0.5582 33 1 3.4038 0.8455 -1.5772 34 1 6.0599 1.1932 -0.1702 35 1 5.5879 -0.1871 -1.1900 36 1 6.2245 -0.3714 1.7883 37 1 7.3687 -0.7693 0.4842 38 1 4.9922 -2.2354 0.0609 39 1 4.1801 -3.8665 -0.1616 40 1 3.2099 -6.1176 -0.3198 41 1 4.1159 -7.9572 1.0387 42 1 5.9960 -7.5610 2.5691 43 1 9.8032 -4.7878 5.4929 44 1 0.2455 2.7804 1.0618 45 1 0.1940 1.3528 2.1238 46 1 0.9215 2.8694 2.7060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789917228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:50 Heat of formation + Delta-G solvation = -186.908775 kcal Electronic energy + Delta-G solvation = -29497.701063 eV Core-core repulsion = 25160.393553 eV Total energy + Delta-G solvation = -4337.307509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.25783 -40.35726 -39.82701 -38.57863 -38.00148 -36.93847 -35.62542 -34.30933 -32.53577 -31.29166 -30.55564 -29.60502 -27.53542 -27.32924 -26.89044 -24.91338 -23.58139 -23.31211 -22.75538 -21.49205 -19.83576 -19.26696 -18.59946 -18.48660 -17.87220 -17.33558 -17.16103 -16.93625 -16.38545 -16.25246 -16.03252 -15.80476 -15.67825 -15.32128 -15.28710 -15.22131 -15.06500 -14.47890 -14.33157 -14.20066 -14.01091 -13.79080 -13.53672 -13.31214 -13.06001 -12.95329 -12.68461 -12.51125 -12.39374 -12.26316 -12.23116 -12.11156 -12.06875 -11.41393 -10.94733 -10.82057 -10.73819 -10.66923 -10.49542 -10.07492 -9.75541 -9.02018 -8.42905 -6.14181 0.14489 0.74194 1.32676 1.44864 1.52397 2.11952 2.17247 2.33578 2.61048 2.66075 2.85835 2.89501 3.24301 3.48752 3.76338 3.84748 4.02668 4.09570 4.18097 4.22988 4.26391 4.30581 4.32879 4.46257 4.47010 4.50433 4.52788 4.53541 4.56056 4.63647 4.69203 4.77184 4.89831 4.94674 5.01035 5.08932 5.15665 5.50333 5.57735 5.62511 5.70432 5.97900 6.04148 6.10775 6.18496 6.33280 6.72902 6.95989 7.51371 7.82637 8.77951 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.002585 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.637039 B =10827.591854 C =11568.417112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.410 6.410 3 C 0.236 3.764 4 C 0.070 3.930 5 O -0.395 6.395 6 C 0.062 3.938 7 C 0.122 3.878 8 N -0.712 5.712 9 C 0.545 3.455 10 O -0.572 6.572 11 C -0.245 4.245 12 C -0.029 4.029 13 C -0.200 4.200 14 C -0.039 4.039 15 C -0.258 4.258 16 C 0.149 3.851 17 O -0.189 6.189 18 C -0.428 4.428 19 H 0.107 0.893 20 C -0.024 4.024 21 N -0.906 5.906 22 Si 1.024 2.976 23 H -0.260 1.260 24 H -0.273 1.273 25 H -0.248 1.248 26 O -0.414 6.414 27 C 0.015 3.985 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.411 0.589 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.125 0.875 43 H 0.271 0.729 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.993 11.981 -16.283 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.331 6.331 3 C 0.142 3.858 4 C -0.006 4.006 5 O -0.315 6.315 6 C -0.014 4.014 7 C -0.002 4.002 8 N -0.367 5.367 9 C 0.335 3.665 10 O -0.451 6.451 11 C -0.250 4.250 12 C -0.048 4.048 13 C -0.219 4.219 14 C -0.057 4.057 15 C -0.277 4.277 16 C 0.094 3.906 17 O -0.092 6.092 18 C -0.504 4.504 19 H 0.125 0.875 20 C -0.223 4.223 21 N -0.542 5.542 22 Si 0.842 3.158 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.171 1.171 26 O -0.335 6.335 27 C -0.081 4.081 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.173 0.827 42 H 0.143 0.857 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.807 12.237 -15.312 27.165 hybrid contribution 0.026 -0.146 0.504 0.525 sum -18.782 12.091 -14.808 26.800 Atomic orbital electron populations 1.23322 0.79870 1.04250 1.01579 1.88127 1.21293 1.29811 1.93866 1.23842 0.94610 0.83360 0.84032 1.22801 0.87745 0.95430 0.94646 1.88102 1.22050 1.67440 1.53879 1.22753 0.82434 0.99100 0.97143 1.21356 0.97327 0.81433 1.00055 1.45586 1.37677 1.08411 1.45051 1.18575 0.82536 0.85568 0.79815 1.90915 1.30339 1.84414 1.39481 1.19318 1.05300 0.91928 1.08449 1.21264 0.91193 0.98662 0.93662 1.21158 1.04177 0.92071 1.04464 1.21430 0.92207 1.00534 0.91573 1.21305 1.03313 0.95992 1.07063 1.20073 0.86887 0.94056 0.89573 1.84185 1.41014 1.39346 1.44640 1.22061 1.22719 0.90983 1.14667 0.87546 1.26801 0.95657 1.01277 0.98537 1.70335 1.25316 1.24868 1.33701 0.84541 0.79374 0.75592 0.76290 1.18510 1.19757 1.17108 1.88128 1.31713 1.81182 1.32519 1.23187 0.85006 0.99377 1.00486 0.92613 0.91695 0.89163 0.88140 0.89448 0.88834 0.89308 0.89973 0.93897 0.90465 0.75163 0.82885 0.81866 0.82650 0.85745 0.92039 0.91348 0.93474 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 10.69 113.37 1.21 1.28 16 2 O -0.41 -8.68 10.47 -121.88 -1.28 -9.95 16 3 C 0.24 4.10 3.18 71.98 0.23 4.33 16 4 C 0.07 1.12 6.03 71.98 0.43 1.56 16 5 O -0.40 -9.79 10.07 -129.37 -1.30 -11.10 16 6 C 0.06 1.28 6.07 71.99 0.44 1.72 16 7 C 0.12 3.89 6.06 86.38 0.52 4.41 16 8 N -0.71 -25.72 5.45 -466.25 -2.54 -28.26 16 9 C 0.55 26.95 7.76 86.70 0.67 27.62 16 10 O -0.57 -35.81 15.17 16.89 0.26 -35.55 16 11 C -0.25 -11.51 5.89 -19.99 -0.12 -11.63 16 12 C -0.03 -0.99 9.53 22.52 0.21 -0.77 16 13 C -0.20 -5.85 10.02 22.25 0.22 -5.62 16 14 C -0.04 -1.30 10.03 22.30 0.22 -1.07 16 15 C -0.26 -11.53 9.16 22.36 0.20 -11.32 16 16 C 0.15 8.10 6.66 22.91 0.15 8.26 16 17 O -0.19 -12.54 7.84 0.87 0.01 -12.53 16 18 C -0.43 -26.78 9.49 67.93 0.64 -26.13 16 19 H 0.11 5.95 5.21 -2.91 -0.02 5.94 16 20 C -0.02 -1.45 5.49 84.85 0.47 -0.99 16 21 N -0.91 -60.98 13.67 21.62 0.30 -60.68 16 22 Si 1.02 45.49 29.55 68.60 2.03 47.52 16 23 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 26 O -0.41 -9.35 10.50 -121.88 -1.28 -10.63 16 27 C 0.01 0.22 9.78 113.37 1.11 1.33 16 28 H 0.06 0.65 4.56 -2.38 -0.01 0.64 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 0.96 7.58 -2.39 -0.02 0.95 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.41 11.90 6.50 -92.71 -0.60 11.30 16 39 H 0.15 3.87 6.40 -2.91 -0.02 3.85 16 40 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 41 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 42 H 0.12 5.59 5.64 -2.91 -0.02 5.58 16 43 H 0.27 16.63 8.31 -92.71 -0.77 15.86 16 44 H 0.07 0.57 7.77 -2.38 -0.02 0.55 16 45 H 0.05 0.70 6.08 -2.39 -0.01 0.68 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -98.26 387.34 3.23 -95.04 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.41 Total: 33.20 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 6.63 Total: -7.05 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -2.25 Total: -88.94 kcal Atomic # 8 Polarization: -76.16 SS G_CDS: -3.60 Total: -79.76 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -98.26 3.23 -95.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789917228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.873 kcal (2) G-P(sol) polarization free energy of solvation -98.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds