Wall clock time and date at job start Tue Mar 31 2020 22:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 111.00143 * 2 1 4 4 C 1.50705 * 109.47086 * 293.95515 * 3 2 1 5 5 O 1.21279 * 120.00042 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00183 * 179.97438 * 4 3 2 7 7 C 1.47023 * 125.64649 * 359.69577 * 6 4 3 8 8 C 1.54307 * 107.27703 * 180.96535 * 7 6 4 9 9 C 1.55160 * 102.86565 * 22.52476 * 8 7 6 10 10 C 1.47422 * 125.64950 * 179.97438 * 6 4 3 11 11 C 1.46894 * 111.00081 * 123.95601 * 2 1 3 12 12 N 1.46497 * 109.47320 * 66.04164 * 11 2 1 13 13 N 1.40170 * 126.15026 * 270.17605 * 12 11 2 14 14 C 1.32233 * 107.75621 * 180.26552 * 13 12 11 15 15 C 1.40123 * 125.92269 * 179.74974 * 14 13 12 16 16 H 1.07999 * 120.00190 * 174.26236 * 15 14 13 17 17 C 1.40035 * 120.00095 * 354.26700 * 15 14 13 18 18 N 1.30796 * 119.99905 * 6.05058 * 17 15 14 19 19 Si 1.86804 * 120.00270 * 186.05690 * 17 15 14 20 20 H 1.48499 * 109.47173 * 94.97565 * 19 17 15 21 21 H 1.48501 * 109.47017 * 214.97886 * 19 17 15 22 22 H 1.48498 * 109.46538 * 334.97836 * 19 17 15 23 23 N 1.38499 * 108.15476 * 359.74953 * 14 13 12 24 24 C 1.46496 * 125.83724 * 179.97438 * 23 14 13 25 25 C 1.34736 * 108.32445 * 359.97438 * 23 14 13 26 26 S 1.71195 * 125.96927 * 180.02562 * 25 23 14 27 27 H 1.09007 * 109.46599 * 296.04447 * 1 2 3 28 28 H 1.08994 * 109.46865 * 56.04217 * 1 2 3 29 29 H 1.08996 * 109.46879 * 176.04823 * 1 2 3 30 30 H 1.09006 * 109.47053 * 53.95437 * 3 2 1 31 31 H 1.08998 * 109.47260 * 173.95485 * 3 2 1 32 32 H 1.09000 * 109.88306 * 300.51264 * 7 6 4 33 33 H 1.09006 * 109.88095 * 61.67232 * 7 6 4 34 34 H 1.09004 * 110.92540 * 264.11521 * 8 7 6 35 35 H 1.08999 * 110.59289 * 140.78681 * 8 7 6 36 36 H 1.08994 * 111.00869 * 206.23290 * 9 8 7 37 37 H 1.09003 * 111.00078 * 82.37666 * 9 8 7 38 38 H 1.09000 * 110.36468 * 274.67718 * 10 6 4 39 39 H 1.08997 * 110.36685 * 36.89208 * 10 6 4 40 40 H 1.09001 * 109.47217 * 306.04382 * 11 2 1 41 41 H 1.09002 * 109.47178 * 186.04329 * 11 2 1 42 42 H 0.97005 * 120.00107 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.47527 * 270.01613 * 24 23 14 44 44 H 1.08998 * 109.47280 * 30.02090 * 24 23 14 45 45 H 1.09007 * 109.46963 * 150.01850 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0047 1.4457 -2.1407 6 7 2.0181 3.3202 -1.5234 7 6 2.7782 4.1646 -0.5902 8 6 2.9602 5.5415 -1.2625 9 6 1.8002 5.5793 -2.2922 10 6 1.7368 4.0985 -2.7434 11 6 1.9955 -0.7660 1.1375 12 7 1.6469 -2.1798 0.9774 13 7 0.4830 -2.8029 1.4482 14 6 0.5437 -4.0796 1.1093 15 6 -0.4224 -5.0532 1.3962 16 1 -0.3205 -6.0502 0.9936 17 6 -1.5200 -4.7335 2.2048 18 7 -1.7074 -3.4992 2.5950 19 14 -2.7166 -6.0698 2.7266 20 1 -2.3306 -6.5849 4.0649 21 1 -4.0896 -5.5077 2.7896 22 1 -2.6805 -7.1791 1.7400 23 7 1.7277 -4.2877 0.4215 24 6 2.1856 -5.5649 -0.1310 25 6 2.3863 -3.1146 0.3474 26 16 3.9010 -2.8578 -0.4080 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 1.5612 1.9273 0.8310 31 1 3.0798 1.3444 0.1082 32 1 2.2261 4.2757 0.3430 33 1 3.7530 3.7174 -0.3956 34 1 3.9250 5.6044 -1.7660 35 1 2.8528 6.3425 -0.5310 36 1 2.0427 6.2328 -3.1302 37 1 0.8670 5.8840 -1.8184 38 1 2.4933 3.9003 -3.5026 39 1 0.7446 3.8589 -3.1259 40 1 1.5612 -0.3873 2.0627 41 1 3.0798 -0.6611 1.1755 42 1 -2.4676 -3.2778 3.1555 43 1 2.7759 -6.0937 0.6172 44 1 1.3232 -6.1710 -0.4082 45 1 2.7986 -5.3802 -1.0133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794617482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:35 Heat of formation + Delta-G solvation = 65.694281 kcal Electronic energy + Delta-G solvation = -27579.051553 eV Core-core repulsion = 23760.036107 eV Total energy + Delta-G solvation = -3819.015446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83591 -40.09758 -37.85037 -36.45729 -34.16476 -33.70526 -31.96536 -30.74674 -29.49040 -28.29155 -27.61268 -26.53502 -25.53810 -23.80254 -22.50480 -21.45938 -21.02288 -20.79991 -19.25267 -17.77136 -17.30064 -16.81667 -16.51882 -15.72331 -15.68961 -15.54218 -15.10685 -14.76019 -14.55365 -14.48762 -13.93893 -13.71682 -13.54031 -13.48625 -13.00536 -12.78719 -12.44107 -12.21694 -12.17413 -11.85159 -11.79715 -11.68506 -11.55593 -11.51623 -11.31585 -11.21569 -11.07601 -11.02026 -10.58276 -10.47855 -10.06275 -9.67426 -9.50851 -9.21033 -8.86555 -8.72070 -8.06710 -7.04977 -6.70887 -6.59506 -5.12863 2.32582 2.65123 2.72924 2.77803 2.85377 2.91652 2.95636 3.43948 3.53989 3.65809 4.07412 4.18931 4.27091 4.36370 4.57194 4.76701 4.84565 4.95545 5.07300 5.16798 5.22898 5.29359 5.38015 5.40030 5.52189 5.53204 5.59669 5.61864 5.67446 5.83112 5.89848 5.95007 6.01369 6.14026 6.20913 6.29018 6.59879 6.69513 6.81685 7.03591 7.09156 7.19652 7.45110 7.63353 7.80591 8.25713 8.28101 8.36600 9.16997 9.92718 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.002918 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.940612 B = 9591.847842 C =10778.639010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.532 5.532 3 C 0.052 3.948 4 C 0.533 3.467 5 O -0.511 6.511 6 N -0.627 5.627 7 C 0.098 3.902 8 C -0.132 4.132 9 C -0.134 4.134 10 C 0.106 3.894 11 C 0.330 3.670 12 N -0.378 5.378 13 N -0.344 5.344 14 C 0.376 3.624 15 C -0.437 4.437 16 H 0.098 0.902 17 C 0.077 3.923 18 N -0.738 5.738 19 Si 0.928 3.072 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.259 1.259 23 N -0.517 5.517 24 C 0.101 3.899 25 C 0.483 3.517 26 S -0.705 6.705 27 H 0.020 0.980 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.284 0.716 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 13.944 -0.859 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.258 5.258 3 C -0.080 4.080 4 C 0.321 3.679 5 O -0.385 6.385 6 N -0.365 5.365 7 C -0.025 4.025 8 C -0.169 4.169 9 C -0.172 4.172 10 C -0.016 4.016 11 C 0.118 3.882 12 N -0.164 5.164 13 N -0.175 5.175 14 C 0.127 3.873 15 C -0.479 4.479 16 H 0.115 0.885 17 C -0.149 4.149 18 N -0.362 5.362 19 Si 0.752 3.248 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.183 1.183 23 N -0.218 5.218 24 C -0.042 4.042 25 C 0.114 3.886 26 S -0.581 6.581 27 H 0.039 0.961 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.067 14.389 -1.548 14.619 hybrid contribution -1.141 -0.809 1.041 1.744 sum 0.926 13.579 -0.506 13.620 Atomic orbital electron populations 1.22522 0.85310 1.04366 0.99884 1.61418 1.09801 1.10920 1.43706 1.21749 1.02267 0.89510 0.94494 1.20223 0.79000 0.79457 0.89178 1.90715 1.38623 1.62647 1.46503 1.48537 1.56887 1.12398 1.18700 1.22055 0.96389 0.90979 0.93124 1.22630 0.99377 0.96159 0.98777 1.22797 0.99119 0.95868 0.99429 1.22180 1.01953 0.89778 0.87718 1.21626 1.00060 0.75206 0.91268 1.49013 1.16772 1.07496 1.43133 1.79330 1.01144 1.03697 1.33341 1.21272 0.84582 0.92556 0.88931 1.18357 1.03638 0.96486 1.29401 0.88453 1.25832 0.97938 0.96726 0.94434 1.69884 1.25269 1.18228 1.22837 0.85952 0.78733 0.80331 0.79831 1.19185 1.19820 1.18252 1.45977 1.18478 1.08632 1.48734 1.21746 1.00792 0.81826 0.99860 1.22856 0.93221 0.83465 0.89050 1.92679 1.08933 1.92306 1.64176 0.96110 0.90478 0.89892 0.91970 0.87499 0.91347 0.91079 0.90377 0.89994 0.89838 0.90627 0.91520 0.90470 0.91651 0.87256 0.90447 0.91499 0.89851 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.07 60.07 0.54 1.07 16 2 N -0.53 -10.16 4.64 -248.30 -1.15 -11.31 16 3 C 0.05 0.74 4.64 -4.97 -0.02 0.72 16 4 C 0.53 8.34 7.54 -10.98 -0.08 8.26 16 5 O -0.51 -10.32 14.58 5.56 0.08 -10.24 16 6 N -0.63 -7.37 3.33 -170.51 -0.57 -7.93 16 7 C 0.10 0.76 6.48 -3.07 -0.02 0.74 16 8 C -0.13 -0.75 6.95 -24.90 -0.17 -0.92 16 9 C -0.13 -0.87 7.08 -24.57 -0.17 -1.04 16 10 C 0.11 1.07 6.91 -2.52 -0.02 1.05 16 11 C 0.33 6.46 5.91 -63.33 -0.37 6.08 16 12 N -0.38 -8.97 3.34 -65.05 -0.22 -9.19 16 13 N -0.34 -8.79 9.82 31.21 0.31 -8.48 16 14 C 0.38 9.40 7.49 -155.28 -1.16 8.23 16 15 C -0.44 -10.29 8.99 -38.20 -0.34 -10.63 16 16 H 0.10 2.07 7.08 -52.49 -0.37 1.70 16 17 C 0.08 1.75 5.49 -17.32 -0.10 1.65 16 18 N -0.74 -17.76 11.93 55.55 0.66 -17.10 16 19 Si 0.93 16.73 29.57 -169.99 -5.03 11.71 16 20 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 21 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 23 N -0.52 -12.10 3.17 -124.66 -0.39 -12.50 16 24 C 0.10 1.87 10.66 59.84 0.64 2.51 16 25 C 0.48 11.91 7.84 -86.92 -0.68 11.22 16 26 S -0.71 -17.99 29.50 -107.50 -3.17 -21.16 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 1.54 5.82 -51.93 -0.30 1.24 16 29 H 0.08 1.96 6.84 -51.93 -0.36 1.61 16 30 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 31 H 0.11 1.36 7.93 -51.93 -0.41 0.95 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.87 8.03 -51.93 -0.42 0.46 16 40 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 41 H 0.11 2.05 7.44 -51.93 -0.39 1.66 16 42 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.08 1.37 7.27 -51.93 -0.38 0.99 16 45 H 0.09 1.67 7.61 -51.93 -0.40 1.27 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -34.21 382.09 -12.48 -46.69 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.80 Total: 4.78 kcal Atomic # 6 Polarization: 30.93 SS G_CDS: -1.97 Total: 28.96 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -1.36 Total: -66.51 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.71 kcal Atomic # 16 Polarization: -17.99 SS G_CDS: -3.17 Total: -21.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.21 -12.48 -46.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794617482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.389 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds