Wall clock time and date at job start Tue Mar 31 2020 22:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 111.00143 * 2 1 4 4 C 1.50705 * 109.47086 * 293.95515 * 3 2 1 5 5 O 1.21279 * 120.00042 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00183 * 179.97438 * 4 3 2 7 7 C 1.47023 * 125.64649 * 359.69577 * 6 4 3 8 8 C 1.54307 * 107.27703 * 180.96535 * 7 6 4 9 9 C 1.55160 * 102.86565 * 22.52476 * 8 7 6 10 10 C 1.47422 * 125.64950 * 179.97438 * 6 4 3 11 11 C 1.46894 * 111.00081 * 123.95601 * 2 1 3 12 12 N 1.46497 * 109.47320 * 66.04164 * 11 2 1 13 13 N 1.40170 * 126.15026 * 270.17605 * 12 11 2 14 14 C 1.32233 * 107.75621 * 180.26552 * 13 12 11 15 15 C 1.40123 * 125.92269 * 179.74974 * 14 13 12 16 16 H 1.07999 * 120.00190 * 174.26236 * 15 14 13 17 17 C 1.40035 * 120.00095 * 354.26700 * 15 14 13 18 18 N 1.30796 * 119.99905 * 6.05058 * 17 15 14 19 19 Si 1.86804 * 120.00270 * 186.05690 * 17 15 14 20 20 H 1.48499 * 109.47173 * 94.97565 * 19 17 15 21 21 H 1.48501 * 109.47017 * 214.97886 * 19 17 15 22 22 H 1.48498 * 109.46538 * 334.97836 * 19 17 15 23 23 N 1.38499 * 108.15476 * 359.74953 * 14 13 12 24 24 C 1.46496 * 125.83724 * 179.97438 * 23 14 13 25 25 C 1.34736 * 108.32445 * 359.97438 * 23 14 13 26 26 S 1.71195 * 125.96927 * 180.02562 * 25 23 14 27 27 H 1.09007 * 109.46599 * 296.04447 * 1 2 3 28 28 H 1.08994 * 109.46865 * 56.04217 * 1 2 3 29 29 H 1.08996 * 109.46879 * 176.04823 * 1 2 3 30 30 H 1.09006 * 109.47053 * 53.95437 * 3 2 1 31 31 H 1.08998 * 109.47260 * 173.95485 * 3 2 1 32 32 H 1.09000 * 109.88306 * 300.51264 * 7 6 4 33 33 H 1.09006 * 109.88095 * 61.67232 * 7 6 4 34 34 H 1.09004 * 110.92540 * 264.11521 * 8 7 6 35 35 H 1.08999 * 110.59289 * 140.78681 * 8 7 6 36 36 H 1.08994 * 111.00869 * 206.23290 * 9 8 7 37 37 H 1.09003 * 111.00078 * 82.37666 * 9 8 7 38 38 H 1.09000 * 110.36468 * 274.67718 * 10 6 4 39 39 H 1.08997 * 110.36685 * 36.89208 * 10 6 4 40 40 H 1.09001 * 109.47217 * 306.04382 * 11 2 1 41 41 H 1.09002 * 109.47178 * 186.04329 * 11 2 1 42 42 H 0.97005 * 120.00107 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.47527 * 270.01613 * 24 23 14 44 44 H 1.08998 * 109.47280 * 30.02090 * 24 23 14 45 45 H 1.09007 * 109.46963 * 150.01850 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0047 1.4457 -2.1407 6 7 2.0181 3.3202 -1.5234 7 6 2.7782 4.1646 -0.5902 8 6 2.9602 5.5415 -1.2625 9 6 1.8002 5.5793 -2.2922 10 6 1.7368 4.0985 -2.7434 11 6 1.9955 -0.7660 1.1375 12 7 1.6469 -2.1798 0.9774 13 7 0.4830 -2.8029 1.4482 14 6 0.5437 -4.0796 1.1093 15 6 -0.4224 -5.0532 1.3962 16 1 -0.3205 -6.0502 0.9936 17 6 -1.5200 -4.7335 2.2048 18 7 -1.7074 -3.4992 2.5950 19 14 -2.7166 -6.0698 2.7266 20 1 -2.3306 -6.5849 4.0649 21 1 -4.0896 -5.5077 2.7896 22 1 -2.6805 -7.1791 1.7400 23 7 1.7277 -4.2877 0.4215 24 6 2.1856 -5.5649 -0.1310 25 6 2.3863 -3.1146 0.3474 26 16 3.9010 -2.8578 -0.4080 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 1.5612 1.9273 0.8310 31 1 3.0798 1.3444 0.1082 32 1 2.2261 4.2757 0.3430 33 1 3.7530 3.7174 -0.3956 34 1 3.9250 5.6044 -1.7660 35 1 2.8528 6.3425 -0.5310 36 1 2.0427 6.2328 -3.1302 37 1 0.8670 5.8840 -1.8184 38 1 2.4933 3.9003 -3.5026 39 1 0.7446 3.8589 -3.1259 40 1 1.5612 -0.3873 2.0627 41 1 3.0798 -0.6611 1.1755 42 1 -2.4676 -3.2778 3.1555 43 1 2.7759 -6.0937 0.6172 44 1 1.3232 -6.1710 -0.4082 45 1 2.7986 -5.3802 -1.0133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794617482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:34 Heat of formation + Delta-G solvation = 44.569822 kcal Electronic energy + Delta-G solvation = -27579.967578 eV Core-core repulsion = 23760.036107 eV Total energy + Delta-G solvation = -3819.931471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.63765 -41.17761 -38.93334 -37.82219 -35.89556 -35.39938 -32.88813 -32.48558 -30.33480 -29.72582 -28.96753 -28.24975 -27.12482 -24.98234 -23.84853 -22.76891 -22.58799 -21.96918 -20.26248 -19.49126 -18.67780 -18.08336 -17.69766 -17.42266 -17.22486 -16.88593 -16.58229 -16.21153 -15.96359 -15.91250 -15.22308 -15.08011 -14.49887 -14.34688 -14.24483 -13.90313 -13.75709 -13.67632 -13.46039 -13.34500 -13.19601 -13.05717 -12.85689 -12.72787 -12.64371 -12.43359 -12.17469 -12.12731 -11.98829 -11.74612 -11.58149 -11.38735 -10.98083 -10.91427 -10.66593 -9.69042 -9.49537 -8.81990 -8.65781 -8.54865 -6.96910 0.50416 0.83614 1.27176 1.44254 1.55553 1.60014 1.60935 1.84718 1.90840 2.13048 2.43029 2.85854 3.08257 3.40740 3.59534 3.69662 3.85626 3.98796 4.04317 4.05937 4.16009 4.19614 4.32245 4.36134 4.45456 4.47287 4.50214 4.57227 4.67569 4.70010 4.86641 4.91075 4.95559 5.00265 5.01832 5.09627 5.12790 5.27717 5.28766 5.39914 5.59419 5.68556 5.92617 6.07994 6.45770 6.48216 6.56805 7.14252 7.32029 8.23835 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.002918 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.940612 B = 9591.847842 C =10778.639010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.554 5.554 3 C 0.054 3.946 4 C 0.526 3.474 5 O -0.572 6.572 6 N -0.623 5.623 7 C 0.086 3.914 8 C -0.123 4.123 9 C -0.123 4.123 10 C 0.095 3.905 11 C 0.327 3.673 12 N -0.375 5.375 13 N -0.368 5.368 14 C 0.352 3.648 15 C -0.451 4.451 16 H 0.117 0.883 17 C 0.036 3.964 18 N -0.774 5.774 19 Si 1.006 2.994 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.247 1.247 23 N -0.518 5.518 24 C 0.095 3.905 25 C 0.468 3.532 26 S -0.737 6.737 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.292 0.708 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 14.727 0.352 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.280 5.280 3 C -0.076 4.076 4 C 0.315 3.685 5 O -0.451 6.451 6 N -0.358 5.358 7 C -0.036 4.036 8 C -0.161 4.161 9 C -0.161 4.161 10 C -0.027 4.027 11 C 0.116 3.884 12 N -0.161 5.161 13 N -0.201 5.201 14 C 0.104 3.896 15 C -0.492 4.492 16 H 0.135 0.865 17 C -0.187 4.187 18 N -0.398 5.398 19 Si 0.825 3.175 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.170 1.170 23 N -0.219 5.219 24 C -0.046 4.046 25 C 0.097 3.903 26 S -0.613 6.613 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.123 0.877 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.066 15.238 -0.333 15.381 hybrid contribution -1.133 -0.957 0.663 1.624 sum 0.933 14.281 0.330 14.316 Atomic orbital electron populations 1.22187 0.86221 1.01393 1.00193 1.61284 1.09154 1.13804 1.43738 1.21876 1.03348 0.87275 0.95118 1.20452 0.78604 0.80504 0.88968 1.90685 1.41642 1.64471 1.48267 1.48631 1.55747 1.11548 1.19917 1.22425 0.96472 0.91561 0.93112 1.22661 0.99250 0.95325 0.98823 1.22775 0.99827 0.93077 1.00407 1.22374 1.00707 0.92198 0.87419 1.21861 1.00583 0.73804 0.92108 1.49405 1.15935 1.08691 1.42070 1.79255 1.02006 1.04510 1.34286 1.21704 0.85433 0.92945 0.89540 1.18900 1.03666 0.97089 1.29571 0.86472 1.26875 0.99224 0.98914 0.93706 1.69970 1.26178 1.20426 1.23250 0.84801 0.75871 0.77266 0.79543 1.18673 1.19667 1.17044 1.46260 1.17898 1.09491 1.48264 1.22023 1.01945 0.80515 1.00114 1.22852 0.93306 0.84357 0.89802 1.92587 1.10235 1.92697 1.65783 0.94800 0.91091 0.94221 0.88581 0.85584 0.89792 0.90129 0.89557 0.87618 0.87836 0.90377 0.91709 0.92613 0.90151 0.86460 0.89772 0.89695 0.87657 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.97 9.07 127.69 1.16 3.13 16 2 N -0.55 -21.37 4.64 -939.49 -4.36 -25.72 16 3 C 0.05 1.51 4.64 85.56 0.40 1.91 16 4 C 0.53 16.56 7.54 87.66 0.66 17.23 16 5 O -0.57 -24.18 14.58 -3.03 -0.04 -24.23 16 6 N -0.62 -14.12 3.33 -811.77 -2.70 -16.82 16 7 C 0.09 1.11 6.48 86.72 0.56 1.68 16 8 C -0.12 -0.98 6.95 31.78 0.22 -0.76 16 9 C -0.12 -1.30 7.08 32.00 0.23 -1.08 16 10 C 0.10 1.89 6.91 86.86 0.60 2.49 16 11 C 0.33 12.83 5.91 170.81 1.01 13.84 16 12 N -0.38 -18.11 3.34 -359.73 -1.20 -19.31 16 13 N -0.37 -19.20 9.82 -55.17 -0.54 -19.75 16 14 C 0.35 17.78 7.49 133.53 1.00 18.78 16 15 C -0.45 -20.96 8.99 23.16 0.21 -20.75 16 16 H 0.12 4.79 7.08 -2.91 -0.02 4.77 16 17 C 0.04 1.60 5.49 85.28 0.47 2.07 16 18 N -0.77 -37.35 11.93 21.84 0.26 -37.09 16 19 Si 1.01 33.04 29.57 68.60 2.03 35.06 16 20 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16 21 H -0.27 -8.80 7.11 99.48 0.71 -8.09 16 22 H -0.25 -7.62 7.11 99.48 0.71 -6.91 16 23 N -0.52 -24.44 3.17 -548.31 -1.74 -26.18 16 24 C 0.10 3.49 10.66 127.77 1.36 4.85 16 25 C 0.47 23.44 7.84 179.06 1.40 24.84 16 26 S -0.74 -38.01 29.50 -56.49 -1.67 -39.68 16 27 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.07 2.98 5.82 -2.39 -0.01 2.97 16 29 H 0.04 1.95 6.84 -2.39 -0.02 1.94 16 30 H 0.10 2.04 8.12 -2.38 -0.02 2.02 16 31 H 0.13 3.01 7.93 -2.39 -0.02 2.99 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.33 8.03 -2.39 -0.02 1.31 16 40 H 0.08 2.87 8.12 -2.39 -0.02 2.85 16 41 H 0.12 4.37 7.44 -2.39 -0.02 4.35 16 42 H 0.29 12.70 8.30 -92.70 -0.77 11.93 16 43 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.10 3.32 7.27 -2.39 -0.02 3.30 16 45 H 0.09 3.21 7.61 -2.38 -0.02 3.19 16 Total: -1.00 -77.35 382.09 0.31 -77.04 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: 1.00 Total: 28.46 kcal Atomic # 6 Polarization: 58.93 SS G_CDS: 9.28 Total: 68.21 kcal Atomic # 7 Polarization: -134.59 SS G_CDS: -10.28 Total: -144.87 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.04 Total: -24.23 kcal Atomic # 14 Polarization: 33.04 SS G_CDS: 2.03 Total: 35.06 kcal Atomic # 16 Polarization: -38.01 SS G_CDS: -1.67 Total: -39.68 kcal Total: -77.35 0.31 -77.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794617482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.609 kcal (2) G-P(sol) polarization free energy of solvation -77.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds