Wall clock time and date at job start Tue Mar 31 2020 22:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48504 * 109.47280 * 274.66494 * 3 2 1 5 5 H 1.48500 * 109.47199 * 34.66408 * 3 2 1 6 6 H 1.48500 * 109.47272 * 154.66362 * 3 2 1 7 7 C 1.40224 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99956 * 162.20329 * 7 2 1 9 9 C 1.41112 * 119.99909 * 342.20859 * 7 2 1 10 10 C 1.40889 * 120.10388 * 155.06138 * 9 7 2 11 11 C 1.36314 * 119.89202 * 180.02562 * 10 9 7 12 12 C 1.40011 * 120.10770 * 0.02562 * 11 10 9 13 13 C 1.47636 * 119.89893 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99930 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00507 * 179.97438 * 13 12 11 16 16 C 1.46490 * 120.00287 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.47210 * 35.00276 * 16 15 13 18 18 C 1.52999 * 109.47133 * 275.00189 * 16 15 13 19 19 C 1.52995 * 109.47304 * 65.00172 * 18 16 15 20 20 O 1.42899 * 109.47461 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.47170 * 155.00076 * 16 15 13 22 22 C 1.50697 * 109.46839 * 295.00027 * 21 16 15 23 23 C 1.38234 * 120.00136 * 90.00441 * 22 21 16 24 24 C 1.38235 * 120.00250 * 179.97438 * 23 22 21 25 25 C 1.38232 * 119.99815 * 359.97055 * 24 23 22 26 26 C 1.38234 * 119.99815 * 0.28450 * 25 24 23 27 27 C 1.38228 * 120.00220 * 359.50389 * 26 25 24 28 28 C 1.40015 * 120.20655 * 0.24909 * 12 11 10 29 29 C 1.36314 * 120.10917 * 359.49073 * 28 12 11 30 30 H 0.97003 * 120.00107 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.05040 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.94353 * 179.97438 * 11 10 9 33 33 H 0.97003 * 119.99141 * 0.02562 * 15 13 12 34 34 H 1.09008 * 109.47120 * 185.00075 * 18 16 15 35 35 H 1.08998 * 109.47109 * 304.99637 * 18 16 15 36 36 H 1.09008 * 109.46953 * 300.00005 * 19 18 16 37 37 H 1.08998 * 109.47474 * 59.99689 * 19 18 16 38 38 H 0.96702 * 114.00158 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.46945 * 175.00405 * 21 16 15 40 40 H 1.08992 * 109.46986 * 54.99940 * 21 16 15 41 41 H 1.08003 * 119.99803 * 359.96682 * 23 22 21 42 42 H 1.07999 * 119.99954 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.99773 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.99766 * 179.72621 * 26 25 24 45 45 H 1.08008 * 119.99940 * 180.27590 * 27 26 25 46 46 H 1.08002 * 119.94485 * 179.74905 * 28 12 11 47 47 H 1.07997 * 120.05729 * 180.22914 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3893 2.1034 -1.3955 5 1 1.4907 2.6222 0.7963 6 1 3.5838 1.4138 0.5991 7 6 2.0076 -1.2143 -0.0005 8 1 3.0489 -1.2365 -0.2864 9 6 1.3527 -2.4074 0.3723 10 6 1.8230 -3.6488 -0.0994 11 6 1.1867 -4.7986 0.2631 12 6 0.0672 -4.7471 1.1024 13 6 -0.6187 -5.9952 1.4916 14 8 -0.2115 -7.0655 1.0830 15 7 -1.6962 -5.9482 2.2998 16 6 -2.3771 -7.1865 2.6856 17 1 -1.6435 -7.9849 2.7974 18 6 -3.3882 -7.5709 1.6036 19 6 -2.6465 -7.9038 0.3075 20 8 -3.5908 -8.2634 -0.7029 21 6 -3.1070 -6.9749 4.0136 22 6 -2.0999 -6.7172 5.1046 23 6 -1.6994 -5.4240 5.3841 24 6 -0.7760 -5.1874 6.3853 25 6 -0.2536 -6.2441 7.1074 26 6 -0.6501 -7.5377 6.8243 27 6 -1.5767 -7.7739 5.8261 28 6 -0.4073 -3.5153 1.5691 29 6 0.2255 -2.3606 1.2163 30 1 -0.4850 0.8401 0.0004 31 1 2.6857 -3.6894 -0.7479 32 1 1.5463 -5.7506 -0.0984 33 1 -2.0212 -5.0942 2.6255 34 1 -3.9570 -8.4415 1.9305 35 1 -4.0684 -6.7372 1.4292 36 1 -2.0778 -7.0332 -0.0195 37 1 -1.9664 -8.7375 0.4819 38 1 -3.1901 -8.4872 -1.5541 39 1 -3.6854 -7.8663 4.2563 40 1 -3.7766 -6.1193 3.9278 41 1 -2.1079 -4.5984 4.8202 42 1 -0.4629 -4.1771 6.6034 43 1 0.4675 -6.0593 7.8898 44 1 -0.2386 -8.3637 7.3855 45 1 -1.8899 -8.7843 5.6080 46 1 -1.2736 -3.4802 2.2130 47 1 -0.1390 -1.4112 1.5797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799814414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:14 Heat of formation + Delta-G solvation = -61.926015 kcal Electronic energy + Delta-G solvation = -28892.266163 eV Core-core repulsion = 25003.520327 eV Total energy + Delta-G solvation = -3888.745836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.91131 -38.92729 -37.45165 -36.55588 -35.49675 -33.89149 -32.30435 -31.32564 -30.85907 -29.81969 -29.45939 -27.71677 -25.90697 -23.67296 -22.64129 -22.17722 -21.12448 -21.08087 -20.44800 -19.64913 -17.54829 -17.18119 -16.89339 -16.66440 -16.28352 -15.44737 -15.23419 -15.05096 -14.59897 -14.19612 -14.03870 -13.88821 -13.74849 -13.42850 -13.28906 -13.18386 -12.86174 -12.80204 -12.29365 -12.13063 -12.07877 -11.95612 -11.87412 -11.39221 -11.28591 -11.26821 -11.01440 -10.99541 -10.94630 -10.70247 -10.60518 -10.07155 -9.65716 -9.58435 -9.36565 -8.96864 -8.91166 -8.72579 -8.56251 -7.74144 -7.56044 -7.05735 -4.62256 1.35467 1.42160 2.21421 2.88596 2.92997 2.99162 3.01499 3.71970 3.74135 3.77358 3.84522 4.29811 4.54583 4.74701 4.79830 5.00884 5.03737 5.10176 5.20361 5.29228 5.41087 5.49670 5.53492 5.55928 5.63596 5.72094 5.79860 5.95638 6.00580 6.01905 6.04723 6.08239 6.24217 6.29134 6.34057 6.46370 6.52769 6.60226 6.74637 6.80476 6.93735 7.01217 7.05332 7.11323 7.41268 7.63223 7.76832 7.80131 7.83863 8.05089 8.22388 8.37753 8.61111 8.73169 9.05931 9.86310 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.009760 B = 0.003346 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.075287 B = 8365.655790 C =10219.613230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.443 4.443 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.284 4.284 13 C 0.574 3.426 14 O -0.574 6.574 15 N -0.733 5.733 16 C 0.157 3.843 17 H 0.088 0.912 18 C -0.128 4.128 19 C 0.079 3.921 20 O -0.586 6.586 21 C -0.088 4.088 22 C -0.078 4.078 23 C -0.107 4.107 24 C -0.114 4.114 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.061 4.061 29 C -0.178 4.178 30 H 0.286 0.714 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.395 0.605 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.377 0.623 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.086 0.914 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.939 -7.992 9.680 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.041 4.041 12 C -0.288 4.288 13 C 0.370 3.630 14 O -0.457 6.457 15 N -0.386 5.386 16 C 0.051 3.949 17 H 0.106 0.894 18 C -0.166 4.166 19 C 0.002 3.998 20 O -0.392 6.392 21 C -0.125 4.125 22 C -0.078 4.078 23 C -0.125 4.125 24 C -0.132 4.132 25 C -0.144 4.144 26 C -0.139 4.139 27 C -0.136 4.136 28 C -0.080 4.080 29 C -0.197 4.197 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.231 0.769 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.223 0.777 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.104 0.896 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.294 -8.474 9.882 14.459 hybrid contribution 0.601 1.181 -0.329 1.366 sum -5.694 -7.293 9.552 13.298 Atomic orbital electron populations 1.69743 1.07908 1.30030 1.31798 1.26086 0.94795 1.01852 0.91870 0.86230 0.80874 0.79985 0.79410 1.19225 1.19721 1.18081 1.19848 0.98400 0.91214 1.37624 0.89752 1.17776 0.90355 0.92144 0.87124 1.20713 1.04641 0.92715 1.07786 1.20347 0.92997 0.97060 0.93731 1.18894 1.04447 0.91101 1.14402 1.18512 0.78436 0.89583 0.76494 1.90621 1.66736 1.31605 1.56724 1.45974 1.31699 1.08579 1.52337 1.20722 0.93893 0.88906 0.91384 0.89428 1.21958 0.98380 1.01914 0.94398 1.22342 0.90007 0.99864 0.87616 1.86357 1.37634 1.91131 1.24048 1.20898 0.96247 1.03445 0.91947 1.19761 0.98053 0.93454 0.96488 1.21034 0.97824 0.96252 0.97426 1.21163 0.96902 0.99202 0.95969 1.21126 1.00158 0.92945 1.00156 1.21091 0.97818 0.96847 0.98119 1.21001 0.97768 0.98485 0.96334 1.20440 0.97219 0.92630 0.97739 1.20959 0.99859 0.96894 1.01991 0.90246 0.88473 0.88215 0.76924 0.90992 0.91207 0.92383 0.93291 0.77661 0.89552 0.90297 0.86248 0.86035 0.86371 0.86367 0.86291 0.89551 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.26 10.96 55.56 0.61 -17.66 16 2 C 0.08 1.73 5.13 -17.31 -0.09 1.65 16 3 Si 0.91 17.08 29.60 -169.99 -5.03 12.05 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.44 -10.92 9.04 -37.75 -0.34 -11.26 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.25 5.57 -106.80 -0.60 2.65 16 10 C -0.24 -5.72 9.73 -39.27 -0.38 -6.10 16 11 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 12 C -0.28 -6.29 5.89 -104.73 -0.62 -6.91 16 13 C 0.57 11.51 6.33 -12.42 -0.08 11.43 16 14 O -0.57 -12.56 13.46 5.29 0.07 -12.49 16 15 N -0.73 -11.54 4.43 -54.82 -0.24 -11.79 16 16 C 0.16 2.08 2.24 -67.93 -0.15 1.93 16 17 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 18 C -0.13 -1.70 5.26 -26.73 -0.14 -1.84 16 19 C 0.08 1.24 5.65 37.16 0.21 1.45 16 20 O -0.59 -8.69 13.66 -35.23 -0.48 -9.17 16 21 C -0.09 -0.91 4.89 -27.88 -0.14 -1.05 16 22 C -0.08 -0.91 4.95 -104.63 -0.52 -1.43 16 23 C -0.11 -1.32 9.10 -39.58 -0.36 -1.68 16 24 C -0.11 -1.38 10.05 -39.58 -0.40 -1.77 16 25 C -0.13 -1.43 10.05 -39.58 -0.40 -1.82 16 26 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 27 C -0.12 -1.34 9.70 -39.59 -0.38 -1.72 16 28 C -0.06 -1.32 9.47 -39.61 -0.38 -1.69 16 29 C -0.18 -4.27 8.63 -39.27 -0.34 -4.61 16 30 H 0.29 6.09 8.29 -40.82 -0.34 5.76 16 31 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 32 H 0.10 2.23 7.63 -52.49 -0.40 1.83 16 33 H 0.40 5.73 5.83 -40.82 -0.24 5.49 16 34 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.07 5.65 -51.92 -0.29 0.78 16 37 H 0.05 0.79 7.84 -51.93 -0.41 0.38 16 38 H 0.38 4.11 9.12 45.56 0.42 4.52 16 39 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 40 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 41 H 0.12 1.35 7.57 -52.48 -0.40 0.95 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 44 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.09 1.58 6.37 -52.49 -0.33 1.25 16 47 H 0.12 2.90 6.17 -52.49 -0.32 2.58 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -29.09 387.40 -10.83 -39.92 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -5.72 Total: 18.70 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -5.87 Total: -25.41 kcal Atomic # 7 Polarization: -29.81 SS G_CDS: 0.37 Total: -29.44 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.41 Total: -21.66 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.09 -10.83 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799814414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.007 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds