Wall clock time and date at job start Tue Mar 31 2020 22:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48504 * 109.47280 * 274.66494 * 3 2 1 5 5 H 1.48500 * 109.47199 * 34.66408 * 3 2 1 6 6 H 1.48500 * 109.47272 * 154.66362 * 3 2 1 7 7 C 1.40224 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99956 * 162.20329 * 7 2 1 9 9 C 1.41112 * 119.99909 * 342.20859 * 7 2 1 10 10 C 1.40889 * 120.10388 * 155.06138 * 9 7 2 11 11 C 1.36314 * 119.89202 * 180.02562 * 10 9 7 12 12 C 1.40011 * 120.10770 * 0.02562 * 11 10 9 13 13 C 1.47636 * 119.89893 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99930 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00507 * 179.97438 * 13 12 11 16 16 C 1.46490 * 120.00287 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.47210 * 35.00276 * 16 15 13 18 18 C 1.52999 * 109.47133 * 275.00189 * 16 15 13 19 19 C 1.52995 * 109.47304 * 65.00172 * 18 16 15 20 20 O 1.42899 * 109.47461 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.47170 * 155.00076 * 16 15 13 22 22 C 1.50697 * 109.46839 * 295.00027 * 21 16 15 23 23 C 1.38234 * 120.00136 * 90.00441 * 22 21 16 24 24 C 1.38235 * 120.00250 * 179.97438 * 23 22 21 25 25 C 1.38232 * 119.99815 * 359.97055 * 24 23 22 26 26 C 1.38234 * 119.99815 * 0.28450 * 25 24 23 27 27 C 1.38228 * 120.00220 * 359.50389 * 26 25 24 28 28 C 1.40015 * 120.20655 * 0.24909 * 12 11 10 29 29 C 1.36314 * 120.10917 * 359.49073 * 28 12 11 30 30 H 0.97003 * 120.00107 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.05040 * 359.97438 * 10 9 7 32 32 H 1.07999 * 119.94353 * 179.97438 * 11 10 9 33 33 H 0.97003 * 119.99141 * 0.02562 * 15 13 12 34 34 H 1.09008 * 109.47120 * 185.00075 * 18 16 15 35 35 H 1.08998 * 109.47109 * 304.99637 * 18 16 15 36 36 H 1.09008 * 109.46953 * 300.00005 * 19 18 16 37 37 H 1.08998 * 109.47474 * 59.99689 * 19 18 16 38 38 H 0.96702 * 114.00158 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.46945 * 175.00405 * 21 16 15 40 40 H 1.08992 * 109.46986 * 54.99940 * 21 16 15 41 41 H 1.08003 * 119.99803 * 359.96682 * 23 22 21 42 42 H 1.07999 * 119.99954 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.99773 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.99766 * 179.72621 * 26 25 24 45 45 H 1.08008 * 119.99940 * 180.27590 * 27 26 25 46 46 H 1.08002 * 119.94485 * 179.74905 * 28 12 11 47 47 H 1.07997 * 120.05729 * 180.22914 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3893 2.1034 -1.3955 5 1 1.4907 2.6222 0.7963 6 1 3.5838 1.4138 0.5991 7 6 2.0076 -1.2143 -0.0005 8 1 3.0489 -1.2365 -0.2864 9 6 1.3527 -2.4074 0.3723 10 6 1.8230 -3.6488 -0.0994 11 6 1.1867 -4.7986 0.2631 12 6 0.0672 -4.7471 1.1024 13 6 -0.6187 -5.9952 1.4916 14 8 -0.2115 -7.0655 1.0830 15 7 -1.6962 -5.9482 2.2998 16 6 -2.3771 -7.1865 2.6856 17 1 -1.6435 -7.9849 2.7974 18 6 -3.3882 -7.5709 1.6036 19 6 -2.6465 -7.9038 0.3075 20 8 -3.5908 -8.2634 -0.7029 21 6 -3.1070 -6.9749 4.0136 22 6 -2.0999 -6.7172 5.1046 23 6 -1.6994 -5.4240 5.3841 24 6 -0.7760 -5.1874 6.3853 25 6 -0.2536 -6.2441 7.1074 26 6 -0.6501 -7.5377 6.8243 27 6 -1.5767 -7.7739 5.8261 28 6 -0.4073 -3.5153 1.5691 29 6 0.2255 -2.3606 1.2163 30 1 -0.4850 0.8401 0.0004 31 1 2.6857 -3.6894 -0.7479 32 1 1.5463 -5.7506 -0.0984 33 1 -2.0212 -5.0942 2.6255 34 1 -3.9570 -8.4415 1.9305 35 1 -4.0684 -6.7372 1.4292 36 1 -2.0778 -7.0332 -0.0195 37 1 -1.9664 -8.7375 0.4819 38 1 -3.1901 -8.4872 -1.5541 39 1 -3.6854 -7.8663 4.2563 40 1 -3.7766 -6.1193 3.9278 41 1 -2.1079 -4.5984 4.8202 42 1 -0.4629 -4.1771 6.6034 43 1 0.4675 -6.0593 7.8898 44 1 -0.2386 -8.3637 7.3855 45 1 -1.8899 -8.7843 5.6080 46 1 -1.2736 -3.4802 2.2130 47 1 -0.1390 -1.4112 1.5797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799814414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:13 Heat of formation + Delta-G solvation = -77.934452 kcal Electronic energy + Delta-G solvation = -28892.960341 eV Core-core repulsion = 25003.520327 eV Total energy + Delta-G solvation = -3889.440014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.20774 -40.03604 -39.06643 -37.88219 -36.71540 -35.65582 -33.52801 -32.52230 -31.73501 -31.44393 -31.26294 -28.74812 -27.61184 -24.80860 -23.84203 -23.42686 -22.82456 -22.13693 -21.66373 -21.18945 -19.35803 -18.40563 -18.32170 -17.62775 -17.58017 -17.08752 -16.19778 -16.05929 -15.88227 -15.75158 -15.41204 -15.32677 -15.02039 -14.91105 -14.49287 -14.30312 -14.22692 -13.90287 -13.84183 -13.68094 -13.36405 -13.08305 -13.03420 -12.83871 -12.80450 -12.65861 -12.39154 -12.29286 -11.96910 -11.81663 -11.76332 -11.68619 -11.36556 -11.11088 -10.89450 -10.59980 -10.02458 -9.75445 -9.56994 -9.54391 -9.38418 -8.78972 -6.47562 0.47059 0.48786 0.55572 1.15590 1.38189 1.41969 1.54096 2.14136 2.19754 2.42673 2.80735 2.87721 3.26522 3.70235 3.85278 3.92787 4.02861 4.10981 4.19605 4.27532 4.31342 4.36122 4.37813 4.40230 4.45162 4.52503 4.65748 4.67429 4.80288 4.87529 4.91716 4.94590 5.02917 5.05966 5.16990 5.18790 5.21421 5.23932 5.31085 5.58414 5.61496 5.64015 5.68048 5.77438 5.84290 5.95772 6.00187 6.17809 6.23869 6.54759 6.75091 6.77519 6.78217 6.90065 7.51035 8.16362 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.009760 B = 0.003346 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.075287 B = 8365.655790 C =10219.613230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.258 1.258 7 C -0.477 4.477 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.254 4.254 11 C -0.034 4.034 12 C -0.290 4.290 13 C 0.576 3.424 14 O -0.595 6.595 15 N -0.717 5.717 16 C 0.160 3.840 17 H 0.071 0.929 18 C -0.123 4.123 19 C 0.083 3.917 20 O -0.592 6.592 21 C -0.078 4.078 22 C -0.089 4.089 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.130 4.130 27 C -0.128 4.128 28 C -0.053 4.053 29 C -0.197 4.197 30 H 0.296 0.704 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.403 0.597 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.026 0.974 37 H 0.040 0.960 38 H 0.392 0.608 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.120 0.880 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -8.161 10.923 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.505 4.505 8 H 0.101 0.899 9 C 0.099 3.901 10 C -0.274 4.274 11 C -0.053 4.053 12 C -0.295 4.295 13 C 0.369 3.631 14 O -0.479 6.479 15 N -0.369 5.369 16 C 0.055 3.945 17 H 0.089 0.911 18 C -0.161 4.161 19 C 0.005 3.995 20 O -0.400 6.400 21 C -0.116 4.116 22 C -0.089 4.089 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.072 4.072 29 C -0.216 4.216 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.240 0.760 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.241 0.759 39 H 0.131 0.869 40 H 0.112 0.888 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.138 0.862 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.716 -8.659 11.133 16.076 hybrid contribution 0.987 1.094 -0.714 1.637 sum -6.729 -7.564 10.418 14.527 Atomic orbital electron populations 1.69760 1.09174 1.31539 1.31752 1.26876 0.95517 1.04680 0.90808 0.85148 0.79309 0.75510 0.79605 1.18648 1.18510 1.18157 1.20095 0.98694 0.92325 1.39339 0.89885 1.18113 0.91280 0.92791 0.87920 1.20846 1.05215 0.92917 1.08399 1.20493 0.93643 0.96885 0.94258 1.19237 1.04133 0.92489 1.13621 1.18220 0.79381 0.88353 0.77105 1.90610 1.67656 1.31974 1.57687 1.45850 1.30253 1.10160 1.50595 1.20855 0.93556 0.86998 0.93073 0.91056 1.21943 0.98110 1.03077 0.92972 1.22222 0.90201 0.98128 0.88899 1.86326 1.37733 1.91001 1.24936 1.20888 0.95847 1.05413 0.89409 1.19955 0.98512 0.93386 0.97044 1.21244 0.98263 0.96892 0.97870 1.21401 0.97363 0.99920 0.96445 1.21421 1.00422 0.93086 1.00507 1.21429 0.97688 0.97401 0.98238 1.21329 0.97645 0.99354 0.96208 1.20689 0.97625 0.91596 0.97245 1.20987 1.00414 0.97418 1.02765 0.89233 0.88091 0.88021 0.76017 0.88509 0.90844 0.95580 0.94193 0.75935 0.86877 0.88829 0.85762 0.85471 0.84792 0.84356 0.84484 0.86195 0.86988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.04 10.96 21.87 0.24 -37.80 16 2 C 0.04 1.86 5.13 85.35 0.44 2.30 16 3 Si 0.98 34.76 29.60 68.60 2.03 36.79 16 4 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 5 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 6 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 7 C -0.48 -24.17 9.04 23.46 0.21 -23.96 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 9 C 0.10 5.30 5.57 -21.28 -0.12 5.18 16 10 C -0.25 -12.62 9.73 22.47 0.22 -12.40 16 11 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 12 C -0.29 -12.94 5.89 -19.94 -0.12 -13.06 16 13 C 0.58 22.88 6.33 86.72 0.55 23.43 16 14 O -0.60 -26.13 13.46 -3.99 -0.05 -26.18 16 15 N -0.72 -21.54 4.43 -445.60 -1.97 -23.51 16 16 C 0.16 3.90 2.24 44.99 0.10 4.00 16 17 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 18 C -0.12 -2.96 5.26 30.59 0.16 -2.80 16 19 C 0.08 2.53 5.65 71.98 0.41 2.94 16 20 O -0.59 -16.71 13.66 -148.98 -2.04 -18.74 16 21 C -0.08 -1.38 4.89 29.85 0.15 -1.23 16 22 C -0.09 -1.90 4.95 -19.87 -0.10 -2.00 16 23 C -0.12 -2.88 9.10 22.27 0.20 -2.68 16 24 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 25 C -0.14 -2.92 10.05 22.27 0.22 -2.69 16 26 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 27 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 28 C -0.05 -2.27 9.47 22.25 0.21 -2.06 16 29 C -0.20 -9.62 8.63 22.47 0.19 -9.43 16 30 H 0.30 12.53 8.29 -92.71 -0.77 11.76 16 31 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 32 H 0.10 4.69 7.63 -2.91 -0.02 4.67 16 33 H 0.40 10.88 5.83 -92.71 -0.54 10.34 16 34 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.03 0.96 5.65 -2.38 -0.01 0.95 16 37 H 0.04 1.27 7.84 -2.39 -0.02 1.25 16 38 H 0.39 8.15 9.12 -74.06 -0.68 7.48 16 39 H 0.11 1.45 8.09 -2.39 -0.02 1.43 16 40 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 41 H 0.12 2.61 7.57 -2.91 -0.02 2.59 16 42 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 44 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 46 H 0.12 4.22 6.37 -2.91 -0.02 4.20 16 47 H 0.11 5.57 6.17 -2.91 -0.02 5.55 16 Total: -1.00 -63.90 387.40 1.60 -62.30 By element: Atomic # 1 Polarization: 50.87 SS G_CDS: -0.21 Total: 50.65 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 3.60 Total: -43.51 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -1.73 Total: -61.31 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -2.09 Total: -44.92 kcal Atomic # 14 Polarization: 34.76 SS G_CDS: 2.03 Total: 36.79 kcal Total: -63.90 1.60 -62.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799814414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.639 kcal (2) G-P(sol) polarization free energy of solvation -63.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds