Wall clock time and date at job start Tue Mar 31 2020 22:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36545 * 127.14734 * 2 1 4 4 S 1.76203 * 126.48010 * 359.93427 * 3 2 1 5 5 N 1.31281 * 107.03419 * 179.97438 * 3 2 1 6 6 N 1.28533 * 109.85761 * 359.97438 * 5 3 2 7 7 C 1.30302 * 110.07829 * 0.02562 * 6 5 3 8 8 C 1.50699 * 126.34254 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47171 * 90.01777 * 8 7 6 10 10 N 1.46506 * 109.46748 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99647 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00405 * 355.01310 * 11 10 9 13 13 N 1.34777 * 119.99916 * 175.02306 * 11 10 9 14 14 C 1.46928 * 120.63144 * 184.94431 * 13 11 10 15 15 C 1.52755 * 109.00679 * 233.58151 * 14 13 11 16 16 C 1.53037 * 109.38630 * 305.58562 * 15 14 13 17 17 C 1.50703 * 109.45264 * 181.25750 * 16 15 14 18 18 H 1.08000 * 119.99653 * 239.94064 * 17 16 15 19 19 C 1.37870 * 119.99825 * 59.93793 * 17 16 15 20 20 N 1.31514 * 120.00378 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99711 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47178 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47272 * 120.00285 * 21 19 17 24 24 H 1.48504 * 109.47218 * 239.99906 * 21 19 17 25 25 C 1.53045 * 109.53659 * 61.23828 * 16 15 14 26 26 C 1.46925 * 120.62973 * 5.22136 * 13 11 10 27 27 H 1.09003 * 109.47074 * 90.02361 * 1 2 3 28 28 H 1.08998 * 109.47487 * 210.03050 * 1 2 3 29 29 H 1.08995 * 109.47161 * 330.03268 * 1 2 3 30 30 H 1.40999 * 100.00034 * 270.00296 * 4 3 2 31 31 H 1.08993 * 109.46796 * 210.02458 * 8 7 6 32 32 H 1.08999 * 109.46380 * 330.01899 * 8 7 6 33 33 H 1.08999 * 109.47535 * 300.00419 * 9 8 7 34 34 H 1.09004 * 109.46721 * 60.01038 * 9 8 7 35 35 H 0.96996 * 119.99699 * 0.02562 * 10 9 8 36 36 H 1.08998 * 109.58607 * 353.41747 * 14 13 11 37 37 H 1.08998 * 109.58688 * 113.83561 * 14 13 11 38 38 H 1.09004 * 109.56258 * 185.55234 * 15 14 13 39 39 H 1.08991 * 109.36349 * 65.50336 * 15 14 13 40 40 H 1.09005 * 109.46192 * 301.22544 * 16 15 14 41 41 H 0.97004 * 120.00075 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.49537 * 178.68056 * 25 16 15 43 43 H 1.09004 * 109.51736 * 58.60710 * 25 16 15 44 44 H 1.09010 * 109.58682 * 246.16057 * 26 13 11 45 45 H 1.08995 * 109.58757 * 6.43779 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2895 1.0884 0.0000 4 16 1.7928 2.7790 -0.0016 5 7 3.5222 0.6369 0.0006 6 7 3.5165 -0.6484 0.0014 7 6 2.2907 -1.0902 0.0010 8 6 1.8622 -2.5350 0.0011 9 6 1.7160 -3.0235 1.4437 10 7 1.2989 -4.4279 1.4437 11 6 1.1057 -5.0733 2.6110 12 8 1.3644 -4.5196 3.6620 13 7 0.6259 -6.3328 2.6132 14 6 0.3081 -7.0106 3.8774 15 6 1.0407 -8.3504 3.9215 16 6 0.6947 -9.1599 2.6697 17 6 1.3923 -10.4946 2.7264 18 1 2.0923 -10.7713 1.9520 19 6 1.1368 -11.3622 3.7670 20 7 0.2840 -11.0254 4.7098 21 14 2.0020 -13.0162 3.8377 22 1 2.9057 -13.1526 2.6672 23 1 2.7966 -13.1062 5.0890 24 1 0.9920 -14.1046 3.8134 25 6 1.1530 -8.3975 1.4243 26 6 0.4165 -7.0563 1.3517 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3633 0.8902 0.5133 30 1 1.7250 3.0129 -1.3904 31 1 0.9062 -2.6304 -0.5135 32 1 2.6126 -3.1365 -0.5119 33 1 2.6721 -2.9280 1.9583 34 1 0.9655 -2.4219 1.9566 35 1 1.1617 -4.8930 0.6037 36 1 0.6304 -6.3918 4.7148 37 1 -0.7664 -7.1826 3.9398 38 1 0.7351 -8.9045 4.8090 39 1 2.1156 -8.1735 3.9548 40 1 -0.3833 -9.3152 2.6241 41 1 0.1046 -11.6357 5.4421 42 1 0.9274 -8.9852 0.5344 43 1 2.2270 -8.2202 1.4805 44 1 -0.6491 -7.2321 1.2038 45 1 0.8079 -6.4665 0.5228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820272476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:43 Heat of formation + Delta-G solvation = 55.530058 kcal Electronic energy + Delta-G solvation = -26724.928545 eV Core-core repulsion = 22905.472346 eV Total energy + Delta-G solvation = -3819.456199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.44431 -40.03523 -37.18374 -35.93460 -35.29617 -33.63359 -32.64188 -31.06471 -30.27004 -29.09791 -28.12861 -26.20264 -24.21409 -23.30284 -22.98557 -22.12579 -21.34910 -20.28065 -19.01692 -18.63528 -17.76081 -17.39201 -16.84418 -16.38782 -16.05218 -15.80308 -15.24535 -14.81220 -14.61289 -14.45812 -14.16558 -13.91559 -13.73089 -13.30068 -13.23860 -12.88404 -12.76771 -12.50573 -12.35209 -12.18611 -11.95989 -11.82905 -11.75451 -11.14924 -10.98766 -10.96274 -10.71418 -10.64506 -10.45310 -10.08062 -9.86627 -9.67162 -9.58327 -9.21575 -9.11028 -8.96948 -8.91501 -8.38438 -7.94861 -6.03299 -4.09927 0.44022 0.82216 1.78127 2.01607 2.38833 2.85908 3.27121 3.35913 3.38984 3.48067 3.73973 4.00412 4.19602 4.26268 4.40218 4.41830 4.49081 4.76693 4.81008 4.94285 5.12417 5.26676 5.29733 5.39582 5.52780 5.63706 5.70928 5.80881 6.00775 6.09087 6.22861 6.39387 6.43144 6.51294 6.58644 6.76156 6.95049 7.08332 7.21675 7.44557 7.69698 7.91438 8.04575 8.10315 8.22462 8.38908 8.86343 8.93605 9.55421 11.02125 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.001811 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.497913 B =15459.864054 C =15644.684667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.459 5.459 3 C 0.139 3.861 4 S -0.005 6.005 5 N -0.236 5.236 6 N -0.281 5.281 7 C 0.209 3.791 8 C -0.048 4.048 9 C 0.147 3.853 10 N -0.753 5.753 11 C 0.706 3.294 12 O -0.597 6.597 13 N -0.617 5.617 14 C 0.126 3.874 15 C -0.125 4.125 16 C 0.049 3.951 17 C -0.513 4.513 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.125 4.125 26 C 0.114 3.886 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.038 0.962 40 H 0.027 0.973 41 H 0.260 0.740 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.677 23.271 -13.339 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.152 5.152 3 C -0.236 4.236 4 S 0.144 5.856 5 N -0.081 5.081 6 N -0.123 5.123 7 C -0.060 4.060 8 C -0.088 4.088 9 C 0.021 3.979 10 N -0.413 5.413 11 C 0.407 3.593 12 O -0.476 6.476 13 N -0.353 5.353 14 C 0.005 3.995 15 C -0.163 4.163 16 C 0.031 3.969 17 C -0.551 4.551 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.163 4.163 26 C -0.010 4.010 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.380 24.470 -12.149 27.529 hybrid contribution -0.769 -2.004 -1.336 2.529 sum -4.149 22.466 -13.486 26.529 Atomic orbital electron populations 1.22307 0.74444 1.06569 1.04641 1.46989 1.09342 1.05824 1.53051 1.25921 0.89798 0.94429 1.13408 1.87126 1.88022 0.97938 1.12468 1.74827 1.16411 1.02951 1.13871 1.74212 1.17082 1.02952 1.18074 1.24888 0.87023 0.91730 1.02399 1.20299 1.03803 0.85759 0.98972 1.20941 1.01533 0.81515 0.93920 1.45152 1.75964 1.12184 1.07996 1.15804 0.78397 0.81483 0.83575 1.90889 1.58424 1.67748 1.30539 1.47465 1.67103 1.11942 1.08799 1.21696 0.99187 0.94969 0.83692 1.21952 0.97970 0.92250 1.04142 1.18627 0.96649 0.92781 0.88849 1.21218 1.25037 1.00479 1.08394 0.92686 1.24963 0.95108 0.98249 0.95676 1.69850 1.34628 1.36200 1.12191 0.86566 0.79523 0.84101 0.77969 1.19866 1.21044 1.21079 1.22018 0.99318 0.93656 1.01292 1.21716 1.00394 0.94441 0.84420 0.89567 0.88175 0.87697 0.93228 0.88836 0.86842 0.90528 0.91868 0.76725 0.90514 0.92524 0.87793 0.94317 0.95492 0.92993 0.92122 0.92820 0.91894 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.22 10.78 59.84 0.65 0.86 16 2 N -0.46 -3.64 3.21 -120.91 -0.39 -4.03 16 3 C 0.14 1.37 8.37 -88.33 -0.74 0.63 16 4 S -0.01 -0.03 25.78 -107.50 -2.77 -2.81 16 5 N -0.24 -3.12 12.23 30.68 0.38 -2.74 16 6 N -0.28 -3.69 12.18 33.00 0.40 -3.29 16 7 C 0.21 2.01 7.32 -153.98 -1.13 0.88 16 8 C -0.05 -0.33 5.54 -27.89 -0.15 -0.49 16 9 C 0.15 1.51 5.66 -4.04 -0.02 1.49 16 10 N -0.75 -8.93 5.47 -65.22 -0.36 -9.28 16 11 C 0.71 12.04 8.30 -86.92 -0.72 11.31 16 12 O -0.60 -12.52 15.77 5.29 0.08 -12.44 16 13 N -0.62 -10.66 2.98 -178.77 -0.53 -11.19 16 14 C 0.13 2.49 6.41 -3.93 -0.03 2.46 16 15 C -0.12 -2.84 5.14 -26.84 -0.14 -2.98 16 16 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 17 C -0.51 -13.46 8.56 -34.44 -0.29 -13.75 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 20 N -0.89 -24.50 11.31 55.43 0.63 -23.87 16 21 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 C -0.12 -2.30 5.30 -26.61 -0.14 -2.44 16 26 C 0.11 1.68 6.39 -3.72 -0.02 1.65 16 27 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.10 0.26 7.88 -51.93 -0.41 -0.15 16 29 H 0.10 0.25 7.86 -51.93 -0.41 -0.15 16 30 H 0.10 0.46 9.55 96.90 0.93 1.38 16 31 H 0.09 0.38 7.93 -51.93 -0.41 -0.03 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 3.60 5.96 -40.82 -0.24 3.36 16 36 H 0.08 1.57 6.99 -51.93 -0.36 1.20 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.10 2.66 6.03 -51.93 -0.31 2.34 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 45 H 0.06 0.65 5.64 -51.93 -0.29 0.35 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -34.48 380.23 -10.16 -44.64 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.29 Total: 1.37 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.03 Total: 2.12 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.13 Total: -54.41 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.44 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.77 Total: -2.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.48 -10.16 -44.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820272476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.172 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds