Wall clock time and date at job start Tue Mar 31 2020 22:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36545 * 127.14734 * 2 1 4 4 S 1.76203 * 126.48010 * 359.93427 * 3 2 1 5 5 N 1.31281 * 107.03419 * 179.97438 * 3 2 1 6 6 N 1.28533 * 109.85761 * 359.97438 * 5 3 2 7 7 C 1.30302 * 110.07829 * 0.02562 * 6 5 3 8 8 C 1.50699 * 126.34254 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47171 * 90.01777 * 8 7 6 10 10 N 1.46506 * 109.46748 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99647 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00405 * 355.01310 * 11 10 9 13 13 N 1.34777 * 119.99916 * 175.02306 * 11 10 9 14 14 C 1.46928 * 120.63144 * 184.94431 * 13 11 10 15 15 C 1.52755 * 109.00679 * 233.58151 * 14 13 11 16 16 C 1.53037 * 109.38630 * 305.58562 * 15 14 13 17 17 C 1.50703 * 109.45264 * 181.25750 * 16 15 14 18 18 H 1.08000 * 119.99653 * 239.94064 * 17 16 15 19 19 C 1.37870 * 119.99825 * 59.93793 * 17 16 15 20 20 N 1.31514 * 120.00378 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99711 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47178 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47272 * 120.00285 * 21 19 17 24 24 H 1.48504 * 109.47218 * 239.99906 * 21 19 17 25 25 C 1.53045 * 109.53659 * 61.23828 * 16 15 14 26 26 C 1.46925 * 120.62973 * 5.22136 * 13 11 10 27 27 H 1.09003 * 109.47074 * 90.02361 * 1 2 3 28 28 H 1.08998 * 109.47487 * 210.03050 * 1 2 3 29 29 H 1.08995 * 109.47161 * 330.03268 * 1 2 3 30 30 H 1.40999 * 100.00034 * 270.00296 * 4 3 2 31 31 H 1.08993 * 109.46796 * 210.02458 * 8 7 6 32 32 H 1.08999 * 109.46380 * 330.01899 * 8 7 6 33 33 H 1.08999 * 109.47535 * 300.00419 * 9 8 7 34 34 H 1.09004 * 109.46721 * 60.01038 * 9 8 7 35 35 H 0.96996 * 119.99699 * 0.02562 * 10 9 8 36 36 H 1.08998 * 109.58607 * 353.41747 * 14 13 11 37 37 H 1.08998 * 109.58688 * 113.83561 * 14 13 11 38 38 H 1.09004 * 109.56258 * 185.55234 * 15 14 13 39 39 H 1.08991 * 109.36349 * 65.50336 * 15 14 13 40 40 H 1.09005 * 109.46192 * 301.22544 * 16 15 14 41 41 H 0.97004 * 120.00075 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.49537 * 178.68056 * 25 16 15 43 43 H 1.09004 * 109.51736 * 58.60710 * 25 16 15 44 44 H 1.09010 * 109.58682 * 246.16057 * 26 13 11 45 45 H 1.08995 * 109.58757 * 6.43779 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2895 1.0884 0.0000 4 16 1.7928 2.7790 -0.0016 5 7 3.5222 0.6369 0.0006 6 7 3.5165 -0.6484 0.0014 7 6 2.2907 -1.0902 0.0010 8 6 1.8622 -2.5350 0.0011 9 6 1.7160 -3.0235 1.4437 10 7 1.2989 -4.4279 1.4437 11 6 1.1057 -5.0733 2.6110 12 8 1.3644 -4.5196 3.6620 13 7 0.6259 -6.3328 2.6132 14 6 0.3081 -7.0106 3.8774 15 6 1.0407 -8.3504 3.9215 16 6 0.6947 -9.1599 2.6697 17 6 1.3923 -10.4946 2.7264 18 1 2.0923 -10.7713 1.9520 19 6 1.1368 -11.3622 3.7670 20 7 0.2840 -11.0254 4.7098 21 14 2.0020 -13.0162 3.8377 22 1 2.9057 -13.1526 2.6672 23 1 2.7966 -13.1062 5.0890 24 1 0.9920 -14.1046 3.8134 25 6 1.1530 -8.3975 1.4243 26 6 0.4165 -7.0563 1.3517 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3633 0.8902 0.5133 30 1 1.7250 3.0129 -1.3904 31 1 0.9062 -2.6304 -0.5135 32 1 2.6126 -3.1365 -0.5119 33 1 2.6721 -2.9280 1.9583 34 1 0.9655 -2.4219 1.9566 35 1 1.1617 -4.8930 0.6037 36 1 0.6304 -6.3918 4.7148 37 1 -0.7664 -7.1826 3.9398 38 1 0.7351 -8.9045 4.8090 39 1 2.1156 -8.1735 3.9548 40 1 -0.3833 -9.3152 2.6241 41 1 0.1046 -11.6357 5.4421 42 1 0.9274 -8.9852 0.5344 43 1 2.2270 -8.2202 1.4805 44 1 -0.6491 -7.2321 1.2038 45 1 0.8079 -6.4665 0.5228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820272476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:43 Heat of formation + Delta-G solvation = 32.992256 kcal Electronic energy + Delta-G solvation = -26725.905858 eV Core-core repulsion = 22905.472346 eV Total energy + Delta-G solvation = -3820.433512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.13418 -41.37309 -38.64155 -36.86998 -36.03780 -35.36213 -33.69289 -32.72712 -31.70826 -30.01181 -28.57095 -27.91067 -25.32598 -24.46085 -23.98196 -23.64104 -22.06561 -21.71027 -20.38884 -19.28385 -19.05510 -18.30427 -18.01357 -17.51010 -17.20697 -16.79548 -16.53369 -15.98311 -15.77698 -15.46867 -15.16005 -14.90599 -14.86059 -14.52485 -14.42711 -14.23242 -13.87741 -13.63908 -13.47740 -13.20291 -12.99677 -12.88725 -12.82850 -12.69803 -12.42263 -12.40267 -12.14558 -11.90850 -11.68359 -11.42026 -11.34373 -11.24758 -10.91302 -10.76588 -10.41893 -10.38967 -10.25757 -9.46276 -9.37556 -8.06307 -6.19606 -0.11274 0.19238 1.23346 1.40312 1.42138 1.43922 1.53281 1.73282 1.76551 2.14530 2.44788 2.85679 3.20600 3.29572 3.59180 3.71854 3.76807 4.11979 4.14975 4.27175 4.30999 4.32172 4.37915 4.50692 4.54281 4.63101 4.64933 4.75788 4.79509 4.88792 4.89856 4.94161 5.02322 5.22091 5.26813 5.41070 5.50131 5.53146 5.57471 5.67916 6.01100 6.07857 6.15178 6.41045 6.92587 7.01481 7.37149 7.48558 7.56679 8.97082 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.001811 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.497913 B =15459.864054 C =15644.684667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.453 5.453 3 C 0.138 3.862 4 S 0.003 5.997 5 N -0.287 5.287 6 N -0.327 5.327 7 C 0.208 3.792 8 C -0.034 4.034 9 C 0.151 3.849 10 N -0.728 5.728 11 C 0.703 3.297 12 O -0.641 6.641 13 N -0.620 5.620 14 C 0.139 3.861 15 C -0.113 4.113 16 C 0.045 3.955 17 C -0.530 4.530 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.915 5.915 21 Si 0.948 3.052 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.280 1.280 25 C -0.118 4.118 26 C 0.118 3.882 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.414 0.586 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.007 0.993 41 H 0.260 0.740 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.080 0.920 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 24.147 -16.039 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.144 5.144 3 C -0.238 4.238 4 S 0.152 5.848 5 N -0.131 5.131 6 N -0.169 5.169 7 C -0.063 4.063 8 C -0.074 4.074 9 C 0.025 3.975 10 N -0.388 5.388 11 C 0.404 3.596 12 O -0.524 6.524 13 N -0.356 5.356 14 C 0.016 3.984 15 C -0.152 4.152 16 C 0.026 3.974 17 C -0.569 4.569 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.775 3.225 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.206 1.206 25 C -0.157 4.157 26 C -0.004 4.004 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.254 0.746 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.036 0.964 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.831 25.348 -14.922 29.808 hybrid contribution -0.354 -2.209 -0.507 2.294 sum -5.185 23.139 -15.429 28.290 Atomic orbital electron populations 1.22732 0.71683 1.07798 1.06700 1.47236 1.10790 1.04731 1.51686 1.26369 0.89487 0.96096 1.11877 1.87073 1.87352 0.95972 1.14435 1.74718 1.18649 1.03380 1.16315 1.74077 1.19502 1.03402 1.19960 1.25210 0.86534 0.92941 1.01601 1.20306 1.06245 0.84053 0.96787 1.20916 0.99898 0.80519 0.96120 1.44887 1.74333 1.12576 1.07042 1.15975 0.78052 0.81289 0.84284 1.90866 1.60137 1.68690 1.32669 1.47391 1.67225 1.12302 1.08677 1.21317 0.98968 0.93094 0.85037 1.21713 0.96753 0.93809 1.02948 1.18613 0.95111 0.92433 0.91205 1.21638 1.24995 1.02048 1.08179 0.92969 1.25691 0.95889 1.01429 0.95613 1.69978 1.35758 1.37124 1.12606 0.85658 0.78574 0.80510 0.77794 1.19217 1.21303 1.20589 1.21884 0.99002 0.95469 0.99302 1.21854 1.01254 0.92817 0.84514 0.87021 0.86834 0.86702 0.90834 0.84607 0.86040 0.93678 0.91699 0.74622 0.91762 0.91757 0.91023 0.96448 0.97488 0.93123 0.90609 0.93868 0.90182 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.17 10.78 127.77 1.38 1.55 16 2 N -0.45 -6.21 3.21 -536.44 -1.72 -7.94 16 3 C 0.14 2.57 8.37 179.55 1.50 4.07 16 4 S 0.00 0.03 25.78 -56.49 -1.46 -1.43 16 5 N -0.29 -7.63 12.23 -56.85 -0.70 -8.33 16 6 N -0.33 -8.63 12.18 -49.52 -0.60 -9.23 16 7 C 0.21 3.66 7.32 137.63 1.01 4.67 16 8 C -0.03 -0.36 5.54 29.85 0.17 -0.20 16 9 C 0.15 2.79 5.66 86.38 0.49 3.28 16 10 N -0.73 -15.01 5.47 -478.53 -2.62 -17.62 16 11 C 0.70 22.80 8.30 179.05 1.49 24.29 16 12 O -0.64 -26.85 15.77 -3.99 -0.06 -26.91 16 13 N -0.62 -20.39 2.98 -837.77 -2.50 -22.88 16 14 C 0.14 5.51 6.41 86.22 0.55 6.06 16 15 C -0.11 -5.32 5.14 30.53 0.16 -5.17 16 16 C 0.04 2.09 2.07 -11.51 -0.02 2.06 16 17 C -0.53 -28.06 8.56 25.60 0.22 -27.84 16 18 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 19 C 0.01 0.67 5.30 84.65 0.45 1.12 16 20 N -0.91 -51.55 11.31 21.44 0.24 -51.31 16 21 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 C -0.12 -4.15 5.30 30.67 0.16 -3.99 16 26 C 0.12 3.07 6.39 86.36 0.55 3.62 16 27 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.11 0.12 7.88 -2.39 -0.02 0.10 16 29 H 0.11 0.19 7.86 -2.39 -0.02 0.18 16 30 H 0.13 0.82 9.55 73.80 0.70 1.52 16 31 H 0.14 0.34 7.93 -2.39 -0.02 0.32 16 32 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.41 5.50 5.96 -92.71 -0.55 4.95 16 36 H 0.06 2.70 6.99 -2.39 -0.02 2.68 16 37 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.07 3.83 6.03 -2.38 -0.01 3.81 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 41 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.11 1.77 5.64 -2.39 -0.01 1.76 16 Total: -1.00 -80.06 380.23 1.90 -78.16 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.18 Total: 8.92 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 8.10 Total: 13.53 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -7.89 Total: -117.30 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.06 Total: -26.91 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.46 Total: -1.43 kcal Total: -80.06 1.90 -78.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820272476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.150 kcal (2) G-P(sol) polarization free energy of solvation -80.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds