Wall clock time and date at job start Tue Mar 31 2020 22:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36535 * 127.14095 * 2 1 4 4 S 1.76202 * 126.48429 * 359.97438 * 3 2 1 5 5 N 1.31283 * 107.03368 * 180.02562 * 3 2 1 6 6 N 1.28530 * 109.85332 * 359.72415 * 5 3 2 7 7 C 1.30293 * 110.07887 * 0.45956 * 6 5 3 8 8 C 1.50706 * 126.34118 * 179.82092 * 7 6 5 9 9 C 1.52994 * 109.46811 * 269.68367 * 8 7 6 10 10 N 1.46505 * 109.47167 * 180.02562 * 9 8 7 11 11 C 1.34772 * 120.00239 * 180.02562 * 10 9 8 12 12 O 1.21589 * 119.99961 * 5.07129 * 11 10 9 13 13 N 1.34779 * 120.00161 * 185.07262 * 11 10 9 14 14 C 1.46927 * 120.62567 * 354.96261 * 13 11 10 15 15 C 1.53194 * 108.77526 * 126.39165 * 14 13 11 16 16 C 1.53045 * 109.31256 * 54.62870 * 15 14 13 17 17 C 1.53038 * 109.54174 * 298.63830 * 16 15 14 18 18 H 1.09004 * 109.49743 * 301.38190 * 17 16 15 19 19 C 1.50699 * 109.50106 * 181.31318 * 17 16 15 20 20 H 1.08001 * 119.99482 * 0.06903 * 19 17 16 21 21 C 1.37875 * 120.00184 * 180.33894 * 19 17 16 22 22 N 1.31513 * 119.99938 * 359.72619 * 21 19 17 23 23 Si 1.86799 * 120.00097 * 179.72799 * 21 19 17 24 24 H 1.48502 * 109.47062 * 59.99806 * 23 21 19 25 25 H 1.48495 * 109.47435 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46696 * 300.00116 * 23 21 19 27 27 C 1.46925 * 120.60769 * 174.94055 * 13 11 10 28 28 H 1.08991 * 109.47141 * 269.99663 * 1 2 3 29 29 H 1.08997 * 109.47189 * 30.00361 * 1 2 3 30 30 H 1.09006 * 109.46938 * 150.00523 * 1 2 3 31 31 H 1.41007 * 99.99875 * 90.00196 * 4 3 2 32 32 H 1.09002 * 109.47005 * 149.68270 * 8 7 6 33 33 H 1.08999 * 109.46934 * 29.68478 * 8 7 6 34 34 H 1.09002 * 109.47415 * 60.00154 * 9 8 7 35 35 H 1.08999 * 109.47462 * 299.99787 * 9 8 7 36 36 H 0.96996 * 119.99506 * 0.02562 * 10 9 8 37 37 H 1.09002 * 109.58984 * 6.60710 * 14 13 11 38 38 H 1.09005 * 109.58703 * 246.17582 * 14 13 11 39 39 H 1.09006 * 109.49797 * 294.68321 * 15 14 13 40 40 H 1.08996 * 109.50106 * 174.57968 * 15 14 13 41 41 H 1.09001 * 109.45960 * 178.61288 * 16 15 14 42 42 H 1.08996 * 109.44758 * 58.65103 * 16 15 14 43 43 H 0.97000 * 119.99817 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.56469 * 113.80487 * 27 13 11 45 45 H 1.09003 * 109.61569 * 353.38129 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2894 1.0884 0.0000 4 16 1.7927 2.7789 -0.0006 5 7 3.5222 0.6371 -0.0006 6 7 3.5165 -0.6482 0.0049 7 6 2.2908 -1.0901 -0.0006 8 6 1.8624 -2.5350 -0.0007 9 6 1.7170 -3.0236 -1.4433 10 7 1.2999 -4.4280 -1.4435 11 6 1.1084 -5.0739 -2.6108 12 8 1.3699 -4.5209 -3.6616 13 7 0.6269 -6.3327 -2.6133 14 6 0.4100 -7.0537 -1.3516 15 6 -1.0343 -7.5631 -1.3167 16 6 -1.3078 -8.3955 -2.5715 17 6 -1.1343 -7.5199 -3.8146 18 1 -1.8179 -6.6726 -3.7611 19 6 -1.4352 -8.3320 -5.0479 20 1 -1.7228 -9.3688 -4.9548 21 6 -1.3380 -7.7528 -6.2954 22 7 -0.9879 -6.4902 -6.4087 23 14 -1.7036 -8.7615 -7.8245 24 1 -3.1021 -9.2579 -7.7674 25 1 -1.5290 -7.9131 -9.0307 26 1 -0.7711 -9.9153 -7.8909 27 6 0.3087 -7.0094 -3.8780 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 1.7232 3.0142 1.3879 32 1 0.9061 -2.6305 0.5134 33 1 2.6126 -3.1364 0.5127 34 1 2.6734 -2.9281 -1.9574 35 1 0.9668 -2.4221 -1.9567 36 1 1.1617 -4.8929 -0.6035 37 1 0.5802 -6.3799 -0.5118 38 1 1.0968 -7.8980 -1.2904 39 1 -1.7186 -6.7151 -1.2865 40 1 -1.1809 -8.1812 -0.4310 41 1 -2.3273 -8.7797 -2.5373 42 1 -0.6069 -9.2292 -2.6139 43 1 -0.9192 -6.0829 -7.2863 44 1 0.9876 -7.8498 -4.0233 45 1 0.4117 -6.3068 -4.7050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820289299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:48 Heat of formation + Delta-G solvation = 32.073932 kcal Electronic energy + Delta-G solvation = -27079.935616 eV Core-core repulsion = 23259.462283 eV Total energy + Delta-G solvation = -3820.473333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.14528 -41.27808 -38.58648 -36.83280 -36.04476 -35.28296 -33.76428 -33.03005 -31.47930 -30.06859 -28.58195 -27.03262 -26.24554 -24.51045 -23.99050 -23.39149 -22.07224 -21.66608 -20.34971 -19.28578 -19.03007 -18.21702 -18.00265 -17.50535 -17.18813 -16.71419 -16.55178 -15.96202 -15.68879 -15.32764 -15.26694 -15.14165 -14.83019 -14.48076 -14.36546 -14.26679 -13.86809 -13.63792 -13.50954 -13.32816 -12.90645 -12.84097 -12.70391 -12.66211 -12.41654 -12.25017 -12.22570 -11.81698 -11.70312 -11.59957 -11.26441 -11.24232 -10.93123 -10.82390 -10.48949 -10.41460 -10.21271 -9.47274 -9.24407 -8.08725 -6.25465 -0.11745 0.17635 1.22755 1.41215 1.42666 1.44010 1.51573 1.73479 1.81849 2.25838 2.43240 2.93234 3.19880 3.32273 3.58049 3.71229 3.75719 4.09529 4.12792 4.20972 4.28976 4.29815 4.33371 4.50721 4.60966 4.64987 4.75790 4.78965 4.83948 4.85641 4.88448 4.92599 5.15445 5.30490 5.31911 5.35500 5.46249 5.55443 5.58558 5.67813 5.92517 5.99925 6.19100 6.38562 6.87768 7.15474 7.35599 7.44473 7.69215 8.94076 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.002205 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.362025 B =12697.335553 C =13430.618433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.453 5.453 3 C 0.138 3.862 4 S 0.001 5.999 5 N -0.285 5.285 6 N -0.324 5.324 7 C 0.206 3.794 8 C -0.031 4.031 9 C 0.151 3.849 10 N -0.728 5.728 11 C 0.694 3.306 12 O -0.643 6.643 13 N -0.625 5.625 14 C 0.108 3.892 15 C -0.124 4.124 16 C -0.106 4.106 17 C 0.040 3.960 18 H -0.012 1.012 19 C -0.536 4.536 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.915 5.915 23 Si 0.955 3.045 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.268 1.268 27 C 0.142 3.858 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.414 0.586 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.259 0.741 44 H 0.031 0.969 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 11.523 22.740 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.145 5.145 3 C -0.238 4.238 4 S 0.150 5.850 5 N -0.129 5.129 6 N -0.167 5.167 7 C -0.064 4.064 8 C -0.070 4.070 9 C 0.025 3.975 10 N -0.389 5.389 11 C 0.396 3.604 12 O -0.524 6.524 13 N -0.361 5.361 14 C -0.014 4.014 15 C -0.162 4.162 16 C -0.144 4.144 17 C 0.020 3.980 18 H 0.006 0.994 19 C -0.574 4.574 20 H 0.080 0.920 21 C -0.190 4.190 22 N -0.553 5.553 23 Si 0.780 3.220 24 H -0.192 1.192 25 H -0.217 1.217 26 H -0.193 1.193 27 C 0.019 3.981 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.254 0.746 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.842 12.920 21.641 25.219 hybrid contribution -1.105 -1.218 -0.402 1.694 sum -0.264 11.702 21.239 24.251 Atomic orbital electron populations 1.22711 0.71817 1.07603 1.06733 1.47231 1.10753 1.04870 1.51644 1.26363 0.89491 0.96068 1.11922 1.87096 1.87416 0.95919 1.14531 1.74706 1.18528 1.03376 1.16306 1.74058 1.19315 1.03381 1.19915 1.25217 0.86576 0.92954 1.01641 1.20289 1.06279 0.84120 0.96349 1.20874 0.99535 0.80773 0.96312 1.44822 1.74860 1.12362 1.06843 1.16162 0.78486 0.81658 0.84136 1.90904 1.59828 1.68583 1.33091 1.47664 1.66431 1.12805 1.09216 1.21919 0.97533 0.97221 0.84702 1.21906 0.95841 1.00007 0.98486 1.21515 1.00531 0.97981 0.94380 1.18905 0.91451 0.93950 0.93657 0.99374 1.21513 1.46414 0.97771 0.91734 0.91991 1.25884 0.94908 0.95786 1.02419 1.70082 1.48062 1.12934 1.24245 0.85657 0.79095 0.78617 0.78591 1.19197 1.21663 1.19309 1.21583 0.96930 0.95169 0.84436 0.86721 0.86806 0.87301 0.90686 0.84787 0.85458 0.93694 0.92909 0.74612 0.87432 0.90488 0.92698 0.87691 0.93010 0.92669 0.93243 0.95108 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 10.79 127.77 1.38 1.74 16 2 N -0.45 -7.55 3.21 -536.43 -1.72 -9.27 16 3 C 0.14 2.88 8.37 179.55 1.50 4.39 16 4 S 0.00 0.02 25.78 -56.49 -1.46 -1.44 16 5 N -0.28 -8.12 12.23 -56.85 -0.70 -8.81 16 6 N -0.32 -9.13 12.17 -49.52 -0.60 -9.74 16 7 C 0.21 4.17 7.32 137.63 1.01 5.17 16 8 C -0.03 -0.41 5.54 29.85 0.17 -0.24 16 9 C 0.15 3.51 5.66 86.38 0.49 3.99 16 10 N -0.73 -18.24 5.47 -478.53 -2.62 -20.85 16 11 C 0.69 27.46 8.29 179.05 1.49 28.95 16 12 O -0.64 -33.57 15.78 -4.00 -0.06 -33.64 16 13 N -0.63 -23.99 2.97 -836.88 -2.49 -26.48 16 14 C 0.11 2.69 6.43 86.36 0.56 3.25 16 15 C -0.12 -3.22 6.08 30.67 0.19 -3.03 16 16 C -0.11 -3.88 5.11 30.62 0.16 -3.73 16 17 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 18 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 19 C -0.54 -29.21 8.57 25.60 0.22 -28.99 16 20 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 21 C 0.01 0.53 5.30 84.65 0.45 0.98 16 22 N -0.91 -55.80 11.39 21.45 0.24 -55.56 16 23 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.14 7.04 5.38 86.36 0.46 7.51 16 28 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.11 0.63 7.86 -2.39 -0.02 0.61 16 30 H 0.11 0.64 7.88 -2.38 -0.02 0.62 16 31 H 0.13 1.04 9.55 73.80 0.70 1.75 16 32 H 0.13 0.72 7.92 -2.39 -0.02 0.70 16 33 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.41 6.52 5.93 -92.71 -0.55 5.97 16 37 H 0.11 1.65 5.57 -2.39 -0.01 1.63 16 38 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 4.45 5.15 -2.39 -0.01 4.44 16 Total: -1.00 -87.33 380.43 1.85 -85.48 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.19 Total: 12.10 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 8.03 Total: 21.93 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -7.88 Total: -130.71 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.06 Total: -33.64 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.46 Total: -1.44 kcal Total: -87.33 1.85 -85.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820289299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.557 kcal (2) G-P(sol) polarization free energy of solvation -87.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds