Wall clock time and date at job start Tue Mar 31 2020 23:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00625 * 2 1 4 4 H 1.48501 * 109.46882 * 269.99677 * 3 2 1 5 5 H 1.48506 * 109.46996 * 29.99098 * 3 2 1 6 6 H 1.48496 * 109.47640 * 149.99479 * 3 2 1 7 7 C 1.37881 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99976 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99912 * 180.02562 * 7 2 1 10 10 C 1.53124 * 109.52387 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.27651 * 177.55819 * 10 9 7 12 12 N 1.46842 * 109.52656 * 300.82124 * 11 10 9 13 13 C 1.39612 * 111.00174 * 185.84451 * 12 11 10 14 14 N 1.33362 * 125.92918 * 271.45458 * 13 12 11 15 15 C 1.32898 * 109.61973 * 179.97438 * 14 13 12 16 16 C 1.40795 * 131.84577 * 180.02562 * 15 14 13 17 17 C 1.36168 * 119.38607 * 179.97438 * 16 15 14 18 18 C 1.40352 * 119.68985 * 0.02562 * 17 16 15 19 19 C 1.35088 * 120.20389 * 0.02562 * 18 17 16 20 20 N 1.36320 * 120.61836 * 359.96410 * 19 18 17 21 21 C 1.37954 * 132.36075 * 180.35677 * 20 19 18 22 22 C 1.47595 * 126.72775 * 359.96391 * 21 20 19 23 23 N 1.33940 * 126.35953 * 185.51107 * 22 21 20 24 24 N 1.28556 * 109.82295 * 179.87969 * 23 22 21 25 25 N 1.28904 * 109.80658 * 0.38972 * 24 23 22 26 26 H 0.97007 * 126.39845 * 179.76085 * 25 24 23 27 27 N 1.32305 * 126.35113 * 5.82276 * 22 21 20 28 28 C 1.46840 * 111.19863 * 61.74199 * 12 11 10 29 29 C 1.53035 * 109.52452 * 298.25893 * 28 12 11 30 30 H 0.97003 * 119.99653 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.57738 * 59.83897 * 9 7 2 32 32 H 1.08998 * 109.50001 * 297.50269 * 10 9 7 33 33 H 1.08997 * 109.50074 * 57.61649 * 10 9 7 34 34 H 1.08997 * 109.46066 * 60.84008 * 11 10 9 35 35 H 1.09002 * 109.45749 * 180.80330 * 11 10 9 36 36 H 1.08004 * 120.31145 * 359.95368 * 16 15 14 37 37 H 1.07999 * 120.15811 * 179.97438 * 17 16 15 38 38 H 1.07991 * 119.89943 * 179.97438 * 18 17 16 39 39 H 1.07997 * 119.68704 * 180.02562 * 19 18 17 40 40 H 1.08998 * 109.46452 * 178.24585 * 28 12 11 41 41 H 1.09003 * 109.46284 * 58.27258 * 28 12 11 42 42 H 1.08997 * 109.50958 * 299.23761 * 29 28 12 43 43 H 1.09007 * 109.50691 * 179.11549 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.0230 -2.6375 0.0023 11 6 5.5522 -2.6315 -0.0587 12 7 5.9921 -1.9382 -1.2761 13 6 7.3767 -2.0287 -1.4308 14 7 8.2770 -1.1815 -0.9305 15 6 9.4990 -1.5747 -1.2742 16 6 10.7707 -1.0349 -1.0023 17 6 11.8791 -1.6577 -1.4899 18 6 11.7400 -2.8258 -2.2554 19 6 10.5127 -3.3305 -2.5083 20 7 9.3961 -2.7157 -2.0252 21 6 8.0531 -3.0146 -2.1260 22 6 7.4551 -4.1612 -2.8374 23 7 6.1477 -4.3892 -3.0183 24 7 5.9828 -5.4772 -3.6830 25 7 7.1287 -6.0017 -3.9536 26 1 7.2839 -6.8255 -4.4417 27 7 8.1109 -5.1576 -3.4098 28 6 5.5528 -0.5371 -1.2775 29 6 4.0237 -0.4805 -1.2530 30 1 -0.4850 0.8401 -0.0004 31 1 3.8763 -0.6781 0.8891 32 1 3.6970 -3.1383 0.9138 33 1 3.6263 -3.1649 -0.8652 34 1 5.9484 -2.1160 0.8161 35 1 5.9191 -3.6578 -0.0724 36 1 10.8662 -0.1351 -0.4127 37 1 12.8606 -1.2542 -1.2893 38 1 12.6168 -3.3222 -2.6442 39 1 10.4154 -4.2301 -3.0980 40 1 5.9201 -0.0422 -2.1765 41 1 5.9491 -0.0314 -0.3969 42 1 3.6269 -0.9740 -2.1402 43 1 3.6981 0.5597 -1.2381 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826381063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:51 Heat of formation + Delta-G solvation = 232.906583 kcal Electronic energy + Delta-G solvation = -29389.948871 eV Core-core repulsion = 25475.033094 eV Total energy + Delta-G solvation = -3914.915776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.31506 -42.83759 -38.90345 -37.15130 -34.51527 -33.89894 -33.28384 -32.72155 -31.54447 -30.20310 -29.83425 -28.87658 -25.89334 -24.88635 -24.14618 -23.25580 -22.52289 -22.44010 -21.49159 -20.59582 -18.99948 -18.75185 -17.76610 -17.12029 -16.74551 -16.62392 -16.52272 -16.01168 -15.26480 -15.09722 -14.86229 -14.34221 -14.22692 -14.13182 -13.47014 -12.99898 -12.85499 -12.58883 -12.38447 -12.23108 -12.16779 -11.97987 -11.74207 -11.66693 -11.55330 -10.97357 -10.91661 -10.85719 -10.80796 -10.46410 -10.34171 -10.05253 -9.81057 -9.52596 -9.08885 -8.96384 -8.80271 -8.39958 -8.19239 -7.85781 -5.94727 -3.92301 0.38659 0.45153 1.04271 1.84475 2.02338 2.15944 2.88091 3.23023 3.37844 3.47828 3.50596 3.59392 3.74907 4.03068 4.12800 4.40893 4.53100 4.54468 4.63692 4.89073 5.11898 5.18783 5.36662 5.38542 5.47371 5.55780 5.70789 5.71891 5.79262 5.94588 5.96564 6.04814 6.13521 6.16506 6.27277 6.37930 6.48956 6.54624 6.66784 6.87030 6.92951 7.06005 7.31002 7.42891 7.53226 7.70827 7.78468 7.91254 8.11092 8.66811 9.10716 9.68744 11.18831 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.003750 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.919082 B = 7465.498324 C = 9154.402003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.012 3.988 10 C -0.094 4.094 11 C 0.071 3.929 12 N -0.444 5.444 13 C 0.328 3.672 14 N -0.514 5.514 15 C 0.261 3.739 16 C -0.086 4.086 17 C -0.091 4.091 18 C -0.149 4.149 19 C 0.071 3.929 20 N -0.342 5.342 21 C -0.025 4.025 22 C 0.304 3.696 23 N -0.247 5.247 24 N 0.014 4.986 25 N -0.304 5.304 26 H 0.467 0.533 27 N -0.325 5.325 28 C 0.063 3.937 29 C -0.116 4.116 30 H 0.262 0.738 31 H 0.023 0.977 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.168 0.832 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.295 -9.448 -6.944 29.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.092 0.908 9 C -0.007 4.007 10 C -0.132 4.132 11 C -0.055 4.055 12 N -0.165 5.165 13 C 0.095 3.905 14 N -0.237 5.237 15 C 0.018 3.982 16 C -0.106 4.106 17 C -0.115 4.115 18 C -0.170 4.170 19 C -0.053 4.053 20 N -0.013 5.013 21 C -0.141 4.141 22 C 0.024 3.976 23 N -0.125 5.125 24 N 0.017 4.983 25 N -0.150 5.150 26 H 0.321 0.679 27 N -0.170 5.170 28 C -0.063 4.063 29 C -0.154 4.154 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.173 0.827 37 H 0.163 0.837 38 H 0.171 0.829 39 H 0.185 0.815 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 26.197 -9.317 -7.127 28.704 hybrid contribution 1.489 0.305 -0.231 1.537 sum 27.686 -9.012 -7.358 30.031 Atomic orbital electron populations 1.69909 1.06274 1.26712 1.51444 1.25015 0.94649 0.98952 0.94668 0.86893 0.79961 0.83742 0.77949 1.20545 1.22713 1.18994 1.21049 0.88782 0.94403 1.50094 0.90776 1.19209 0.96700 0.91910 0.92832 1.21511 0.90289 0.99514 1.01854 1.22218 0.98738 0.96898 0.87616 1.59789 1.01295 1.17019 1.38441 1.19624 0.90493 0.88574 0.91771 1.70950 0.96769 1.30137 1.25873 1.20827 0.95264 0.86362 0.95756 1.20365 0.87032 1.01413 1.01786 1.21114 0.99147 0.94841 0.96398 1.20847 0.96062 0.98158 1.01909 1.21858 0.84328 0.99362 0.99763 1.42365 1.05032 1.19839 1.34095 1.16829 0.80532 1.01133 1.15653 1.21785 0.88570 0.91969 0.95291 1.75937 1.14907 1.07555 1.14077 1.78513 1.09157 1.03232 1.07375 1.50891 1.01185 1.22181 1.40759 0.67912 1.78791 1.13972 1.04602 1.19640 1.22202 0.98054 0.85400 1.00662 1.22057 0.90819 1.00176 1.02310 0.92857 0.95860 0.92007 0.90952 0.94506 0.91951 0.82651 0.83700 0.82923 0.81473 0.91837 0.93729 0.90869 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 2 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 3 Si 0.88 22.58 24.37 -169.99 -4.14 18.44 16 4 H -0.28 -6.93 6.89 56.52 0.39 -6.54 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 7 C -0.51 -14.45 9.14 -34.44 -0.31 -14.76 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 10 C -0.09 -1.96 5.32 -26.65 -0.14 -2.10 16 11 C 0.07 1.32 5.40 -3.84 -0.02 1.30 16 12 N -0.44 -8.38 4.34 -173.03 -0.75 -9.13 16 13 C 0.33 5.71 5.87 -153.90 -0.90 4.81 16 14 N -0.51 -8.58 10.75 -11.39 -0.12 -8.70 16 15 C 0.26 3.51 7.78 -155.89 -1.21 2.30 16 16 C -0.09 -0.79 10.10 -39.36 -0.40 -1.18 16 17 C -0.09 -0.57 10.07 -39.53 -0.40 -0.97 16 18 C -0.15 -0.93 9.99 -39.91 -0.40 -1.32 16 19 C 0.07 0.65 10.72 -16.68 -0.18 0.47 16 20 N -0.34 -4.41 2.96 -58.40 -0.17 -4.58 16 21 C -0.03 -0.39 7.06 -81.27 -0.57 -0.97 16 22 C 0.30 4.56 8.12 -156.34 -1.27 3.29 16 23 N -0.25 -4.03 11.97 32.02 0.38 -3.65 16 24 N 0.01 0.19 13.42 60.35 0.81 0.99 16 25 N -0.30 -2.97 8.44 60.35 0.51 -2.46 16 26 H 0.47 2.19 8.96 -331.89 -2.98 -0.79 16 27 N -0.32 -3.89 11.77 32.03 0.38 -3.52 16 28 C 0.06 1.27 5.09 -3.84 -0.02 1.25 16 29 C -0.12 -2.63 4.84 -26.65 -0.13 -2.76 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.02 0.58 7.19 -51.93 -0.37 0.21 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 36 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.17 1.32 7.08 -52.49 -0.37 0.95 16 40 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 41 H 0.04 0.91 8.05 -51.93 -0.42 0.49 16 42 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 43 H 0.05 1.21 3.39 -51.92 -0.18 1.04 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -35.59 353.12 -10.94 -46.54 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -7.71 Total: -3.12 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -6.22 Total: -8.61 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 1.81 Total: -58.56 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.14 Total: 18.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.59 -10.94 -46.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826381063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 279.444 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 243.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 232.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds