Wall clock time and date at job start Tue Mar 31 2020 23:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00625 * 2 1 4 4 H 1.48501 * 109.46882 * 269.99677 * 3 2 1 5 5 H 1.48506 * 109.46996 * 29.99098 * 3 2 1 6 6 H 1.48496 * 109.47640 * 149.99479 * 3 2 1 7 7 C 1.37881 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99976 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99912 * 180.02562 * 7 2 1 10 10 C 1.53124 * 109.52387 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.27651 * 177.55819 * 10 9 7 12 12 N 1.46842 * 109.52656 * 300.82124 * 11 10 9 13 13 C 1.39612 * 111.00174 * 185.84451 * 12 11 10 14 14 N 1.33362 * 125.92918 * 271.45458 * 13 12 11 15 15 C 1.32898 * 109.61973 * 179.97438 * 14 13 12 16 16 C 1.40795 * 131.84577 * 180.02562 * 15 14 13 17 17 C 1.36168 * 119.38607 * 179.97438 * 16 15 14 18 18 C 1.40352 * 119.68985 * 0.02562 * 17 16 15 19 19 C 1.35088 * 120.20389 * 0.02562 * 18 17 16 20 20 N 1.36320 * 120.61836 * 359.96410 * 19 18 17 21 21 C 1.37954 * 132.36075 * 180.35677 * 20 19 18 22 22 C 1.47595 * 126.72775 * 359.96391 * 21 20 19 23 23 N 1.33940 * 126.35953 * 185.51107 * 22 21 20 24 24 N 1.28556 * 109.82295 * 179.87969 * 23 22 21 25 25 N 1.28904 * 109.80658 * 0.38972 * 24 23 22 26 26 H 0.97007 * 126.39845 * 179.76085 * 25 24 23 27 27 N 1.32305 * 126.35113 * 5.82276 * 22 21 20 28 28 C 1.46840 * 111.19863 * 61.74199 * 12 11 10 29 29 C 1.53035 * 109.52452 * 298.25893 * 28 12 11 30 30 H 0.97003 * 119.99653 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.57738 * 59.83897 * 9 7 2 32 32 H 1.08998 * 109.50001 * 297.50269 * 10 9 7 33 33 H 1.08997 * 109.50074 * 57.61649 * 10 9 7 34 34 H 1.08997 * 109.46066 * 60.84008 * 11 10 9 35 35 H 1.09002 * 109.45749 * 180.80330 * 11 10 9 36 36 H 1.08004 * 120.31145 * 359.95368 * 16 15 14 37 37 H 1.07999 * 120.15811 * 179.97438 * 17 16 15 38 38 H 1.07991 * 119.89943 * 179.97438 * 18 17 16 39 39 H 1.07997 * 119.68704 * 180.02562 * 19 18 17 40 40 H 1.08998 * 109.46452 * 178.24585 * 28 12 11 41 41 H 1.09003 * 109.46284 * 58.27258 * 28 12 11 42 42 H 1.08997 * 109.50958 * 299.23761 * 29 28 12 43 43 H 1.09007 * 109.50691 * 179.11549 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.0230 -2.6375 0.0023 11 6 5.5522 -2.6315 -0.0587 12 7 5.9921 -1.9382 -1.2761 13 6 7.3767 -2.0287 -1.4308 14 7 8.2770 -1.1815 -0.9305 15 6 9.4990 -1.5747 -1.2742 16 6 10.7707 -1.0349 -1.0023 17 6 11.8791 -1.6577 -1.4899 18 6 11.7400 -2.8258 -2.2554 19 6 10.5127 -3.3305 -2.5083 20 7 9.3961 -2.7157 -2.0252 21 6 8.0531 -3.0146 -2.1260 22 6 7.4551 -4.1612 -2.8374 23 7 6.1477 -4.3892 -3.0183 24 7 5.9828 -5.4772 -3.6830 25 7 7.1287 -6.0017 -3.9536 26 1 7.2839 -6.8255 -4.4417 27 7 8.1109 -5.1576 -3.4098 28 6 5.5528 -0.5371 -1.2775 29 6 4.0237 -0.4805 -1.2530 30 1 -0.4850 0.8401 -0.0004 31 1 3.8763 -0.6781 0.8891 32 1 3.6970 -3.1383 0.9138 33 1 3.6263 -3.1649 -0.8652 34 1 5.9484 -2.1160 0.8161 35 1 5.9191 -3.6578 -0.0724 36 1 10.8662 -0.1351 -0.4127 37 1 12.8606 -1.2542 -1.2893 38 1 12.6168 -3.3222 -2.6442 39 1 10.4154 -4.2301 -3.0980 40 1 5.9201 -0.0422 -2.1765 41 1 5.9491 -0.0314 -0.3969 42 1 3.6269 -0.9740 -2.1402 43 1 3.6981 0.5597 -1.2381 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826381063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:50 Heat of formation + Delta-G solvation = 208.056167 kcal Electronic energy + Delta-G solvation = -29391.026465 eV Core-core repulsion = 25475.033094 eV Total energy + Delta-G solvation = -3915.993371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.29880 -43.77238 -40.27161 -38.20125 -35.64763 -35.34532 -34.37266 -33.75385 -33.40024 -31.84675 -30.78160 -29.89005 -27.72040 -25.78032 -25.06928 -24.48610 -24.02211 -23.72007 -22.68551 -21.83957 -20.48134 -19.90971 -18.81043 -18.68438 -17.97999 -17.71969 -17.62370 -16.98238 -16.60748 -15.99983 -15.83428 -15.76958 -15.62148 -15.20519 -15.10470 -14.82997 -14.56260 -14.16793 -13.60933 -13.39179 -13.27347 -13.20020 -12.88908 -12.76246 -12.72117 -12.61750 -12.18573 -12.08895 -11.99808 -11.86774 -11.70855 -11.68350 -11.47293 -11.40013 -10.98223 -10.85425 -10.60845 -10.10263 -9.32364 -8.86570 -8.25093 -6.27261 -0.54059 -0.20812 0.11617 0.98519 1.07160 1.33256 1.34085 1.37904 1.48753 1.80710 2.36396 2.48904 2.55769 2.66611 3.10018 3.17088 3.19542 3.60865 3.85448 3.97197 4.05445 4.08374 4.14829 4.19570 4.25277 4.35488 4.42544 4.52517 4.55851 4.63523 4.69068 4.80070 4.85839 4.91724 5.01232 5.09965 5.14720 5.21675 5.27828 5.50547 5.53004 5.70162 5.70358 5.79068 5.81941 5.95929 6.29784 6.37955 6.63113 6.78874 7.09836 7.37387 8.92014 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.003750 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.919082 B = 7465.498324 C = 9154.402003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.249 1.249 7 C -0.510 4.510 8 H 0.035 0.965 9 C 0.014 3.986 10 C -0.085 4.085 11 C 0.085 3.915 12 N -0.450 5.450 13 C 0.299 3.701 14 N -0.553 5.553 15 C 0.250 3.750 16 C -0.108 4.108 17 C -0.060 4.060 18 C -0.122 4.122 19 C 0.044 3.956 20 N -0.341 5.341 21 C -0.040 4.040 22 C 0.292 3.708 23 N -0.291 5.291 24 N 0.003 4.997 25 N -0.269 5.269 26 H 0.488 0.512 27 N -0.309 5.309 28 C 0.078 3.922 29 C -0.109 4.109 30 H 0.264 0.736 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.170 0.830 37 H 0.192 0.808 38 H 0.199 0.801 39 H 0.177 0.823 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.820 -9.634 -7.808 35.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.184 4.184 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.225 1.225 6 H -0.174 1.174 7 C -0.548 4.548 8 H 0.054 0.946 9 C -0.005 4.005 10 C -0.123 4.123 11 C -0.041 4.041 12 N -0.172 5.172 13 C 0.067 3.933 14 N -0.276 5.276 15 C 0.008 3.992 16 C -0.128 4.128 17 C -0.084 4.084 18 C -0.142 4.142 19 C -0.080 4.080 20 N -0.012 5.012 21 C -0.157 4.157 22 C 0.011 3.989 23 N -0.168 5.168 24 N 0.007 4.993 25 N -0.121 5.121 26 H 0.347 0.653 27 N -0.155 5.155 28 C -0.049 4.049 29 C -0.147 4.147 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.187 0.813 37 H 0.209 0.791 38 H 0.216 0.784 39 H 0.194 0.806 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 31.761 -9.545 -8.014 34.119 hybrid contribution 0.044 0.163 -0.040 0.173 sum 31.805 -9.383 -8.054 34.124 Atomic orbital electron populations 1.70052 1.08093 1.27834 1.53206 1.25832 0.95381 1.02781 0.94391 0.85895 0.79120 0.79045 0.78735 1.19241 1.22484 1.17352 1.21330 0.91232 0.92989 1.49291 0.94618 1.19142 0.93749 0.94172 0.93417 1.21356 0.92313 0.97287 1.01365 1.21993 0.96423 0.97651 0.88030 1.59639 1.03426 1.15831 1.38271 1.19471 0.89645 0.90368 0.93861 1.70795 0.98107 1.31058 1.27683 1.21399 0.95647 0.86604 0.95596 1.20751 0.86109 1.02665 1.03288 1.21728 1.00046 0.93442 0.93155 1.21521 0.96156 0.97213 0.99282 1.22408 0.84275 1.00351 1.00938 1.42434 1.04873 1.19838 1.34036 1.16764 0.81751 1.01112 1.16025 1.21799 0.88337 0.92646 0.96083 1.75903 1.16229 1.08915 1.15769 1.78444 1.10083 1.03093 1.07692 1.50915 1.00131 1.22110 1.38930 0.65271 1.78735 1.13760 1.03999 1.19044 1.21940 0.95516 0.86670 1.00808 1.21876 0.93129 0.99059 1.00661 0.92659 0.96173 0.91754 0.92342 0.94673 0.90887 0.81298 0.79120 0.78354 0.80587 0.91070 0.94153 0.92161 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.74 13.96 21.45 0.30 -61.44 16 2 C 0.01 0.77 5.45 84.66 0.46 1.23 16 3 Si 0.94 47.41 24.37 68.60 1.67 49.08 16 4 H -0.27 -12.78 6.89 99.48 0.69 -12.09 16 5 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 6 H -0.25 -11.80 6.53 99.48 0.65 -11.15 16 7 C -0.51 -30.55 9.14 25.60 0.23 -30.32 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C 0.01 0.70 1.75 -11.46 -0.02 0.68 16 10 C -0.09 -3.72 5.32 30.65 0.16 -3.55 16 11 C 0.09 3.25 5.40 86.33 0.47 3.72 16 12 N -0.45 -17.41 4.34 -701.35 -3.04 -20.45 16 13 C 0.30 10.56 5.87 132.37 0.78 11.33 16 14 N -0.55 -18.45 10.75 -189.95 -2.04 -20.49 16 15 C 0.25 6.38 7.78 134.00 1.04 7.42 16 16 C -0.11 -1.63 10.10 22.41 0.23 -1.40 16 17 C -0.06 -0.40 10.07 22.30 0.22 -0.18 16 18 C -0.12 -0.82 9.99 22.06 0.22 -0.59 16 19 C 0.04 0.65 10.72 83.27 0.89 1.54 16 20 N -0.34 -8.27 2.96 -338.69 -1.00 -9.27 16 21 C -0.04 -1.23 7.06 40.67 0.29 -0.94 16 22 C 0.29 8.67 8.12 137.00 1.11 9.79 16 23 N -0.29 -9.65 11.97 -52.61 -0.63 -10.28 16 24 N 0.00 0.08 13.42 37.02 0.50 0.58 16 25 N -0.27 -4.85 8.44 37.02 0.31 -4.54 16 26 H 0.49 3.49 8.96 -340.32 -3.05 0.43 16 27 N -0.31 -6.95 11.77 -52.58 -0.62 -7.57 16 28 C 0.08 3.15 5.09 86.33 0.44 3.59 16 29 C -0.11 -5.07 4.84 30.65 0.15 -4.92 16 30 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 31 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 32 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 36 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.19 -0.35 8.06 -2.91 -0.02 -0.37 16 38 H 0.20 -0.41 8.06 -2.92 -0.02 -0.44 16 39 H 0.18 2.20 7.08 -2.91 -0.02 2.18 16 40 H 0.07 2.74 8.11 -2.39 -0.02 2.72 16 41 H 0.04 1.65 8.05 -2.39 -0.02 1.63 16 42 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.04 2.05 3.39 -2.38 -0.01 2.04 16 Total: -1.00 -83.34 353.12 0.06 -83.28 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.05 Total: 3.71 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 6.68 Total: -2.62 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -6.23 Total: -133.45 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.67 Total: 49.08 kcal Total: -83.34 0.06 -83.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826381063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 291.335 kcal (2) G-P(sol) polarization free energy of solvation -83.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 208.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds