Wall clock time and date at job start Tue Mar 31 2020 22:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46491 * 109.47289 * 2 1 4 4 C 1.46500 * 119.99801 * 269.99810 * 3 2 1 5 5 C 1.50703 * 109.47362 * 270.00009 * 4 3 2 6 6 H 1.08008 * 119.99752 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00291 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00007 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00048 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47040 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47062 * 119.99496 * 9 7 5 12 12 H 1.48494 * 109.46896 * 239.99157 * 9 7 5 13 13 C 1.34776 * 120.00452 * 90.00236 * 3 2 1 14 14 O 1.21274 * 120.00467 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99643 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47016 * 180.02562 * 15 13 3 17 17 C 1.34234 * 116.99938 * 179.97438 * 16 15 13 18 18 O 1.20822 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00068 * 179.97438 * 17 16 15 20 20 C 1.54894 * 129.08708 * 299.93813 * 19 17 16 21 21 C 1.57172 * 77.91431 * 180.16193 * 20 19 17 22 22 C 1.50697 * 129.24937 * 179.19192 * 21 20 19 23 23 O 1.20822 * 120.00401 * 241.28765 * 22 21 20 24 24 O 1.34234 * 120.00118 * 61.28738 * 22 21 20 25 25 C 1.45196 * 117.00058 * 179.97438 * 24 22 21 26 26 C 1.54404 * 129.01453 * 180.02562 * 19 17 16 27 27 C 1.54891 * 83.77518 * 317.35778 * 21 20 19 28 28 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47522 * 300.00160 * 1 2 3 30 30 H 1.09002 * 109.47121 * 60.00199 * 1 2 3 31 31 H 1.09005 * 109.47240 * 239.99518 * 2 1 3 32 32 H 1.09003 * 109.46951 * 120.00329 * 2 1 3 33 33 H 1.08996 * 109.47402 * 29.99639 * 4 3 2 34 34 H 1.08999 * 109.47280 * 150.00267 * 4 3 2 35 35 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.46943 * 60.00331 * 15 13 3 37 37 H 1.08999 * 109.47285 * 300.00471 * 15 13 3 38 38 H 1.08999 * 114.97880 * 291.96050 * 20 19 17 39 39 H 1.09000 * 114.97756 * 67.13392 * 20 19 17 40 40 H 1.08998 * 109.46958 * 180.02562 * 25 24 22 41 41 H 1.09008 * 109.47142 * 300.00201 * 25 24 22 42 42 H 1.08998 * 109.46966 * 60.00539 * 25 24 22 43 43 H 1.08995 * 114.93497 * 293.13459 * 26 19 17 44 44 H 1.09006 * 114.93239 * 68.09879 * 26 19 17 45 45 H 1.09003 * 116.11727 * 290.11914 * 27 21 20 46 46 H 1.08994 * 113.83374 * 154.95968 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 3.3495 3.1263 -3.6176 9 14 5.9136 2.0960 -3.4170 10 1 6.6009 1.2400 -2.4170 11 1 5.9205 1.4177 -4.7381 12 1 6.6216 3.3968 -3.5248 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1600 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1335 1.7127 4.8163 18 8 1.7341 0.5834 4.9746 19 6 2.4396 2.5782 6.0114 20 6 3.7790 3.2394 6.4209 21 6 2.8181 3.6996 7.5764 22 6 3.1183 4.5479 8.7852 23 8 2.9721 4.0922 9.8946 24 8 3.5482 5.8100 8.6294 25 6 3.8172 6.5686 9.8379 26 6 2.3193 2.2396 7.5131 27 6 1.8151 3.9355 6.4199 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6875 -2.0284 34 1 2.0956 3.1409 -1.1385 35 1 3.6756 3.5167 -4.4435 36 1 2.6212 0.4186 2.5302 37 1 0.9433 1.0125 2.5299 38 1 4.5604 2.5444 6.7284 39 1 4.1273 4.0264 5.7520 40 1 4.1564 7.5694 9.5706 41 1 2.9061 6.6407 10.4320 42 1 4.5905 6.0654 10.4182 43 1 1.3007 2.0862 7.8694 44 1 3.0284 1.4947 7.8744 45 1 2.0409 4.7660 5.7509 46 1 0.7703 3.8878 6.7264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830506726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:09 Heat of formation + Delta-G solvation = -94.001318 kcal Electronic energy + Delta-G solvation = -29109.409690 eV Core-core repulsion = 24776.130950 eV Total energy + Delta-G solvation = -4333.278740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.75636 -40.58179 -40.11935 -38.89611 -36.85011 -36.45421 -35.34325 -32.87049 -30.22441 -29.55141 -28.83852 -27.13874 -26.35008 -26.21453 -26.16498 -23.81018 -23.10058 -22.47988 -20.67329 -19.31313 -18.64969 -17.98454 -17.64279 -17.15364 -16.80759 -16.71453 -16.41685 -16.27816 -15.62689 -15.14129 -14.87311 -14.74351 -14.52426 -14.32418 -13.78312 -13.70842 -13.46910 -13.30944 -12.94278 -12.65113 -12.57413 -12.22626 -12.11732 -12.05498 -11.90186 -11.68238 -11.66369 -11.27176 -11.23955 -11.23307 -10.97411 -10.90530 -10.87501 -10.81910 -10.66846 -10.57731 -10.48829 -10.17451 -9.67204 -9.04486 -8.47663 -7.78989 -6.08499 -4.13366 1.57002 1.85074 1.98051 2.36519 3.20420 3.27790 3.35776 3.39804 3.54855 3.67199 3.76610 3.78640 3.87841 3.96683 4.35372 4.41716 4.68084 4.71096 4.77534 4.81453 5.05468 5.08061 5.12719 5.13697 5.16060 5.26365 5.28409 5.32774 5.36668 5.45407 5.49272 5.52458 5.55391 5.69942 5.89544 5.96358 6.16222 6.22232 6.41803 6.96034 7.29961 7.36342 7.43433 7.58403 7.87589 8.17384 8.25693 8.80908 8.95900 9.51865 10.99698 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.002267 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.612193 B =12349.267819 C =13601.877204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.049 3.951 16 O -0.320 6.320 17 C 0.526 3.474 18 O -0.498 6.498 19 C -0.141 4.141 20 C -0.069 4.069 21 C -0.152 4.152 22 C 0.531 3.469 23 O -0.496 6.496 24 O -0.349 6.349 25 C 0.035 3.965 26 C -0.056 4.056 27 C -0.068 4.068 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 -0.064 22.693 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.291 3.709 14 O -0.393 6.393 15 C -0.028 4.028 16 O -0.234 6.234 17 C 0.368 3.632 18 O -0.386 6.386 19 C -0.142 4.142 20 C -0.106 4.106 21 C -0.153 4.153 22 C 0.373 3.627 23 O -0.383 6.383 24 O -0.265 6.265 25 C -0.058 4.058 26 C -0.094 4.094 27 C -0.105 4.105 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.122 0.878 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.580 0.212 22.861 23.141 hybrid contribution 0.900 -0.357 -0.260 1.002 sum -2.680 -0.145 22.601 22.759 Atomic orbital electron populations 1.22235 0.96503 1.01727 1.02428 1.21516 0.93773 0.83932 1.03070 1.48209 1.63766 1.13417 1.07115 1.19342 0.96516 0.93717 0.77528 1.21458 0.96819 1.32022 1.06348 0.92335 1.24935 0.97930 0.94861 0.96370 1.69936 1.35628 1.33377 1.14334 0.86432 0.84525 0.78089 0.78311 1.19789 1.20954 1.20838 1.19667 0.79800 0.87159 0.84235 1.90719 1.44481 1.17445 1.86698 1.23049 1.02895 0.92632 0.84237 1.86539 1.78121 1.44848 1.13893 1.21188 0.74024 0.84960 0.82993 1.90684 1.42003 1.19258 1.86647 1.23038 1.01593 0.97280 0.92310 1.24551 0.93676 0.99336 0.93043 1.23550 1.02098 0.96881 0.92816 1.21191 0.73068 0.80326 0.88075 1.90694 1.48339 1.72912 1.26386 1.86510 1.76792 1.25172 1.38007 1.23356 1.01806 0.95408 0.85254 1.23753 1.02989 0.92627 0.89992 1.24068 0.98255 0.95072 0.93125 0.91871 0.93128 0.91767 0.89376 0.91737 0.94598 0.93677 0.92708 0.88457 0.88535 0.88980 0.87771 0.87646 0.91666 0.91651 0.88977 0.88906 0.87764 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.10 1.54 5.93 -4.05 -0.02 1.52 16 3 N -0.59 -12.05 2.46 -175.07 -0.43 -12.48 16 4 C 0.25 6.27 5.16 -5.19 -0.03 6.24 16 5 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 9 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.51 10.38 7.75 -10.98 -0.09 10.29 16 14 O -0.52 -12.95 16.08 -14.10 -0.23 -13.17 16 15 C 0.05 0.76 4.50 36.01 0.16 0.92 16 16 O -0.32 -5.06 9.75 -45.92 -0.45 -5.51 16 17 C 0.53 7.13 8.07 36.01 0.29 7.42 16 18 O -0.50 -7.50 16.84 -18.75 -0.32 -7.81 16 19 C -0.14 -1.46 3.47 -172.26 -0.60 -2.06 16 20 C -0.07 -0.61 7.95 -24.73 -0.20 -0.80 16 21 C -0.15 -1.35 3.61 -170.99 -0.62 -1.97 16 22 C 0.53 5.29 8.07 36.00 0.29 5.58 16 23 O -0.50 -6.05 16.84 -18.75 -0.32 -6.37 16 24 O -0.35 -3.10 10.57 -39.27 -0.41 -3.51 16 25 C 0.04 0.21 10.56 101.05 1.07 1.27 16 26 C -0.06 -0.50 7.77 -26.72 -0.21 -0.71 16 27 C -0.07 -0.58 7.84 -25.97 -0.20 -0.79 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.10 1.36 7.39 -51.93 -0.38 0.97 16 37 H 0.10 1.29 7.18 -51.93 -0.37 0.92 16 38 H 0.09 0.71 7.91 -51.93 -0.41 0.30 16 39 H 0.10 0.90 7.97 -51.93 -0.41 0.48 16 40 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 43 H 0.09 0.75 7.95 -51.93 -0.41 0.34 16 44 H 0.09 0.77 7.91 -51.93 -0.41 0.36 16 45 H 0.10 0.87 7.97 -51.93 -0.41 0.46 16 46 H 0.09 0.67 7.93 -51.93 -0.41 0.26 16 LS Contribution 398.67 15.07 6.01 6.01 Total: -1.00 -35.30 398.67 -7.44 -42.74 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -6.82 Total: -2.87 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -0.19 Total: 11.81 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.31 Total: -37.84 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.72 Total: -36.37 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.30 -7.44 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830506726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.260 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds