Wall clock time and date at job start Tue Mar 31 2020 22:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46491 * 109.47289 * 2 1 4 4 C 1.46500 * 119.99801 * 269.99810 * 3 2 1 5 5 C 1.50703 * 109.47362 * 270.00009 * 4 3 2 6 6 H 1.08008 * 119.99752 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00291 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00007 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 120.00048 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47040 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47062 * 119.99496 * 9 7 5 12 12 H 1.48494 * 109.46896 * 239.99157 * 9 7 5 13 13 C 1.34776 * 120.00452 * 90.00236 * 3 2 1 14 14 O 1.21274 * 120.00467 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99643 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.47016 * 180.02562 * 15 13 3 17 17 C 1.34234 * 116.99938 * 179.97438 * 16 15 13 18 18 O 1.20822 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00068 * 179.97438 * 17 16 15 20 20 C 1.54894 * 129.08708 * 299.93813 * 19 17 16 21 21 C 1.57172 * 77.91431 * 180.16193 * 20 19 17 22 22 C 1.50697 * 129.24937 * 179.19192 * 21 20 19 23 23 O 1.20822 * 120.00401 * 241.28765 * 22 21 20 24 24 O 1.34234 * 120.00118 * 61.28738 * 22 21 20 25 25 C 1.45196 * 117.00058 * 179.97438 * 24 22 21 26 26 C 1.54404 * 129.01453 * 180.02562 * 19 17 16 27 27 C 1.54891 * 83.77518 * 317.35778 * 21 20 19 28 28 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47522 * 300.00160 * 1 2 3 30 30 H 1.09002 * 109.47121 * 60.00199 * 1 2 3 31 31 H 1.09005 * 109.47240 * 239.99518 * 2 1 3 32 32 H 1.09003 * 109.46951 * 120.00329 * 2 1 3 33 33 H 1.08996 * 109.47402 * 29.99639 * 4 3 2 34 34 H 1.08999 * 109.47280 * 150.00267 * 4 3 2 35 35 H 0.97001 * 120.00168 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.46943 * 60.00331 * 15 13 3 37 37 H 1.08999 * 109.47285 * 300.00471 * 15 13 3 38 38 H 1.08999 * 114.97880 * 291.96050 * 20 19 17 39 39 H 1.09000 * 114.97756 * 67.13392 * 20 19 17 40 40 H 1.08998 * 109.46958 * 180.02562 * 25 24 22 41 41 H 1.09008 * 109.47142 * 300.00201 * 25 24 22 42 42 H 1.08998 * 109.46966 * 60.00539 * 25 24 22 43 43 H 1.08995 * 114.93497 * 293.13459 * 26 19 17 44 44 H 1.09006 * 114.93239 * 68.09879 * 26 19 17 45 45 H 1.09003 * 116.11727 * 290.11914 * 27 21 20 46 46 H 1.08994 * 113.83374 * 154.95968 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 3.3495 3.1263 -3.6176 9 14 5.9136 2.0960 -3.4170 10 1 6.6009 1.2400 -2.4170 11 1 5.9205 1.4177 -4.7381 12 1 6.6216 3.3968 -3.5248 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1600 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3055 2.1960 3.5759 17 6 2.1335 1.7127 4.8163 18 8 1.7341 0.5834 4.9746 19 6 2.4396 2.5782 6.0114 20 6 3.7790 3.2394 6.4209 21 6 2.8181 3.6996 7.5764 22 6 3.1183 4.5479 8.7852 23 8 2.9721 4.0922 9.8946 24 8 3.5482 5.8100 8.6294 25 6 3.8172 6.5686 9.8379 26 6 2.3193 2.2396 7.5131 27 6 1.8151 3.9355 6.4199 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6875 -2.0284 34 1 2.0956 3.1409 -1.1385 35 1 3.6756 3.5167 -4.4435 36 1 2.6212 0.4186 2.5302 37 1 0.9433 1.0125 2.5299 38 1 4.5604 2.5444 6.7284 39 1 4.1273 4.0264 5.7520 40 1 4.1564 7.5694 9.5706 41 1 2.9061 6.6407 10.4320 42 1 4.5905 6.0654 10.4182 43 1 1.3007 2.0862 7.8694 44 1 3.0284 1.4947 7.8744 45 1 2.0409 4.7660 5.7509 46 1 0.7703 3.8878 6.7264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830506726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:09 Heat of formation + Delta-G solvation = -114.069646 kcal Electronic energy + Delta-G solvation = -29110.279918 eV Core-core repulsion = 24776.130950 eV Total energy + Delta-G solvation = -4334.148968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.50206 -41.60922 -41.05565 -40.38563 -37.65761 -37.58739 -36.96308 -34.92881 -31.75499 -30.85285 -29.55180 -28.62340 -27.28227 -27.02191 -26.89069 -25.06904 -24.48525 -23.93343 -21.56891 -20.36844 -20.00346 -18.79109 -18.63087 -18.51638 -18.17732 -17.84056 -17.68878 -17.44021 -17.15609 -16.40910 -16.17688 -15.78774 -15.46198 -15.40831 -14.90200 -14.74234 -14.59827 -14.36144 -14.29878 -13.94229 -13.68555 -13.59776 -13.27616 -13.21321 -13.05587 -12.77728 -12.69544 -12.67583 -12.50457 -12.33345 -12.22741 -12.15445 -12.06214 -11.86410 -11.79766 -11.68323 -11.56669 -11.50623 -11.41657 -10.72103 -10.64317 -9.53200 -8.22511 -6.36689 0.76561 0.88922 1.03215 1.37754 1.40090 1.51289 1.55969 1.63345 2.30627 2.44015 2.85592 2.93228 3.06473 3.07783 3.14471 3.22149 3.42484 3.52051 3.80089 3.96384 3.98113 4.16755 4.28364 4.33311 4.39485 4.41691 4.47981 4.59352 4.60508 4.71935 4.72324 4.78511 4.81099 4.82658 4.89391 4.96165 5.04343 5.14367 5.22299 5.22600 5.37727 5.55417 5.80603 6.05096 6.47485 6.58090 6.64131 6.73026 7.22405 7.37718 8.85070 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.002267 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.612193 B =12349.267819 C =13601.877204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.061 3.939 16 O -0.339 6.339 17 C 0.531 3.469 18 O -0.513 6.513 19 C -0.159 4.159 20 C -0.064 4.064 21 C -0.149 4.149 22 C 0.535 3.465 23 O -0.523 6.523 24 O -0.355 6.355 25 C 0.027 3.973 26 C -0.051 4.051 27 C -0.061 4.061 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.029 0.971 34 H 0.000 1.000 35 H 0.267 0.733 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -1.377 24.069 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.016 4.016 16 O -0.254 6.254 17 C 0.374 3.626 18 O -0.402 6.402 19 C -0.160 4.160 20 C -0.101 4.101 21 C -0.150 4.150 22 C 0.379 3.621 23 O -0.412 6.412 24 O -0.271 6.271 25 C -0.066 4.066 26 C -0.088 4.088 27 C -0.099 4.099 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.047 0.953 34 H 0.018 0.982 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.150 0.850 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.223 -1.142 24.248 24.488 hybrid contribution 0.751 0.088 -0.658 1.002 sum -2.472 -1.053 23.590 23.743 Atomic orbital electron populations 1.22179 0.94340 1.03769 1.01875 1.21869 0.95542 0.80994 1.04442 1.48199 1.63601 1.15252 1.05683 1.18792 0.95562 0.91704 0.79773 1.21729 0.97795 1.32017 1.06547 0.92708 1.25841 1.02329 0.94485 0.96466 1.70049 1.37664 1.34178 1.14824 0.85373 0.79087 0.77994 0.78381 1.19092 1.19507 1.20811 1.20508 0.78382 0.86662 0.85776 1.90683 1.47053 1.20077 1.87713 1.22904 1.04983 0.91998 0.81685 1.86543 1.78609 1.45500 1.14781 1.21611 0.73208 0.85100 0.82669 1.90667 1.42839 1.20006 1.86662 1.23076 1.03112 0.98034 0.91745 1.24604 0.93400 0.99359 0.92783 1.23400 1.02177 0.96871 0.92527 1.21285 0.72425 0.80597 0.87829 1.90682 1.49653 1.73476 1.27347 1.86504 1.76337 1.24779 1.39474 1.23649 1.02096 0.96258 0.84552 1.23795 1.03709 0.92753 0.88549 1.24111 0.98986 0.94033 0.92737 0.88450 0.92300 0.93745 0.90061 0.88297 0.95281 0.98155 0.92383 0.86198 0.85744 0.87839 0.87779 0.85034 0.91444 0.91500 0.88211 0.88279 0.87689 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 10.24 71.98 0.74 -3.09 16 2 C 0.09 2.70 5.93 86.38 0.51 3.21 16 3 N -0.60 -24.44 2.46 -826.18 -2.03 -26.47 16 4 C 0.26 13.84 5.16 85.63 0.44 14.28 16 5 C -0.54 -30.69 9.39 25.60 0.24 -30.45 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 9 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 C 0.50 20.60 7.75 87.66 0.68 21.28 16 14 O -0.58 -29.88 16.08 15.79 0.25 -29.63 16 15 C 0.06 1.79 4.50 71.24 0.32 2.11 16 16 O -0.34 -10.41 9.75 -45.10 -0.44 -10.85 16 17 C 0.53 13.58 8.07 71.24 0.57 14.16 16 18 O -0.51 -14.39 16.84 21.98 0.37 -14.02 16 19 C -0.16 -3.05 3.47 -63.68 -0.22 -3.27 16 20 C -0.06 -1.04 7.95 31.89 0.25 -0.79 16 21 C -0.15 -2.42 3.61 -62.86 -0.23 -2.64 16 22 C 0.54 10.04 8.07 71.23 0.57 10.61 16 23 O -0.52 -12.25 16.84 21.98 0.37 -11.88 16 24 O -0.36 -5.86 10.57 -51.46 -0.54 -6.41 16 25 C 0.03 0.28 10.56 113.37 1.20 1.48 16 26 C -0.05 -0.81 7.77 30.60 0.24 -0.58 16 27 C -0.06 -0.97 7.84 31.09 0.24 -0.73 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.28 7.22 -2.39 -0.02 1.27 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 2.46 8.07 -2.38 -0.02 2.45 16 32 H 0.10 2.19 6.44 -2.39 -0.02 2.17 16 33 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 34 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 35 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.12 3.00 7.39 -2.39 -0.02 2.98 16 37 H 0.12 2.97 7.18 -2.39 -0.02 2.96 16 38 H 0.10 1.43 7.91 -2.39 -0.02 1.41 16 39 H 0.10 1.69 7.97 -2.39 -0.02 1.67 16 40 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.07 0.67 8.13 -2.39 -0.02 0.65 16 43 H 0.10 1.44 7.95 -2.39 -0.02 1.42 16 44 H 0.10 1.45 7.91 -2.38 -0.02 1.43 16 45 H 0.10 1.65 7.97 -2.39 -0.02 1.63 16 46 H 0.10 1.34 7.93 -2.39 -0.02 1.33 16 Total: -1.00 -78.94 398.67 7.31 -71.63 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.99 Total: 9.84 kcal Atomic # 6 Polarization: 20.45 SS G_CDS: 6.03 Total: 26.48 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -1.74 Total: -81.55 kcal Atomic # 8 Polarization: -72.80 SS G_CDS: 0.01 Total: -72.79 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -78.94 7.31 -71.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830506726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.439 kcal (2) G-P(sol) polarization free energy of solvation -78.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds