Wall clock time and date at job start Tue Mar 31 2020 22:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99796 * 2 1 4 4 H 1.48500 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46849 * 299.99544 * 3 2 1 6 6 H 1.48502 * 109.47409 * 59.99934 * 3 2 1 7 7 C 1.38810 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99783 * 202.13919 * 7 2 1 9 9 N 1.36931 * 119.99990 * 22.13650 * 7 2 1 10 10 C 1.46499 * 120.00364 * 16.22223 * 9 7 2 11 11 C 1.50705 * 109.46945 * 264.01092 * 10 9 7 12 12 O 1.20823 * 119.99610 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00249 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99922 * 196.21419 * 9 7 2 15 15 C 1.50708 * 109.47465 * 270.00150 * 14 9 7 16 16 O 1.21280 * 119.99770 * 0.02562 * 15 14 9 17 17 N 1.34765 * 119.99986 * 179.97438 * 15 14 9 18 18 C 1.47046 * 120.45464 * 359.90324 * 17 15 14 19 19 C 1.53367 * 108.59559 * 235.05006 * 18 17 15 20 20 N 1.46968 * 108.77824 * 310.82972 * 19 18 17 21 21 C 1.34777 * 120.59957 * 235.12224 * 20 19 18 22 22 O 1.21286 * 119.99447 * 0.02562 * 21 20 19 23 23 C 1.50697 * 120.00085 * 179.97438 * 21 20 19 24 24 C 1.52993 * 117.49827 * 248.62014 * 23 21 20 25 25 C 1.52999 * 60.00214 * 252.51114 * 24 23 21 26 26 C 1.46965 * 118.80637 * 55.14107 * 20 19 18 27 27 C 1.46968 * 120.59546 * 180.02562 * 17 15 14 28 28 H 0.97000 * 120.00157 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47107 * 24.00042 * 10 9 7 30 30 H 1.08996 * 109.47541 * 144.00641 * 10 9 7 31 31 H 0.96700 * 116.99937 * 179.97438 * 13 11 10 32 32 H 1.09000 * 109.47264 * 150.00401 * 14 9 7 33 33 H 1.08998 * 109.47342 * 30.00798 * 14 9 7 34 34 H 1.09006 * 109.48535 * 115.40070 * 18 17 15 35 35 H 1.09000 * 109.77316 * 354.86602 * 18 17 15 36 36 H 1.09006 * 109.60827 * 191.00271 * 19 18 17 37 37 H 1.08994 * 109.61418 * 70.66154 * 19 18 17 38 38 H 1.09000 * 115.54955 * 34.32838 * 23 21 20 39 39 H 1.09003 * 117.50226 * 0.02562 * 24 23 21 40 40 H 1.09004 * 117.50159 * 145.02396 * 24 23 21 41 41 H 1.08999 * 117.50045 * 252.51079 * 25 24 23 42 42 H 1.08999 * 117.49644 * 107.48655 * 25 24 23 43 43 H 1.08997 * 109.61052 * 64.52318 * 26 20 19 44 44 H 1.09000 * 109.60930 * 184.85668 * 26 20 19 45 45 H 1.09006 * 109.60732 * 5.03397 * 27 17 15 46 46 H 1.08998 * 109.61061 * 244.52622 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0305 -1.2364 0.3530 9 7 1.4013 -2.3445 -0.4458 10 6 0.1751 -2.2576 -1.2427 11 6 -1.0219 -2.4261 -0.3427 12 8 -0.8665 -2.6014 0.8426 13 8 -2.2606 -2.3816 -0.8579 14 6 1.9761 -3.6536 -0.1266 15 6 2.9494 -4.0518 -1.2061 16 8 3.1441 -3.3143 -2.1490 17 7 3.6042 -5.2268 -1.1231 18 6 3.3781 -6.1270 0.0174 19 6 4.7300 -6.4350 0.6728 20 7 5.6821 -6.8363 -0.3725 21 6 6.3372 -8.0112 -0.2894 22 8 6.1429 -8.7483 0.6539 23 6 7.3100 -8.4095 -1.3692 24 6 6.9241 -9.5849 -2.2692 25 6 8.0219 -9.7552 -1.2173 26 6 5.9072 -5.9331 -1.5098 27 6 4.5566 -5.6278 -2.1681 28 1 -0.4850 0.8400 0.0004 29 1 0.1277 -1.2846 -1.7316 30 1 0.1757 -3.0439 -1.9975 31 1 -2.9968 -2.4952 -0.2413 32 1 1.1794 -4.3949 -0.0644 33 1 2.4965 -3.5986 0.8296 34 1 2.9229 -7.0527 -0.3348 35 1 2.7213 -5.6461 0.7422 36 1 4.6120 -7.2464 1.3910 37 1 5.1003 -5.5459 1.1830 38 1 7.8708 -7.5917 -1.8217 39 1 5.9663 -10.0700 -2.0807 40 1 7.2309 -9.5407 -3.3143 41 1 9.0510 -9.8229 -1.5702 42 1 7.7866 -10.3524 -0.3364 43 1 6.3599 -5.0064 -1.1570 44 1 6.5691 -6.4118 -2.2316 45 1 4.6749 -4.8162 -2.8862 46 1 4.1880 -6.5186 -2.6767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:42 Heat of formation + Delta-G solvation = -82.819278 kcal Electronic energy + Delta-G solvation = -30433.363207 eV Core-core repulsion = 26132.862108 eV Total energy + Delta-G solvation = -4300.501099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.66979 -39.40207 -38.69002 -37.22379 -36.25215 -35.47285 -34.38035 -33.98532 -31.86477 -31.26418 -28.77181 -27.65750 -26.34473 -25.10229 -23.73331 -22.81423 -22.63139 -21.91125 -20.33994 -19.58306 -18.45480 -17.73888 -16.98522 -16.78331 -16.52943 -16.11748 -15.80145 -15.59420 -15.25035 -15.07502 -14.95676 -14.87547 -14.53385 -14.14870 -13.77449 -13.49166 -13.35758 -13.21917 -12.82142 -12.69166 -12.55666 -11.98361 -11.85125 -11.70272 -11.58886 -11.46080 -11.38619 -11.05274 -10.95407 -10.90440 -10.82664 -10.66017 -10.21858 -10.07326 -10.01763 -9.98389 -9.54189 -9.27927 -9.13583 -8.56797 -8.28674 -7.13410 -5.96474 -3.28474 2.22634 2.58301 3.18501 3.24155 3.36794 3.43787 3.47320 3.51555 3.82920 4.12195 4.27644 4.39694 4.52429 4.52961 4.62475 4.67678 4.79384 4.89645 5.00333 5.15333 5.20179 5.23406 5.25221 5.30680 5.39892 5.41556 5.54221 5.57923 5.66802 5.77042 5.78618 5.82429 5.98584 6.14619 6.22117 6.36087 6.64936 6.87588 7.00716 7.11896 7.61148 7.69212 7.80276 7.92535 8.09821 8.73883 8.95905 9.37350 9.63585 10.03930 11.15273 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.002759 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.242750 B =10145.857570 C =10862.724979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.912 3.088 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.078 0.922 9 N -0.544 5.544 10 C 0.192 3.808 11 C 0.479 3.521 12 O -0.517 6.517 13 O -0.542 6.542 14 C 0.134 3.866 15 C 0.485 3.515 16 O -0.517 6.517 17 N -0.627 5.627 18 C 0.099 3.901 19 C 0.095 3.905 20 N -0.606 5.606 21 C 0.545 3.455 22 O -0.544 6.544 23 C -0.197 4.197 24 C -0.151 4.151 25 C -0.148 4.148 26 C 0.093 3.907 27 C 0.098 3.902 28 H 0.258 0.742 29 H 0.117 0.883 30 H 0.052 0.948 31 H 0.382 0.618 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.369 -16.799 -5.145 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.219 1.219 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.261 5.261 10 C 0.063 3.937 11 C 0.319 3.681 12 O -0.403 6.403 13 O -0.352 6.352 14 C 0.003 3.997 15 C 0.271 3.729 16 O -0.389 6.389 17 N -0.366 5.366 18 C -0.026 4.026 19 C -0.028 4.028 20 N -0.339 5.339 21 C 0.334 3.666 22 O -0.421 6.421 23 C -0.218 4.218 24 C -0.188 4.188 25 C -0.186 4.186 26 C -0.030 4.030 27 C -0.026 4.026 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.069 0.931 31 H 0.237 0.763 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.122 0.878 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.624 -16.543 -5.079 20.306 hybrid contribution -0.096 1.035 0.534 1.169 sum 10.527 -15.508 -4.545 19.287 Atomic orbital electron populations 1.69869 1.05296 1.25929 1.53715 1.24799 0.95249 0.98554 1.00834 0.86080 0.79354 0.83234 0.77206 1.20215 1.21344 1.21868 1.19193 0.95309 0.84785 1.38544 0.90426 1.43421 1.23402 1.00627 1.58650 1.20167 0.80933 1.02918 0.89702 1.25221 0.83206 0.69924 0.89774 1.90501 1.85924 1.45906 1.17977 1.84626 1.17734 1.86357 1.46524 1.20707 0.94792 0.89584 0.94646 1.23179 0.81482 0.78973 0.89229 1.90638 1.63918 1.50315 1.34075 1.48445 1.44248 1.20344 1.23516 1.22066 0.96630 0.94608 0.89257 1.22062 0.88627 1.01757 0.90359 1.47965 1.42753 1.19092 1.24131 1.19681 0.80359 0.80404 0.86149 1.90684 1.65547 1.51716 1.34202 1.22217 1.03314 0.94543 1.01698 1.22936 1.00733 0.98710 0.96443 1.22958 0.97425 0.96612 1.01568 1.22228 0.98092 0.94228 0.88482 1.21807 0.88090 1.01306 0.91408 0.93214 0.86554 0.93057 0.76269 0.91233 0.89811 0.91299 0.87942 0.87931 0.90600 0.85694 0.88235 0.87688 0.87916 0.87437 0.90613 0.88695 0.87847 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 9.31 55.49 0.52 -24.95 16 2 C 0.00 0.10 4.86 -17.43 -0.08 0.01 16 3 Si 0.91 21.81 29.61 -169.99 -5.03 16.77 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.70 9.66 -15.06 -0.15 -6.85 16 8 H 0.08 2.06 7.92 -52.49 -0.42 1.65 16 9 N -0.54 -13.18 1.52 -175.98 -0.27 -13.45 16 10 C 0.19 4.54 5.49 -5.19 -0.03 4.51 16 11 C 0.48 11.30 6.54 36.01 0.24 11.53 16 12 O -0.52 -13.66 16.89 -18.75 -0.32 -13.98 16 13 O -0.54 -10.84 13.42 -39.26 -0.53 -11.36 16 14 C 0.13 2.60 4.46 -5.19 -0.02 2.57 16 15 C 0.48 8.74 7.77 -10.99 -0.09 8.65 16 16 O -0.52 -11.31 15.84 5.56 0.09 -11.23 16 17 N -0.63 -8.49 2.95 -172.44 -0.51 -9.00 16 18 C 0.10 1.09 6.51 -3.55 -0.02 1.06 16 19 C 0.10 1.02 6.59 -3.60 -0.02 1.00 16 20 N -0.61 -6.39 2.95 -172.51 -0.51 -6.90 16 21 C 0.55 6.16 7.48 -10.99 -0.08 6.08 16 22 O -0.54 -7.96 15.66 5.55 0.09 -7.87 16 23 C -0.20 -1.57 4.98 -91.78 -0.46 -2.02 16 24 C -0.15 -1.00 10.23 -26.74 -0.27 -1.27 16 25 C -0.15 -1.07 10.04 -26.73 -0.27 -1.34 16 26 C 0.09 0.85 6.47 -3.62 -0.02 0.83 16 27 C 0.10 1.10 6.60 -3.62 -0.02 1.07 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.12 3.02 6.35 -51.93 -0.33 2.69 16 30 H 0.05 1.08 8.12 -51.93 -0.42 0.66 16 31 H 0.38 5.98 9.10 45.56 0.41 6.39 16 32 H 0.07 1.23 7.85 -51.93 -0.41 0.83 16 33 H 0.08 1.55 7.61 -51.93 -0.40 1.16 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.09 5.91 -51.93 -0.31 0.78 16 36 H 0.10 1.13 6.99 -51.93 -0.36 0.76 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.13 0.76 6.78 -51.93 -0.35 0.41 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.11 0.95 7.67 -51.93 -0.40 0.55 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.62 5.63 -51.93 -0.29 0.32 16 45 H 0.10 1.30 6.99 -51.93 -0.36 0.94 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -36.22 379.37 -7.78 -44.01 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.72 Total: 6.39 kcal Atomic # 6 Polarization: 27.14 SS G_CDS: -1.31 Total: 25.83 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.77 Total: -54.29 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.67 Total: -44.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.22 -7.78 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.810 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds