Wall clock time and date at job start Tue Mar 31 2020 22:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99796 * 2 1 4 4 H 1.48500 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46849 * 299.99544 * 3 2 1 6 6 H 1.48502 * 109.47409 * 59.99934 * 3 2 1 7 7 C 1.38810 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99783 * 202.13919 * 7 2 1 9 9 N 1.36931 * 119.99990 * 22.13650 * 7 2 1 10 10 C 1.46499 * 120.00364 * 16.22223 * 9 7 2 11 11 C 1.50705 * 109.46945 * 264.01092 * 10 9 7 12 12 O 1.20823 * 119.99610 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00249 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99922 * 196.21419 * 9 7 2 15 15 C 1.50708 * 109.47465 * 270.00150 * 14 9 7 16 16 O 1.21280 * 119.99770 * 0.02562 * 15 14 9 17 17 N 1.34765 * 119.99986 * 179.97438 * 15 14 9 18 18 C 1.47046 * 120.45464 * 359.90324 * 17 15 14 19 19 C 1.53367 * 108.59559 * 235.05006 * 18 17 15 20 20 N 1.46968 * 108.77824 * 310.82972 * 19 18 17 21 21 C 1.34777 * 120.59957 * 235.12224 * 20 19 18 22 22 O 1.21286 * 119.99447 * 0.02562 * 21 20 19 23 23 C 1.50697 * 120.00085 * 179.97438 * 21 20 19 24 24 C 1.52993 * 117.49827 * 248.62014 * 23 21 20 25 25 C 1.52999 * 60.00214 * 252.51114 * 24 23 21 26 26 C 1.46965 * 118.80637 * 55.14107 * 20 19 18 27 27 C 1.46968 * 120.59546 * 180.02562 * 17 15 14 28 28 H 0.97000 * 120.00157 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47107 * 24.00042 * 10 9 7 30 30 H 1.08996 * 109.47541 * 144.00641 * 10 9 7 31 31 H 0.96700 * 116.99937 * 179.97438 * 13 11 10 32 32 H 1.09000 * 109.47264 * 150.00401 * 14 9 7 33 33 H 1.08998 * 109.47342 * 30.00798 * 14 9 7 34 34 H 1.09006 * 109.48535 * 115.40070 * 18 17 15 35 35 H 1.09000 * 109.77316 * 354.86602 * 18 17 15 36 36 H 1.09006 * 109.60827 * 191.00271 * 19 18 17 37 37 H 1.08994 * 109.61418 * 70.66154 * 19 18 17 38 38 H 1.09000 * 115.54955 * 34.32838 * 23 21 20 39 39 H 1.09003 * 117.50226 * 0.02562 * 24 23 21 40 40 H 1.09004 * 117.50159 * 145.02396 * 24 23 21 41 41 H 1.08999 * 117.50045 * 252.51079 * 25 24 23 42 42 H 1.08999 * 117.49644 * 107.48655 * 25 24 23 43 43 H 1.08997 * 109.61052 * 64.52318 * 26 20 19 44 44 H 1.09000 * 109.60930 * 184.85668 * 26 20 19 45 45 H 1.09006 * 109.60732 * 5.03397 * 27 17 15 46 46 H 1.08998 * 109.61061 * 244.52622 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0305 -1.2364 0.3530 9 7 1.4013 -2.3445 -0.4458 10 6 0.1751 -2.2576 -1.2427 11 6 -1.0219 -2.4261 -0.3427 12 8 -0.8665 -2.6014 0.8426 13 8 -2.2606 -2.3816 -0.8579 14 6 1.9761 -3.6536 -0.1266 15 6 2.9494 -4.0518 -1.2061 16 8 3.1441 -3.3143 -2.1490 17 7 3.6042 -5.2268 -1.1231 18 6 3.3781 -6.1270 0.0174 19 6 4.7300 -6.4350 0.6728 20 7 5.6821 -6.8363 -0.3725 21 6 6.3372 -8.0112 -0.2894 22 8 6.1429 -8.7483 0.6539 23 6 7.3100 -8.4095 -1.3692 24 6 6.9241 -9.5849 -2.2692 25 6 8.0219 -9.7552 -1.2173 26 6 5.9072 -5.9331 -1.5098 27 6 4.5566 -5.6278 -2.1681 28 1 -0.4850 0.8400 0.0004 29 1 0.1277 -1.2846 -1.7316 30 1 0.1757 -3.0439 -1.9975 31 1 -2.9968 -2.4952 -0.2413 32 1 1.1794 -4.3949 -0.0644 33 1 2.4965 -3.5986 0.8296 34 1 2.9229 -7.0527 -0.3348 35 1 2.7213 -5.6461 0.7422 36 1 4.6120 -7.2464 1.3910 37 1 5.1003 -5.5459 1.1830 38 1 7.8708 -7.5917 -1.8217 39 1 5.9663 -10.0700 -2.0807 40 1 7.2309 -9.5407 -3.3143 41 1 9.0510 -9.8229 -1.5702 42 1 7.7866 -10.3524 -0.3364 43 1 6.3599 -5.0064 -1.1570 44 1 6.5691 -6.4118 -2.2316 45 1 4.6749 -4.8162 -2.8862 46 1 4.1880 -6.5186 -2.6767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833065827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:41 Heat of formation + Delta-G solvation = -107.497034 kcal Electronic energy + Delta-G solvation = -30434.433315 eV Core-core repulsion = 26132.862108 eV Total energy + Delta-G solvation = -4301.571207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.61367 -40.75289 -40.34982 -38.30208 -37.25148 -36.95721 -36.21474 -35.09243 -33.46308 -32.51335 -30.21891 -29.12197 -27.97885 -25.91710 -25.02147 -24.00785 -23.31492 -22.98515 -22.02983 -20.71148 -19.40715 -18.89734 -18.72026 -18.49012 -17.69128 -17.41352 -17.00372 -16.84146 -16.52329 -16.48061 -16.30565 -16.00580 -15.67751 -15.38287 -15.25999 -15.12332 -14.59980 -14.49049 -14.04627 -13.64998 -13.51965 -13.44219 -13.32750 -12.90935 -12.74211 -12.64998 -12.50584 -12.42349 -12.38405 -12.33733 -12.11218 -12.02558 -11.86148 -11.51415 -11.39345 -11.33015 -10.89623 -10.83461 -10.49284 -10.28184 -9.34574 -9.02545 -7.99849 -5.31761 1.41141 1.44967 1.48736 1.58369 1.69578 1.79742 1.96593 2.14535 2.48181 2.74907 2.92959 3.22138 3.40620 3.49691 3.73338 3.78301 3.86946 3.95636 4.00426 4.12679 4.18073 4.26612 4.31641 4.45810 4.48978 4.54009 4.65478 4.66252 4.76523 4.77405 4.80350 4.92111 4.96350 5.05359 5.08303 5.17432 5.25057 5.36926 5.55548 5.60445 6.11094 6.14613 6.27571 6.42811 6.96467 7.07580 7.34851 7.57216 7.74762 8.07765 9.10225 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.002759 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.242750 B =10145.857570 C =10862.724979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.046 4.046 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.253 4.253 8 H 0.073 0.927 9 N -0.562 5.562 10 C 0.193 3.807 11 C 0.486 3.514 12 O -0.549 6.549 13 O -0.533 6.533 14 C 0.133 3.867 15 C 0.492 3.508 16 O -0.561 6.561 17 N -0.618 5.618 18 C 0.100 3.900 19 C 0.097 3.903 20 N -0.607 5.607 21 C 0.540 3.460 22 O -0.585 6.585 23 C -0.204 4.204 24 C -0.138 4.138 25 C -0.152 4.152 26 C 0.100 3.900 27 C 0.096 3.904 28 H 0.251 0.749 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.404 0.596 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.151 0.849 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.701 -18.135 -6.323 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.241 4.241 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.223 1.223 7 C -0.382 4.382 8 H 0.091 0.909 9 N -0.280 5.280 10 C 0.064 3.936 11 C 0.327 3.673 12 O -0.439 6.439 13 O -0.344 6.344 14 C 0.003 3.997 15 C 0.279 3.721 16 O -0.438 6.438 17 N -0.354 5.354 18 C -0.024 4.024 19 C -0.027 4.027 20 N -0.339 5.339 21 C 0.330 3.670 22 O -0.465 6.465 23 C -0.225 4.225 24 C -0.175 4.175 25 C -0.189 4.189 26 C -0.023 4.023 27 C -0.027 4.027 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.262 0.738 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.168 0.832 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.148 0.852 45 H 0.109 0.891 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.972 -17.942 -6.266 22.461 hybrid contribution -0.525 1.295 0.910 1.668 sum 11.446 -16.647 -5.356 20.900 Atomic orbital electron populations 1.69988 1.06197 1.25825 1.55300 1.25445 0.95994 1.01042 1.01600 0.85200 0.78485 0.79983 0.76623 1.19654 1.21509 1.22284 1.19379 0.95187 0.86108 1.37541 0.90929 1.43514 1.23891 1.01641 1.58961 1.20068 0.81215 1.02228 0.90094 1.25103 0.84104 0.69007 0.89088 1.90481 1.86626 1.47576 1.19168 1.84542 1.17456 1.85640 1.46800 1.20854 0.95521 0.88019 0.95348 1.22560 0.81526 0.79892 0.88129 1.90624 1.65538 1.52087 1.35521 1.48317 1.43482 1.19098 1.24477 1.22198 0.97084 0.94539 0.88542 1.21983 0.88571 1.01539 0.90580 1.48058 1.42406 1.19185 1.24209 1.20309 0.80410 0.79881 0.86361 1.90666 1.66952 1.52882 1.36045 1.22299 1.03130 0.95732 1.01302 1.23032 0.99934 0.96982 0.97563 1.23015 0.98957 0.95754 1.01223 1.22273 0.97273 0.94171 0.88539 1.21989 0.88565 1.01459 0.90676 0.93922 0.89205 0.90790 0.73754 0.89616 0.89331 0.89853 0.87617 0.88204 0.90838 0.83161 0.89470 0.84916 0.85560 0.89714 0.91122 0.85231 0.89101 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.96 9.31 21.65 0.20 -52.76 16 2 C -0.05 -2.52 4.86 84.86 0.41 -2.11 16 3 Si 0.97 45.42 29.61 68.60 2.03 47.45 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.25 -13.69 9.66 84.03 0.81 -12.88 16 8 H 0.07 3.90 7.92 -2.91 -0.02 3.88 16 9 N -0.56 -27.34 1.52 -710.69 -1.08 -28.42 16 10 C 0.19 9.15 5.49 85.63 0.47 9.62 16 11 C 0.49 22.75 6.54 71.24 0.47 23.22 16 12 O -0.55 -28.98 16.89 21.97 0.37 -28.60 16 13 O -0.53 -20.67 13.42 -51.41 -0.69 -21.36 16 14 C 0.13 5.06 4.46 85.64 0.38 5.44 16 15 C 0.49 17.38 7.77 87.66 0.68 18.06 16 16 O -0.56 -24.50 15.84 -3.03 -0.05 -24.54 16 17 N -0.62 -15.75 2.95 -817.88 -2.41 -18.17 16 18 C 0.10 2.03 6.51 86.40 0.56 2.59 16 19 C 0.10 1.96 6.59 86.41 0.57 2.53 16 20 N -0.61 -11.58 2.95 -818.10 -2.41 -14.00 16 21 C 0.54 11.29 7.48 87.66 0.66 11.95 16 22 O -0.58 -16.87 15.66 -3.05 -0.05 -16.91 16 23 C -0.20 -2.66 4.98 -11.54 -0.06 -2.71 16 24 C -0.14 -1.40 10.23 30.59 0.31 -1.09 16 25 C -0.15 -1.86 10.04 30.59 0.31 -1.55 16 26 C 0.10 1.56 6.47 86.40 0.56 2.12 16 27 C 0.10 1.94 6.60 86.40 0.57 2.51 16 28 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.09 4.76 6.35 -2.39 -0.02 4.74 16 30 H 0.07 3.09 8.12 -2.39 -0.02 3.07 16 31 H 0.40 11.98 9.10 -74.06 -0.67 11.31 16 32 H 0.09 2.95 7.85 -2.39 -0.02 2.93 16 33 H 0.09 3.25 7.61 -2.39 -0.02 3.23 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.11 2.10 5.91 -2.39 -0.01 2.09 16 36 H 0.10 2.13 6.99 -2.38 -0.02 2.11 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.15 1.17 6.78 -2.39 -0.02 1.16 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 1.45 7.67 -2.39 -0.02 1.43 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.13 1.15 5.63 -2.39 -0.01 1.13 16 45 H 0.09 2.16 6.99 -2.38 -0.02 2.14 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -79.36 379.37 2.96 -76.40 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.35 Total: 23.20 kcal Atomic # 6 Polarization: 51.00 SS G_CDS: 6.70 Total: 57.70 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -5.71 Total: -113.34 kcal Atomic # 8 Polarization: -91.01 SS G_CDS: -0.41 Total: -91.42 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -79.36 2.96 -76.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.097 kcal (2) G-P(sol) polarization free energy of solvation -79.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds