Wall clock time and date at job start Tue Mar 31 2020 22:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99991 * 2 1 4 4 C 1.50709 * 109.46786 * 293.95039 * 3 2 1 5 5 C 1.34670 * 126.58962 * 264.68265 * 4 3 2 6 6 N 1.34130 * 108.01797 * 179.87433 * 5 4 3 7 7 C 1.30497 * 109.25593 * 0.40305 * 6 5 4 8 8 N 1.35044 * 108.70060 * 359.75082 * 7 6 5 9 9 H 0.97006 * 126.39508 * 179.97438 * 8 7 6 10 10 C 1.46899 * 110.99960 * 123.94674 * 2 1 3 11 11 C 1.50700 * 109.46892 * 66.04865 * 10 2 1 12 12 N 1.29836 * 118.34791 * 0.02562 * 11 10 2 13 13 C 1.35634 * 121.62281 * 180.02562 * 12 11 10 14 14 C 1.39634 * 121.62351 * 180.02562 * 13 12 11 15 15 C 1.37708 * 119.69519 * 179.97438 * 14 13 12 16 16 C 1.38881 * 120.82922 * 0.02562 * 15 14 13 17 17 C 1.37791 * 120.56438 * 359.97438 * 16 15 14 18 18 C 1.39369 * 119.52459 * 0.02562 * 17 16 15 19 19 C 1.46965 * 121.90949 * 180.02562 * 18 17 16 20 20 O 1.21717 * 121.28222 * 0.02562 * 19 18 17 21 21 N 1.35337 * 117.42545 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.71448 * 180.02562 * 21 19 18 23 23 H 1.08011 * 120.00116 * 138.87390 * 22 21 19 24 24 C 1.39076 * 120.00110 * 318.87521 * 22 21 19 25 25 N 1.31254 * 119.99698 * 340.39960 * 24 22 21 26 26 Si 1.86800 * 120.00027 * 160.39971 * 24 22 21 27 27 H 1.48501 * 109.47013 * 90.00193 * 26 24 22 28 28 H 1.48493 * 109.47301 * 209.99829 * 26 24 22 29 29 H 1.48500 * 109.47403 * 330.00356 * 26 24 22 30 30 H 1.08994 * 109.47611 * 296.04702 * 1 2 3 31 31 H 1.09000 * 109.46839 * 56.05123 * 1 2 3 32 32 H 1.09010 * 109.46879 * 176.04610 * 1 2 3 33 33 H 1.09000 * 109.47479 * 53.94788 * 3 2 1 34 34 H 1.08998 * 109.47361 * 173.95081 * 3 2 1 35 35 H 1.08003 * 125.98819 * 0.03353 * 5 4 3 36 36 H 1.07994 * 125.64983 * 179.73161 * 7 6 5 37 37 H 1.08998 * 109.47382 * 306.04927 * 10 2 1 38 38 H 1.08998 * 109.47450 * 186.04394 * 10 2 1 39 39 H 1.08002 * 120.14917 * 359.97438 * 14 13 12 40 40 H 1.07999 * 119.59037 * 180.28305 * 15 14 13 41 41 H 1.07990 * 119.71597 * 180.02562 * 16 15 14 42 42 H 1.08006 * 120.23636 * 180.02562 * 17 16 15 43 43 H 0.97003 * 119.99888 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 -1.2986 5 6 2.4111 2.1376 -2.3968 6 7 1.7263 2.8116 -3.3327 7 6 0.5606 3.1495 -2.8532 8 7 0.4643 2.6917 -1.5864 9 1 -0.2942 2.7999 -0.9913 10 6 1.9954 -0.7658 1.1377 11 6 1.6369 -2.2203 0.9730 12 7 0.9603 -2.5734 -0.0773 13 6 0.6018 -3.8638 -0.2917 14 6 -0.1255 -4.2436 -1.4215 15 6 -0.4680 -5.5655 -1.5998 16 6 -0.0996 -6.5279 -0.6688 17 6 0.6182 -6.1781 0.4542 18 6 0.9750 -4.8457 0.6537 19 6 1.7403 -4.4145 1.8319 20 8 2.0934 -5.2106 2.6823 21 7 2.0382 -3.0983 1.9343 22 6 2.7508 -2.6448 3.0142 23 1 3.5260 -1.9051 2.8777 24 6 2.4756 -3.1372 4.2855 25 7 1.3248 -3.7197 4.5287 26 14 3.7439 -2.9697 5.6467 27 1 3.5302 -1.6889 6.3673 28 1 3.6025 -4.1018 6.5971 29 1 5.1071 -2.9849 5.0579 30 1 -0.3634 0.4512 0.9232 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0253 -0.0709 33 1 1.5610 1.9274 0.8308 34 1 3.0797 1.3444 0.1083 35 1 3.4075 1.7356 -2.5058 36 1 -0.2008 3.7037 -3.3818 37 1 1.5611 -0.3871 2.0628 38 1 3.0797 -0.6610 1.1757 39 1 -0.4179 -3.5041 -2.1523 40 1 -1.0265 -5.8581 -2.4766 41 1 -0.3774 -7.5595 -0.8267 42 1 0.9022 -6.9310 1.1746 43 1 1.1327 -4.0628 5.4154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852287380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:41 Heat of formation + Delta-G solvation = 104.151028 kcal Electronic energy + Delta-G solvation = -29252.428110 eV Core-core repulsion = 25299.636322 eV Total energy + Delta-G solvation = -3952.791787 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.00686 -40.51645 -37.77987 -37.37598 -35.78291 -33.79899 -32.47143 -31.93651 -30.92995 -30.35614 -29.13082 -27.38878 -26.36762 -25.81710 -23.42429 -22.83477 -21.52020 -21.34881 -20.79288 -20.51425 -18.78984 -17.97900 -17.71564 -16.90531 -15.84175 -15.52379 -15.17460 -15.07623 -14.66930 -14.53123 -14.35793 -14.02928 -13.91198 -13.80223 -13.66314 -13.35138 -13.01241 -12.69916 -12.50156 -12.28112 -12.21049 -11.90085 -11.70075 -11.50871 -11.30289 -11.23036 -10.99302 -10.96447 -10.67743 -10.51699 -9.99144 -9.96611 -9.59226 -8.95178 -8.76617 -8.41824 -8.37857 -8.36817 -7.99863 -7.06243 -6.72562 -4.56848 1.49020 1.66370 2.02930 2.98976 3.09659 3.10927 3.13161 3.20705 3.21505 3.70822 3.89568 4.06046 4.49514 4.65604 4.67151 4.85950 4.90204 5.03233 5.10594 5.36531 5.40294 5.46317 5.54071 5.55873 5.62830 5.68544 5.70448 5.81919 5.87944 5.93727 6.07193 6.16262 6.26572 6.39591 6.53887 6.69777 6.77497 6.80365 7.00428 7.05226 7.11848 7.19489 7.30178 7.36389 7.49684 7.57930 8.08243 8.08624 8.43482 8.68603 9.16157 9.48601 10.28398 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.004251 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.394087 B = 6584.582805 C = 9058.868822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.513 5.513 3 C 0.126 3.874 4 C -0.003 4.003 5 C -0.010 4.010 6 N -0.497 5.497 7 C 0.177 3.823 8 N -0.567 5.567 9 H 0.416 0.584 10 C 0.124 3.876 11 C 0.362 3.638 12 N -0.544 5.544 13 C 0.166 3.834 14 C -0.130 4.130 15 C -0.090 4.090 16 C -0.176 4.176 17 C -0.039 4.039 18 C -0.209 4.209 19 C 0.520 3.480 20 O -0.502 6.502 21 N -0.351 5.351 22 C -0.386 4.386 23 H 0.108 0.892 24 C 0.079 3.921 25 N -0.799 5.799 26 Si 0.928 3.072 27 H -0.273 1.273 28 H -0.277 1.277 29 H -0.263 1.263 30 H 0.012 0.988 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.039 0.961 34 H 0.099 0.901 35 H 0.168 0.832 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 9.387 -7.128 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.237 5.237 3 C -0.003 4.003 4 C -0.119 4.119 5 C -0.158 4.158 6 N -0.216 5.216 7 C -0.106 4.106 8 N -0.172 5.172 9 H 0.254 0.746 10 C -0.005 4.005 11 C 0.099 3.901 12 N -0.272 5.272 13 C 0.050 3.950 14 C -0.150 4.150 15 C -0.110 4.110 16 C -0.195 4.195 17 C -0.058 4.058 18 C -0.217 4.217 19 C 0.314 3.686 20 O -0.376 6.376 21 N -0.055 5.055 22 C -0.512 4.512 23 H 0.125 0.875 24 C -0.138 4.138 25 N -0.427 5.427 26 Si 0.752 3.248 27 H -0.199 1.199 28 H -0.202 1.202 29 H -0.187 1.187 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.186 0.814 36 H 0.220 0.780 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.044 9.140 -8.212 12.659 hybrid contribution -0.398 -0.463 3.031 3.091 sum -3.442 8.677 -5.182 10.677 Atomic orbital electron populations 1.22615 0.86938 1.05070 0.98024 1.61687 1.08686 1.10520 1.42821 1.20502 1.01265 0.88134 0.90369 1.21094 0.87909 1.03204 0.99672 1.22060 1.01086 1.03390 0.89303 1.70269 1.04388 1.15845 1.31117 1.24866 0.98306 1.03955 0.83520 1.43369 1.15694 1.43491 1.14604 0.74635 1.20748 1.00806 0.87061 0.91873 1.22616 0.89022 0.92120 0.86311 1.68455 1.21589 1.15876 1.21290 1.18846 0.94219 0.88596 0.93294 1.20592 1.01359 0.95780 0.97292 1.20973 0.98753 0.92874 0.98403 1.20832 1.03630 0.99033 0.96030 1.20880 0.94184 0.94686 0.96092 1.20852 1.06851 0.95804 0.98185 1.18192 0.82402 0.81927 0.86040 1.90664 1.53222 1.52049 1.41654 1.42242 1.39349 1.06117 1.17749 1.19569 1.18045 1.29236 0.84360 0.87498 1.25401 0.95572 0.93996 0.98814 1.69804 1.20166 1.29335 1.23383 0.85952 0.81012 0.78113 0.79735 1.19896 1.20208 1.18671 0.96978 0.92892 0.87939 0.94299 0.88242 0.81441 0.77999 0.91357 0.88332 0.85809 0.86556 0.86661 0.85952 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.99 60.06 0.54 0.85 16 2 N -0.51 -7.52 4.41 -245.82 -1.09 -8.61 16 3 C 0.13 1.45 5.52 -4.97 -0.03 1.42 16 4 C 0.00 -0.04 5.95 -81.60 -0.49 -0.52 16 5 C -0.01 -0.13 11.79 -17.81 -0.21 -0.34 16 6 N -0.50 -6.77 11.25 -14.67 -0.16 -6.93 16 7 C 0.18 1.80 13.04 -90.38 -1.18 0.62 16 8 N -0.57 -5.42 5.20 -10.30 -0.05 -5.47 16 9 H 0.42 2.87 8.71 -40.82 -0.36 2.51 16 10 C 0.12 2.08 4.08 -4.98 -0.02 2.06 16 11 C 0.36 7.71 7.22 -154.86 -1.12 6.59 16 12 N -0.54 -11.39 7.06 -8.09 -0.06 -11.45 16 13 C 0.17 3.57 6.63 -84.49 -0.56 3.01 16 14 C -0.13 -2.35 10.03 -39.25 -0.39 -2.74 16 15 C -0.09 -1.44 10.00 -39.54 -0.40 -1.84 16 16 C -0.18 -2.98 10.02 -39.51 -0.40 -3.37 16 17 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 18 C -0.21 -4.87 5.89 -104.77 -0.62 -5.49 16 19 C 0.52 13.74 6.93 -12.47 -0.09 13.65 16 20 O -0.50 -14.57 14.28 5.17 0.07 -14.50 16 21 N -0.35 -8.64 2.68 -59.56 -0.16 -8.80 16 22 C -0.39 -9.38 8.24 -14.88 -0.12 -9.51 16 23 H 0.11 2.33 7.07 -52.48 -0.37 1.96 16 24 C 0.08 1.99 4.36 -17.49 -0.08 1.91 16 25 N -0.80 -21.62 11.54 55.50 0.64 -20.98 16 26 Si 0.93 19.17 29.60 -169.99 -5.03 14.14 16 27 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 28 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 29 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.05 0.68 6.17 -51.93 -0.32 0.36 16 32 H 0.10 1.78 5.64 -51.92 -0.29 1.49 16 33 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.10 1.03 7.93 -51.93 -0.41 0.62 16 35 H 0.17 2.01 8.06 -52.48 -0.42 1.59 16 36 H 0.20 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.07 1.15 8.02 -51.93 -0.42 0.73 16 38 H 0.10 1.52 7.37 -51.93 -0.38 1.13 16 39 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 2.50 7.83 -52.48 -0.41 2.08 16 43 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -32.81 359.32 -11.01 -43.82 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.06 Total: 8.24 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -5.53 Total: 5.11 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.88 Total: -62.23 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.07 Total: -14.50 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.81 -11.01 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852287380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.971 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds