Wall clock time and date at job start Tue Mar 31 2020 22:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99991 * 2 1 4 4 C 1.50709 * 109.46786 * 293.95039 * 3 2 1 5 5 C 1.34670 * 126.58962 * 264.68265 * 4 3 2 6 6 N 1.34130 * 108.01797 * 179.87433 * 5 4 3 7 7 C 1.30497 * 109.25593 * 0.40305 * 6 5 4 8 8 N 1.35044 * 108.70060 * 359.75082 * 7 6 5 9 9 H 0.97006 * 126.39508 * 179.97438 * 8 7 6 10 10 C 1.46899 * 110.99960 * 123.94674 * 2 1 3 11 11 C 1.50700 * 109.46892 * 66.04865 * 10 2 1 12 12 N 1.29836 * 118.34791 * 0.02562 * 11 10 2 13 13 C 1.35634 * 121.62281 * 180.02562 * 12 11 10 14 14 C 1.39634 * 121.62351 * 180.02562 * 13 12 11 15 15 C 1.37708 * 119.69519 * 179.97438 * 14 13 12 16 16 C 1.38881 * 120.82922 * 0.02562 * 15 14 13 17 17 C 1.37791 * 120.56438 * 359.97438 * 16 15 14 18 18 C 1.39369 * 119.52459 * 0.02562 * 17 16 15 19 19 C 1.46965 * 121.90949 * 180.02562 * 18 17 16 20 20 O 1.21717 * 121.28222 * 0.02562 * 19 18 17 21 21 N 1.35337 * 117.42545 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.71448 * 180.02562 * 21 19 18 23 23 H 1.08011 * 120.00116 * 138.87390 * 22 21 19 24 24 C 1.39076 * 120.00110 * 318.87521 * 22 21 19 25 25 N 1.31254 * 119.99698 * 340.39960 * 24 22 21 26 26 Si 1.86800 * 120.00027 * 160.39971 * 24 22 21 27 27 H 1.48501 * 109.47013 * 90.00193 * 26 24 22 28 28 H 1.48493 * 109.47301 * 209.99829 * 26 24 22 29 29 H 1.48500 * 109.47403 * 330.00356 * 26 24 22 30 30 H 1.08994 * 109.47611 * 296.04702 * 1 2 3 31 31 H 1.09000 * 109.46839 * 56.05123 * 1 2 3 32 32 H 1.09010 * 109.46879 * 176.04610 * 1 2 3 33 33 H 1.09000 * 109.47479 * 53.94788 * 3 2 1 34 34 H 1.08998 * 109.47361 * 173.95081 * 3 2 1 35 35 H 1.08003 * 125.98819 * 0.03353 * 5 4 3 36 36 H 1.07994 * 125.64983 * 179.73161 * 7 6 5 37 37 H 1.08998 * 109.47382 * 306.04927 * 10 2 1 38 38 H 1.08998 * 109.47450 * 186.04394 * 10 2 1 39 39 H 1.08002 * 120.14917 * 359.97438 * 14 13 12 40 40 H 1.07999 * 119.59037 * 180.28305 * 15 14 13 41 41 H 1.07990 * 119.71597 * 180.02562 * 16 15 14 42 42 H 1.08006 * 120.23636 * 180.02562 * 17 16 15 43 43 H 0.97003 * 119.99888 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 -1.2986 5 6 2.4111 2.1376 -2.3968 6 7 1.7263 2.8116 -3.3327 7 6 0.5606 3.1495 -2.8532 8 7 0.4643 2.6917 -1.5864 9 1 -0.2942 2.7999 -0.9913 10 6 1.9954 -0.7658 1.1377 11 6 1.6369 -2.2203 0.9730 12 7 0.9603 -2.5734 -0.0773 13 6 0.6018 -3.8638 -0.2917 14 6 -0.1255 -4.2436 -1.4215 15 6 -0.4680 -5.5655 -1.5998 16 6 -0.0996 -6.5279 -0.6688 17 6 0.6182 -6.1781 0.4542 18 6 0.9750 -4.8457 0.6537 19 6 1.7403 -4.4145 1.8319 20 8 2.0934 -5.2106 2.6823 21 7 2.0382 -3.0983 1.9343 22 6 2.7508 -2.6448 3.0142 23 1 3.5260 -1.9051 2.8777 24 6 2.4756 -3.1372 4.2855 25 7 1.3248 -3.7197 4.5287 26 14 3.7439 -2.9697 5.6467 27 1 3.5302 -1.6889 6.3673 28 1 3.6025 -4.1018 6.5971 29 1 5.1071 -2.9849 5.0579 30 1 -0.3634 0.4512 0.9232 31 1 -0.3633 0.5739 -0.8525 32 1 -0.3633 -1.0253 -0.0709 33 1 1.5610 1.9274 0.8308 34 1 3.0797 1.3444 0.1083 35 1 3.4075 1.7356 -2.5058 36 1 -0.2008 3.7037 -3.3818 37 1 1.5611 -0.3871 2.0628 38 1 3.0797 -0.6610 1.1757 39 1 -0.4179 -3.5041 -2.1523 40 1 -1.0265 -5.8581 -2.4766 41 1 -0.3774 -7.5595 -0.8267 42 1 0.9022 -6.9310 1.1746 43 1 1.1327 -4.0628 5.4154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852287380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:40 Heat of formation + Delta-G solvation = 83.801855 kcal Electronic energy + Delta-G solvation = -29253.310516 eV Core-core repulsion = 25299.636322 eV Total energy + Delta-G solvation = -3953.674194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.85897 -42.20503 -39.25360 -38.90460 -37.34103 -35.52330 -33.71350 -33.35690 -32.11185 -31.84223 -30.49279 -28.71689 -27.64323 -27.38513 -24.91140 -24.32990 -22.79472 -22.40573 -22.14537 -21.51983 -20.50464 -19.52659 -18.79265 -18.37745 -17.48684 -16.87872 -16.59001 -16.45750 -16.06018 -15.93685 -15.62383 -15.48688 -15.17276 -15.11918 -14.94003 -14.60876 -14.24351 -14.13355 -13.82962 -13.72423 -13.58936 -13.53520 -13.05779 -12.93976 -12.68764 -12.66190 -12.48401 -12.39253 -12.26194 -12.06077 -11.29774 -10.89904 -10.83711 -10.78775 -10.43131 -10.19056 -9.91345 -9.35838 -9.09214 -8.77886 -8.51415 -6.46039 -0.08477 0.09351 1.16491 1.34486 1.42547 1.52032 1.55263 2.02478 2.25875 2.29311 2.37813 2.51817 2.90186 3.19851 3.30594 3.40672 3.82427 3.86878 3.94716 4.09980 4.16155 4.20914 4.27167 4.42582 4.46504 4.51869 4.60039 4.64545 4.67933 4.71902 4.80217 4.84806 4.96058 5.15161 5.18630 5.31259 5.36863 5.39156 5.56374 5.57925 5.79448 5.87371 5.96680 6.05707 6.18015 6.33578 6.64371 6.65363 6.87236 7.24011 7.43490 7.65448 8.46978 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.004251 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.394087 B = 6584.582805 C = 9058.868822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.522 5.522 3 C 0.130 3.870 4 C -0.007 4.007 5 C -0.033 4.033 6 N -0.540 5.540 7 C 0.190 3.810 8 N -0.559 5.559 9 H 0.430 0.570 10 C 0.133 3.867 11 C 0.352 3.648 12 N -0.531 5.531 13 C 0.137 3.863 14 C -0.127 4.127 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.068 4.068 18 C -0.239 4.239 19 C 0.494 3.506 20 O -0.553 6.553 21 N -0.369 5.369 22 C -0.401 4.401 23 H 0.127 0.873 24 C 0.032 3.968 25 N -0.850 5.850 26 Si 0.991 3.009 27 H -0.249 1.249 28 H -0.292 1.292 29 H -0.256 1.256 30 H 0.020 0.980 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.167 0.833 36 H 0.242 0.758 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.147 0.853 40 H 0.170 0.830 41 H 0.157 0.843 42 H 0.109 0.891 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 10.789 -9.475 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.246 5.246 3 C 0.002 3.998 4 C -0.124 4.124 5 C -0.181 4.181 6 N -0.260 5.260 7 C -0.094 4.094 8 N -0.164 5.164 9 H 0.270 0.730 10 C 0.004 3.996 11 C 0.089 3.911 12 N -0.257 5.257 13 C 0.022 3.978 14 C -0.146 4.146 15 C -0.092 4.092 16 C -0.170 4.170 17 C -0.087 4.087 18 C -0.246 4.246 19 C 0.290 3.710 20 O -0.432 6.432 21 N -0.073 5.073 22 C -0.527 4.527 23 H 0.144 0.856 24 C -0.180 4.180 25 N -0.480 5.480 26 Si 0.813 3.187 27 H -0.173 1.173 28 H -0.218 1.218 29 H -0.180 1.180 30 H 0.038 0.962 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.184 0.816 36 H 0.258 0.742 37 H 0.085 0.915 38 H 0.131 0.869 39 H 0.164 0.836 40 H 0.187 0.813 41 H 0.174 0.826 42 H 0.127 0.873 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.244 10.596 -10.614 15.587 hybrid contribution -0.208 -0.928 3.439 3.568 sum -4.453 9.668 -7.175 12.837 Atomic orbital electron populations 1.22477 0.86927 1.03388 0.99178 1.61639 1.08803 1.12399 1.41746 1.20533 1.01993 0.86350 0.90936 1.21006 0.88557 1.03551 0.99257 1.22229 1.01662 1.04178 0.90035 1.70249 1.06071 1.17434 1.32206 1.25623 0.97927 1.02428 0.83437 1.43344 1.15528 1.42726 1.14763 0.72969 1.20726 1.01650 0.84648 0.92593 1.23466 0.88641 0.93747 0.85271 1.68576 1.20596 1.15807 1.20692 1.19321 0.95613 0.88420 0.94414 1.20977 0.99962 0.97531 0.96160 1.21553 0.97028 0.91431 0.99195 1.21330 1.00366 1.01405 0.93865 1.21013 0.96252 0.93555 0.97914 1.21011 1.07988 0.97594 0.97988 1.18843 0.82953 0.82481 0.86677 1.90588 1.55731 1.53319 1.43528 1.42348 1.40290 1.06109 1.18582 1.20028 1.18641 1.29593 0.84467 0.85554 1.26383 0.96911 0.93411 1.01255 1.69930 1.22464 1.32068 1.23522 0.85005 0.78634 0.78389 0.76708 1.17300 1.21788 1.18007 0.96162 0.91198 0.91050 0.92553 0.87164 0.81591 0.74196 0.91533 0.86926 0.83551 0.81285 0.82586 0.87261 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 8.99 127.69 1.15 1.93 16 2 N -0.52 -14.56 4.41 -931.64 -4.11 -18.67 16 3 C 0.13 2.71 5.52 85.56 0.47 3.19 16 4 C -0.01 -0.16 5.95 40.96 0.24 0.09 16 5 C -0.03 -0.84 11.79 83.52 0.98 0.15 16 6 N -0.54 -13.84 11.25 -200.31 -2.25 -16.09 16 7 C 0.19 3.33 13.04 180.26 2.35 5.68 16 8 N -0.56 -9.08 5.20 -186.49 -0.97 -10.05 16 9 H 0.43 4.51 8.71 -92.70 -0.81 3.70 16 10 C 0.13 4.41 4.08 85.56 0.35 4.76 16 11 C 0.35 15.30 7.22 137.94 1.00 16.30 16 12 N -0.53 -22.30 7.06 -179.52 -1.27 -23.57 16 13 C 0.14 5.86 6.63 39.65 0.26 6.12 16 14 C -0.13 -4.22 10.03 22.48 0.23 -4.00 16 15 C -0.07 -2.00 10.00 22.30 0.22 -1.77 16 16 C -0.15 -4.65 10.02 22.32 0.22 -4.43 16 17 C -0.07 -2.82 9.68 22.44 0.22 -2.60 16 18 C -0.24 -11.52 5.89 -19.96 -0.12 -11.64 16 19 C 0.49 27.72 6.93 86.44 0.60 28.32 16 20 O -0.55 -34.54 14.28 -4.40 -0.06 -34.60 16 21 N -0.37 -18.96 2.68 -460.24 -1.23 -20.19 16 22 C -0.40 -20.23 8.24 84.07 0.69 -19.54 16 23 H 0.13 5.58 7.07 -2.91 -0.02 5.56 16 24 C 0.03 1.66 4.36 84.98 0.37 2.03 16 25 N -0.85 -48.83 11.54 21.68 0.25 -48.58 16 26 Si 0.99 40.56 29.60 68.60 2.03 42.59 16 27 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 28 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 29 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 30 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 1.63 6.17 -2.39 -0.01 1.62 16 32 H 0.07 2.43 5.64 -2.38 -0.01 2.42 16 33 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.11 2.07 7.93 -2.39 -0.02 2.05 16 35 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.24 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.07 2.23 8.02 -2.39 -0.02 2.21 16 38 H 0.11 3.38 7.37 -2.39 -0.02 3.36 16 39 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 40 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.16 3.56 8.06 -2.92 -0.02 3.53 16 42 H 0.11 4.73 7.83 -2.91 -0.02 4.70 16 43 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -78.07 359.32 1.88 -76.18 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.26 Total: 28.41 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 9.24 Total: 24.57 kcal Atomic # 7 Polarization: -127.57 SS G_CDS: -9.59 Total: -137.16 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.06 Total: -34.60 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -78.07 1.88 -76.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852287380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.985 kcal (2) G-P(sol) polarization free energy of solvation -78.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds