Wall clock time and date at job start Tue Mar 31 2020 22:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47040 * 2 1 4 4 C 1.34233 * 116.99742 * 180.02562 * 3 2 1 5 5 O 1.20818 * 120.00182 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99534 * 179.97438 * 4 3 2 7 7 C 1.53011 * 109.46883 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46823 * 55.00197 * 7 6 4 9 9 C 1.50698 * 109.46943 * 175.00340 * 7 6 4 10 10 H 1.08004 * 119.99527 * 240.00419 * 9 7 6 11 11 C 1.37880 * 120.00423 * 60.00043 * 9 7 6 12 12 N 1.31517 * 119.99851 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00208 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47221 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47114 * 120.00158 * 13 11 9 16 16 H 1.48497 * 109.47114 * 240.00153 * 13 11 9 17 17 O 1.45201 * 109.47081 * 295.00332 * 7 6 4 18 18 C 1.34222 * 117.00137 * 149.99883 * 17 7 6 19 19 O 1.20833 * 119.99852 * 0.02562 * 18 17 7 20 20 C 1.50696 * 120.00432 * 179.71953 * 18 17 7 21 21 H 1.09003 * 110.85420 * 59.57640 * 20 18 17 22 22 C 1.54624 * 110.97154 * 295.78984 * 20 18 17 23 23 C 1.51345 * 104.16645 * 217.10350 * 22 20 18 24 24 O 1.21280 * 124.92534 * 196.22105 * 23 22 20 25 25 N 1.34418 * 110.12946 * 16.20436 * 23 22 20 26 26 C 1.46496 * 124.34958 * 180.42039 * 25 23 22 27 27 C 1.53000 * 117.49835 * 8.76206 * 26 25 23 28 28 C 1.53004 * 117.49623 * 300.10434 * 26 25 23 29 29 C 1.46764 * 111.29927 * 0.43344 * 25 23 22 30 30 H 1.08999 * 109.46842 * 60.00283 * 1 2 3 31 31 H 1.09008 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47141 * 300.00000 * 1 2 3 33 33 H 1.09000 * 109.47507 * 239.99606 * 2 1 3 34 34 H 1.09007 * 109.47073 * 119.99862 * 2 1 3 35 35 H 1.09002 * 109.47266 * 60.00426 * 6 4 3 36 36 H 1.08998 * 109.47475 * 299.99707 * 6 4 3 37 37 H 0.96995 * 120.00283 * 179.97438 * 12 11 9 38 38 H 1.08998 * 110.48997 * 335.75708 * 22 20 18 39 39 H 1.09004 * 110.48840 * 98.40198 * 22 20 18 40 40 H 1.09001 * 115.55416 * 154.43996 * 26 25 23 41 41 H 1.09000 * 117.50049 * 0.02562 * 27 26 25 42 42 H 1.09003 * 117.49455 * 145.02692 * 27 26 25 43 43 H 1.08998 * 117.49815 * 214.98039 * 28 26 25 44 44 H 1.08998 * 117.49893 * 359.97438 * 28 26 25 45 45 H 1.08999 * 110.24533 * 223.98493 * 29 25 23 46 46 H 1.09000 * 110.31606 * 102.02836 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4487 2.8573 -0.0010 8 1 5.7807 2.2493 -0.8426 9 6 6.0244 4.2444 -0.1254 10 1 6.6591 4.4925 -0.9633 11 6 5.7407 5.1969 0.8303 12 7 4.9672 4.8950 1.8503 13 14 6.4548 6.9161 0.6765 14 1 7.2863 6.9987 -0.5511 15 1 5.3504 7.9054 0.5945 16 1 7.2961 7.2107 1.8642 17 8 5.9017 2.2547 1.2399 18 6 7.0462 1.5550 1.1954 19 8 7.6499 1.4499 0.1540 20 6 7.5820 0.9063 2.4456 21 1 6.8648 0.1920 2.8501 22 6 7.9599 1.9698 3.5025 23 6 9.2063 1.4146 4.1573 24 8 9.6632 1.7946 5.2145 25 7 9.7329 0.4391 3.3971 26 6 10.9390 -0.3176 3.7420 27 6 11.5229 -0.1166 5.1418 28 6 12.2390 0.4690 3.9222 29 6 8.9445 0.2297 2.1771 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.5851 3.4698 0.8888 36 1 3.5845 3.4693 -0.8912 37 1 4.7679 5.5649 2.5228 38 1 8.1742 2.9249 3.0231 39 1 7.1604 2.0805 4.2351 40 1 11.0100 -1.3137 3.3053 41 1 11.0094 0.5783 5.8063 42 1 11.9783 -0.9805 5.6259 43 1 13.1651 -0.0099 3.6044 44 1 12.1968 1.5493 3.7837 45 1 8.8070 -0.8362 1.9952 46 1 9.4361 0.6971 1.3239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870620555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:54 Heat of formation + Delta-G solvation = -175.863524 kcal Electronic energy + Delta-G solvation = -30467.702400 eV Core-core repulsion = 26130.873849 eV Total energy + Delta-G solvation = -4336.828551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.72288 -39.87774 -39.01677 -36.58322 -36.50576 -35.91335 -35.14692 -33.17727 -31.64187 -31.15318 -30.21404 -27.57136 -26.35999 -24.12528 -23.22105 -22.77199 -22.36435 -21.72940 -20.02749 -19.52788 -19.05904 -17.42733 -17.27606 -16.76227 -16.53551 -16.20962 -15.87723 -15.47578 -15.36805 -14.83783 -14.70362 -14.46383 -14.18716 -13.91293 -13.73592 -13.34964 -13.05213 -13.01536 -12.83689 -12.61954 -12.37952 -12.09331 -11.91054 -11.60063 -11.55645 -11.37855 -11.26443 -11.20466 -11.09574 -10.92875 -10.89224 -10.80314 -10.48945 -10.30187 -10.19655 -9.77940 -9.63243 -9.52130 -9.24765 -8.86071 -8.80673 -8.47215 -6.31995 -4.49687 2.62813 2.83993 2.94236 3.13347 3.22397 3.24829 3.27030 3.30774 3.73291 3.83347 4.21031 4.45771 4.55733 4.77507 4.92050 4.93873 4.98306 5.04436 5.10789 5.12022 5.24037 5.34372 5.42434 5.44573 5.62968 5.66494 5.75594 5.81243 5.85710 5.89993 5.94990 6.03731 6.08634 6.16013 6.23324 6.27893 6.52758 6.69045 6.82796 6.94239 7.12914 7.20620 7.60823 7.85194 7.89755 8.24838 8.43945 8.58040 8.97199 9.27439 10.70087 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.009479 B = 0.003781 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.044265 B = 7404.341127 C = 9469.360463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.458 3.542 5 O -0.519 6.519 6 C -0.103 4.103 7 C 0.231 3.769 8 H 0.047 0.953 9 C -0.547 4.547 10 H 0.071 0.929 11 C 0.083 3.917 12 N -0.858 5.858 13 Si 0.895 3.105 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.280 1.280 17 O -0.325 6.325 18 C 0.477 3.523 19 O -0.525 6.525 20 C -0.097 4.097 21 H 0.118 0.882 22 C -0.136 4.136 23 C 0.523 3.477 24 O -0.531 6.531 25 N -0.594 5.594 26 C 0.082 3.918 27 C -0.191 4.191 28 C -0.192 4.192 29 C 0.119 3.881 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.141 0.859 36 H 0.104 0.896 37 H 0.268 0.732 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 -9.928 1.751 10.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.303 3.697 5 O -0.407 6.407 6 C -0.140 4.140 7 C 0.178 3.822 8 H 0.065 0.935 9 C -0.584 4.584 10 H 0.089 0.911 11 C -0.124 4.124 12 N -0.494 5.494 13 Si 0.721 3.279 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.205 1.205 17 O -0.239 6.239 18 C 0.319 3.681 19 O -0.417 6.417 20 C -0.117 4.117 21 H 0.136 0.864 22 C -0.176 4.176 23 C 0.312 3.688 24 O -0.408 6.408 25 N -0.326 5.326 26 C -0.022 4.022 27 C -0.228 4.228 28 C -0.231 4.231 29 C -0.004 4.004 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.159 0.841 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.601 -10.014 2.145 10.259 hybrid contribution 0.340 0.681 -0.192 0.785 sum 0.941 -9.333 1.953 9.581 Atomic orbital electron populations 1.21781 0.93272 1.02347 1.03361 1.22863 0.94886 0.81748 1.02032 1.86582 1.26084 1.31017 1.84658 1.24914 0.79496 0.94290 0.71020 1.90578 1.60273 1.43706 1.46096 1.21889 0.96632 0.88149 1.07361 1.20093 0.88074 0.92619 0.81389 0.93504 1.21406 1.32435 0.94199 1.10376 0.91114 1.25095 0.93787 0.99093 0.94462 1.69860 1.34142 1.34526 1.10834 0.86481 0.79286 0.83459 0.78628 1.19403 1.20443 1.20537 1.86592 1.36227 1.59087 1.41980 1.22312 0.80952 0.76285 0.88540 1.90547 1.58925 1.59671 1.32530 1.21813 0.97240 0.98373 0.94310 0.86410 1.22275 0.96787 0.99873 0.98680 1.21029 0.85448 0.78645 0.83715 1.90575 1.66022 1.62199 1.22031 1.47692 1.26118 1.36552 1.22252 1.21489 0.83832 0.95637 1.01200 1.23757 1.03001 1.04262 0.91826 1.23360 0.95844 1.00851 1.03020 1.22024 0.89694 1.01571 0.87086 0.91688 0.90833 0.91577 0.91858 0.91738 0.84105 0.87779 0.92173 0.86628 0.86687 0.85357 0.85091 0.88666 0.88297 0.88655 0.89704 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.15 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -6.43 10.22 -39.27 -0.40 -6.83 16 4 C 0.46 9.30 7.84 36.01 0.28 9.58 16 5 O -0.52 -11.51 15.17 -23.94 -0.36 -11.88 16 6 C -0.10 -2.21 5.23 -27.88 -0.15 -2.35 16 7 C 0.23 5.57 1.64 -27.88 -0.05 5.53 16 8 H 0.05 1.19 6.97 -51.93 -0.36 0.83 16 9 C -0.55 -13.98 8.91 -34.44 -0.31 -14.28 16 10 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 11 C 0.08 2.06 5.25 -17.82 -0.09 1.96 16 12 N -0.86 -21.43 10.93 55.43 0.61 -20.83 16 13 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 O -0.32 -7.69 8.53 -44.43 -0.38 -8.07 16 18 C 0.48 10.22 7.15 36.00 0.26 10.48 16 19 O -0.53 -12.33 14.75 -18.76 -0.28 -12.60 16 20 C -0.10 -1.60 3.65 -90.15 -0.33 -1.93 16 21 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 22 C -0.14 -2.27 6.41 -26.71 -0.17 -2.44 16 23 C 0.52 8.70 7.88 -10.83 -0.09 8.62 16 24 O -0.53 -9.99 14.69 5.56 0.08 -9.91 16 25 N -0.59 -8.55 3.27 -164.82 -0.54 -9.09 16 26 C 0.08 0.99 6.88 -67.93 -0.47 0.52 16 27 C -0.19 -2.31 9.77 -26.69 -0.26 -2.57 16 28 C -0.19 -2.25 10.34 -26.69 -0.28 -2.53 16 29 C 0.12 1.69 6.69 -3.12 -0.02 1.67 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 34 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 35 H 0.14 3.23 6.22 -51.93 -0.32 2.91 16 36 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 37 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 38 H 0.12 2.14 7.89 -51.93 -0.41 1.73 16 39 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 40 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.13 1.97 5.31 -51.93 -0.28 1.69 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 1.49 7.01 -51.93 -0.36 1.12 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -30.46 387.89 -8.27 -38.73 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.77 Total: 7.87 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -1.05 Total: 12.16 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: 0.07 Total: -29.92 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -1.34 Total: -49.29 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.46 -8.27 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870620555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.135 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds