Wall clock time and date at job start Tue Mar 31 2020 22:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47040 * 2 1 4 4 C 1.34233 * 116.99742 * 180.02562 * 3 2 1 5 5 O 1.20818 * 120.00182 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99534 * 179.97438 * 4 3 2 7 7 C 1.53011 * 109.46883 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.46823 * 55.00197 * 7 6 4 9 9 C 1.50698 * 109.46943 * 175.00340 * 7 6 4 10 10 H 1.08004 * 119.99527 * 240.00419 * 9 7 6 11 11 C 1.37880 * 120.00423 * 60.00043 * 9 7 6 12 12 N 1.31517 * 119.99851 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00208 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47221 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47114 * 120.00158 * 13 11 9 16 16 H 1.48497 * 109.47114 * 240.00153 * 13 11 9 17 17 O 1.45201 * 109.47081 * 295.00332 * 7 6 4 18 18 C 1.34222 * 117.00137 * 149.99883 * 17 7 6 19 19 O 1.20833 * 119.99852 * 0.02562 * 18 17 7 20 20 C 1.50696 * 120.00432 * 179.71953 * 18 17 7 21 21 H 1.09003 * 110.85420 * 59.57640 * 20 18 17 22 22 C 1.54624 * 110.97154 * 295.78984 * 20 18 17 23 23 C 1.51345 * 104.16645 * 217.10350 * 22 20 18 24 24 O 1.21280 * 124.92534 * 196.22105 * 23 22 20 25 25 N 1.34418 * 110.12946 * 16.20436 * 23 22 20 26 26 C 1.46496 * 124.34958 * 180.42039 * 25 23 22 27 27 C 1.53000 * 117.49835 * 8.76206 * 26 25 23 28 28 C 1.53004 * 117.49623 * 300.10434 * 26 25 23 29 29 C 1.46764 * 111.29927 * 0.43344 * 25 23 22 30 30 H 1.08999 * 109.46842 * 60.00283 * 1 2 3 31 31 H 1.09008 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47141 * 300.00000 * 1 2 3 33 33 H 1.09000 * 109.47507 * 239.99606 * 2 1 3 34 34 H 1.09007 * 109.47073 * 119.99862 * 2 1 3 35 35 H 1.09002 * 109.47266 * 60.00426 * 6 4 3 36 36 H 1.08998 * 109.47475 * 299.99707 * 6 4 3 37 37 H 0.96995 * 120.00283 * 179.97438 * 12 11 9 38 38 H 1.08998 * 110.48997 * 335.75708 * 22 20 18 39 39 H 1.09004 * 110.48840 * 98.40198 * 22 20 18 40 40 H 1.09001 * 115.55416 * 154.43996 * 26 25 23 41 41 H 1.09000 * 117.50049 * 0.02562 * 27 26 25 42 42 H 1.09003 * 117.49455 * 145.02692 * 27 26 25 43 43 H 1.08998 * 117.49815 * 214.98039 * 28 26 25 44 44 H 1.08998 * 117.49893 * 359.97438 * 28 26 25 45 45 H 1.08999 * 110.24533 * 223.98493 * 29 25 23 46 46 H 1.09000 * 110.31606 * 102.02836 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4487 2.8573 -0.0010 8 1 5.7807 2.2493 -0.8426 9 6 6.0244 4.2444 -0.1254 10 1 6.6591 4.4925 -0.9633 11 6 5.7407 5.1969 0.8303 12 7 4.9672 4.8950 1.8503 13 14 6.4548 6.9161 0.6765 14 1 7.2863 6.9987 -0.5511 15 1 5.3504 7.9054 0.5945 16 1 7.2961 7.2107 1.8642 17 8 5.9017 2.2547 1.2399 18 6 7.0462 1.5550 1.1954 19 8 7.6499 1.4499 0.1540 20 6 7.5820 0.9063 2.4456 21 1 6.8648 0.1920 2.8501 22 6 7.9599 1.9698 3.5025 23 6 9.2063 1.4146 4.1573 24 8 9.6632 1.7946 5.2145 25 7 9.7329 0.4391 3.3971 26 6 10.9390 -0.3176 3.7420 27 6 11.5229 -0.1166 5.1418 28 6 12.2390 0.4690 3.9222 29 6 8.9445 0.2297 2.1771 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.5851 3.4698 0.8888 36 1 3.5845 3.4693 -0.8912 37 1 4.7679 5.5649 2.5228 38 1 8.1742 2.9249 3.0231 39 1 7.1604 2.0805 4.2351 40 1 11.0100 -1.3137 3.3053 41 1 11.0094 0.5783 5.8063 42 1 11.9783 -0.9805 5.6259 43 1 13.1651 -0.0099 3.6044 44 1 12.1968 1.5493 3.7837 45 1 8.8070 -0.8362 1.9952 46 1 9.4361 0.6971 1.3239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870620555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:53 Heat of formation + Delta-G solvation = -191.692283 kcal Electronic energy + Delta-G solvation = -30468.388787 eV Core-core repulsion = 26130.873849 eV Total energy + Delta-G solvation = -4337.514938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.06645 -41.43668 -40.64919 -38.04860 -37.70943 -37.33332 -36.79478 -35.06251 -32.92219 -32.44741 -31.78338 -28.89608 -28.17717 -25.61527 -24.47688 -23.89193 -23.36547 -23.15676 -21.59753 -21.19729 -20.29457 -19.05232 -18.87899 -18.26846 -17.89843 -17.63189 -17.30578 -17.13457 -16.87279 -16.46973 -16.23196 -15.90391 -15.51088 -15.21408 -14.89630 -14.80487 -14.37446 -14.34659 -14.10435 -13.94605 -13.76693 -13.64254 -13.39447 -12.95984 -12.86118 -12.80206 -12.63915 -12.60728 -12.56586 -12.43829 -12.43047 -12.10401 -11.98354 -11.52950 -11.45062 -11.40372 -11.39183 -11.22974 -10.78055 -10.70063 -10.63476 -9.61734 -8.23655 -6.48350 1.30899 1.31605 1.38151 1.44776 1.51579 1.54748 1.67107 1.84519 2.18204 2.37074 2.86165 3.06173 3.17047 3.33502 3.64979 3.82208 3.87898 3.96336 3.99060 4.04039 4.10275 4.15059 4.21598 4.38110 4.38792 4.50104 4.50831 4.60929 4.68017 4.74192 4.76597 4.83964 4.89866 4.95676 5.00102 5.06882 5.16365 5.25532 5.33374 5.52830 5.60817 5.66088 5.89868 5.95636 6.11064 6.58958 6.88350 6.96926 7.16799 7.33132 8.77974 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.009479 B = 0.003781 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.044265 B = 7404.341127 C = 9469.360463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.365 6.365 4 C 0.466 3.534 5 O -0.541 6.541 6 C -0.097 4.097 7 C 0.232 3.768 8 H 0.024 0.976 9 C -0.572 4.572 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.870 5.870 13 Si 0.948 3.052 14 H -0.275 1.275 15 H -0.265 1.265 16 H -0.282 1.282 17 O -0.337 6.337 18 C 0.468 3.532 19 O -0.551 6.551 20 C -0.088 4.088 21 H 0.145 0.855 22 C -0.133 4.133 23 C 0.521 3.479 24 O -0.557 6.557 25 N -0.587 5.587 26 C 0.073 3.927 27 C -0.192 4.192 28 C -0.191 4.191 29 C 0.126 3.874 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.272 0.728 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.167 0.833 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.067 0.933 45 H 0.122 0.878 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 -11.574 2.125 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.282 6.282 4 C 0.311 3.689 5 O -0.431 6.431 6 C -0.134 4.134 7 C 0.179 3.821 8 H 0.042 0.958 9 C -0.609 4.609 10 H 0.072 0.928 11 C -0.152 4.152 12 N -0.505 5.505 13 Si 0.773 3.227 14 H -0.200 1.200 15 H -0.190 1.190 16 H -0.208 1.208 17 O -0.251 6.251 18 C 0.312 3.688 19 O -0.444 6.444 20 C -0.108 4.108 21 H 0.162 0.838 22 C -0.173 4.173 23 C 0.309 3.691 24 O -0.436 6.436 25 N -0.318 5.318 26 C -0.029 4.029 27 C -0.229 4.229 28 C -0.230 4.230 29 C 0.004 3.996 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.184 0.816 41 H 0.117 0.883 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.086 0.914 45 H 0.140 0.860 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.285 -11.677 2.511 11.947 hybrid contribution 0.412 1.139 -0.326 1.254 sum 0.697 -10.538 2.184 10.784 Atomic orbital electron populations 1.21811 0.90074 1.04400 1.03667 1.23288 0.97349 0.79650 1.02209 1.86551 1.24132 1.33588 1.83941 1.24485 0.80401 0.93359 0.70616 1.90560 1.61087 1.44170 1.47283 1.21671 0.95083 0.89272 1.07376 1.19965 0.89624 0.91580 0.80963 0.95813 1.21460 1.33302 0.95493 1.10629 0.92767 1.25572 0.93919 1.01621 0.94039 1.69921 1.34206 1.35425 1.10943 0.85670 0.78833 0.80233 0.77971 1.19956 1.18987 1.20810 1.86576 1.37363 1.59639 1.41561 1.23223 0.80023 0.75646 0.89938 1.90523 1.59274 1.60495 1.34069 1.21859 0.98907 0.98401 0.91627 0.83772 1.22191 0.97466 0.98951 0.98736 1.20930 0.85416 0.79122 0.83593 1.90580 1.66699 1.63156 1.23212 1.47750 1.26656 1.35846 1.21520 1.22000 0.82626 0.96834 1.01483 1.23704 1.02990 1.04702 0.91482 1.23396 0.97078 0.99514 1.02970 1.22020 0.87997 1.03261 0.86317 0.91202 0.87860 0.91448 0.91557 0.91804 0.85334 0.86469 0.91784 0.89085 0.86139 0.81588 0.88286 0.85625 0.85258 0.91414 0.86042 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 10.29 71.98 0.74 -1.81 16 2 C 0.05 1.28 6.19 71.98 0.45 1.72 16 3 O -0.36 -12.56 10.22 -51.44 -0.53 -13.09 16 4 C 0.47 19.01 7.84 71.24 0.56 19.56 16 5 O -0.54 -24.18 15.17 26.95 0.41 -23.78 16 6 C -0.10 -4.22 5.23 29.85 0.16 -4.07 16 7 C 0.23 11.56 1.64 29.85 0.05 11.61 16 8 H 0.02 1.27 6.97 -2.39 -0.02 1.25 16 9 C -0.57 -30.16 8.91 25.60 0.23 -29.93 16 10 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 11 C 0.05 2.75 5.25 84.65 0.44 3.20 16 12 N -0.87 -43.83 10.93 21.45 0.23 -43.59 16 13 Si 0.95 40.58 29.54 68.60 2.03 42.61 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 17 O -0.34 -16.37 8.53 -46.37 -0.40 -16.77 16 18 C 0.47 20.43 7.15 71.23 0.51 20.94 16 19 O -0.55 -26.56 14.75 21.94 0.32 -26.23 16 20 C -0.09 -2.85 3.65 -10.49 -0.04 -2.88 16 21 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 22 C -0.13 -4.50 6.41 30.61 0.20 -4.30 16 23 C 0.52 17.30 7.88 87.92 0.69 17.99 16 24 O -0.56 -21.28 14.69 -3.03 -0.04 -21.32 16 25 N -0.59 -16.04 3.27 -793.97 -2.60 -18.64 16 26 C 0.07 1.57 6.88 44.99 0.31 1.88 16 27 C -0.19 -4.26 9.77 30.62 0.30 -3.96 16 28 C -0.19 -4.14 10.34 30.62 0.32 -3.82 16 29 C 0.13 3.40 6.69 86.83 0.58 3.98 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 34 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.13 6.00 6.22 -2.39 -0.01 5.99 16 36 H 0.12 4.68 8.14 -2.39 -0.02 4.66 16 37 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 38 H 0.09 3.53 7.89 -2.39 -0.02 3.51 16 39 H 0.12 3.86 8.14 -2.38 -0.02 3.84 16 40 H 0.17 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.10 2.95 5.31 -2.39 -0.01 2.94 16 42 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.08 2.44 7.01 -2.39 -0.02 2.42 16 Total: -1.00 -68.15 387.89 5.91 -62.23 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 1.00 Total: 28.47 kcal Atomic # 6 Polarization: 24.62 SS G_CDS: 5.49 Total: 30.11 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -2.36 Total: -62.23 kcal Atomic # 8 Polarization: -100.95 SS G_CDS: -0.23 Total: -101.19 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -68.15 5.91 -62.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870620555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.460 kcal (2) G-P(sol) polarization free energy of solvation -68.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds