Wall clock time and date at job start Tue Mar 31 2020 22:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34968 * 125.98376 * 2 1 4 4 C 1.35233 * 107.85961 * 179.83696 * 3 2 1 5 5 C 1.40386 * 107.87059 * 0.42285 * 4 3 2 6 6 N 1.40335 * 125.96808 * 179.69978 * 5 4 3 7 7 C 1.38556 * 126.40507 * 313.14762 * 6 5 4 8 8 C 1.38688 * 133.91284 * 359.97438 * 7 6 5 9 9 C 1.37941 * 119.84421 * 180.02562 * 8 7 6 10 10 C 1.38721 * 120.43889 * 0.02562 * 9 8 7 11 11 C 1.37673 * 120.51113 * 359.59480 * 10 9 8 12 12 C 1.39733 * 119.77224 * 0.64308 * 11 10 9 13 13 N 1.35849 * 133.39404 * 179.24435 * 12 11 10 14 14 C 1.30862 * 109.67064 * 179.97438 * 13 12 11 15 15 N 1.38474 * 125.06899 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99923 * 5.21254 * 15 14 13 17 17 O 1.21270 * 119.99979 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99975 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.47140 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.47062 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00070 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99690 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00007 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99591 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47336 * 90.00398 * 24 22 20 26 26 H 1.48503 * 109.46876 * 210.00197 * 24 22 20 27 27 H 1.48497 * 109.47316 * 329.99633 * 24 22 20 28 28 N 1.31205 * 108.05799 * 359.73818 * 5 4 3 29 29 H 1.09006 * 109.47017 * 269.71983 * 1 2 3 30 30 H 1.09005 * 109.46787 * 29.71326 * 1 2 3 31 31 H 1.08998 * 109.47612 * 149.71381 * 1 2 3 32 32 H 1.08006 * 126.06881 * 0.02562 * 3 2 1 33 33 H 1.08002 * 126.06698 * 180.12645 * 4 3 2 34 34 H 1.07996 * 120.07212 * 359.97438 * 8 7 6 35 35 H 1.08000 * 119.77800 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.74442 * 180.02562 * 10 9 8 37 37 H 1.07995 * 120.11222 * 179.88050 * 11 10 9 38 38 H 0.97000 * 119.99859 * 185.21683 * 15 14 13 39 39 H 1.09002 * 109.47230 * 300.00122 * 18 16 15 40 40 H 1.08996 * 109.47632 * 59.99914 * 18 16 15 41 41 H 1.08998 * 109.47179 * 299.99625 * 19 18 16 42 42 H 1.09001 * 109.47533 * 60.00155 * 19 18 16 43 43 H 0.97002 * 120.00090 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2580 1.0921 0.0000 4 6 3.5432 0.6715 0.0037 5 6 3.5370 -0.7324 -0.0039 6 7 4.6692 -1.5616 -0.0090 7 6 5.7827 -1.4279 -0.8227 8 6 6.1461 -0.5307 -1.8158 9 6 7.3587 -0.6718 -2.4582 10 6 8.2181 -1.7062 -2.1179 11 6 7.8772 -2.6015 -1.1291 12 6 6.6504 -2.4757 -0.4720 13 7 6.0396 -3.1897 0.5091 14 6 4.8768 -2.6559 0.7836 15 7 3.9884 -3.1295 1.7344 16 6 4.3403 -4.1568 2.5328 17 8 5.4350 -4.6660 2.4189 18 6 3.3733 -4.6726 3.5672 19 6 4.0155 -5.8311 4.3328 20 6 3.0487 -6.3465 5.3677 21 1 2.0737 -5.8934 5.4688 22 6 3.4088 -7.3974 6.1845 23 7 4.5959 -7.9495 6.0610 24 14 2.2102 -8.0367 7.4668 25 1 1.3747 -9.1104 6.8716 26 1 2.9662 -8.5813 8.6231 27 1 1.3369 -6.9265 7.9251 28 7 2.2878 -1.1336 -0.0061 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 0.8926 -0.5094 31 1 -0.3634 -0.8874 -0.5182 32 1 1.9252 2.1196 0.0004 33 1 4.4191 1.3034 0.0065 34 1 5.4810 0.2760 -2.0862 35 1 7.6405 0.0272 -3.2317 36 1 9.1649 -1.8059 -2.6277 37 1 8.5503 -3.4055 -0.8706 38 1 3.1129 -2.7220 1.8257 39 1 3.1242 -3.8715 4.2631 40 1 2.4657 -5.0210 3.0744 41 1 4.2650 -6.6324 3.6372 42 1 4.9230 -5.4823 4.8258 43 1 4.8491 -8.6890 6.6354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871070452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:58 Heat of formation + Delta-G solvation = 140.566581 kcal Electronic energy + Delta-G solvation = -28095.130130 eV Core-core repulsion = 24143.917439 eV Total energy + Delta-G solvation = -3951.212690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.55943 -41.43147 -39.35064 -37.33856 -34.87281 -34.28463 -33.48507 -32.50878 -31.06922 -30.88894 -29.99395 -28.77047 -26.92539 -25.97302 -23.41991 -23.11334 -22.42130 -21.63503 -21.27460 -19.97732 -19.67137 -18.21173 -17.74927 -16.88683 -16.69369 -16.38679 -16.18557 -15.75800 -15.47317 -14.76798 -14.61765 -14.51335 -14.39452 -14.26675 -13.95078 -13.71260 -13.38750 -13.22549 -13.02064 -12.67943 -12.20935 -12.07021 -11.95117 -11.56296 -11.44463 -11.20953 -10.95974 -10.89999 -10.61514 -10.03625 -9.99932 -9.98519 -9.77216 -9.63190 -9.25234 -9.16815 -9.07894 -8.32655 -8.24023 -7.77261 -5.95853 -4.00826 0.86769 1.16601 1.41641 1.49545 2.10305 2.31225 2.65920 3.14932 3.33674 3.36782 3.39769 3.42124 3.89778 4.02363 4.17212 4.34096 4.47031 4.66068 4.79701 4.82506 4.87760 4.94607 5.05389 5.09806 5.22120 5.28046 5.39047 5.39871 5.48394 5.63672 5.72979 6.02924 6.09431 6.11901 6.13205 6.33478 6.38918 6.46055 6.52549 6.72012 6.83161 7.02758 7.19223 7.31274 7.73424 7.83405 8.05508 8.07792 8.35370 8.58923 9.06763 9.62599 11.15027 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.002930 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.996709 B = 9553.315407 C =11960.196273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.358 5.358 3 C 0.075 3.925 4 C -0.262 4.262 5 C 0.288 3.712 6 N -0.435 5.435 7 C 0.051 3.949 8 C -0.099 4.099 9 C -0.115 4.115 10 C -0.122 4.122 11 C -0.070 4.070 12 C 0.077 3.923 13 N -0.469 5.469 14 C 0.533 3.467 15 N -0.646 5.646 16 C 0.505 3.495 17 O -0.456 6.456 18 C -0.121 4.121 19 C 0.036 3.964 20 C -0.529 4.529 21 H 0.056 0.944 22 C 0.059 3.941 23 N -0.887 5.887 24 Si 0.894 3.106 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 N -0.293 5.293 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.186 0.814 33 H 0.157 0.843 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.417 0.583 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 24.492 -18.435 31.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.141 5.141 3 C -0.071 4.071 4 C -0.293 4.293 5 C 0.034 3.966 6 N -0.132 5.132 7 C -0.054 4.054 8 C -0.120 4.120 9 C -0.135 4.135 10 C -0.142 4.142 11 C -0.090 4.090 12 C -0.041 4.041 13 N -0.195 5.195 14 C 0.180 3.820 15 N -0.300 5.300 16 C 0.293 3.707 17 O -0.321 6.321 18 C -0.161 4.161 19 C -0.002 4.002 20 C -0.567 4.567 21 H 0.075 0.925 22 C -0.143 4.143 23 N -0.526 5.526 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 N -0.120 5.120 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.203 0.797 33 H 0.175 0.825 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.254 0.746 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.955 22.205 -17.947 28.977 hybrid contribution -1.187 1.347 0.385 1.836 sum -6.141 23.551 -17.562 30.013 Atomic orbital electron populations 1.22034 0.72789 1.05076 1.04238 1.48285 1.06827 1.02775 1.56248 1.22559 0.90083 0.93928 1.00555 1.21365 0.98086 0.92594 1.17233 1.18874 0.85763 0.89617 1.02323 1.41684 1.13195 1.24668 1.33651 1.18536 0.87631 1.01628 0.97646 1.19893 0.97814 0.98621 0.95671 1.20794 0.93444 0.98955 1.00291 1.20882 1.00083 0.95319 0.97915 1.20298 0.93576 0.99867 0.95246 1.19072 0.95702 0.93046 0.96256 1.71267 1.03946 1.26843 1.17461 1.20066 0.90143 0.83274 0.88518 1.43536 1.17021 1.36074 1.33401 1.22059 0.89992 0.77506 0.81178 1.90818 1.21790 1.53553 1.65944 1.21933 0.97444 1.01863 0.94851 1.18959 0.96027 0.90825 0.94341 1.21164 1.00830 1.16684 1.18006 0.92538 1.25021 0.95229 0.96613 0.97468 1.69996 1.19363 1.24057 1.39135 0.86578 0.80978 0.79091 0.81208 1.20658 1.21193 1.19920 1.77482 0.99851 1.08145 1.26518 0.89885 0.88805 0.88766 0.79657 0.82534 0.86132 0.85374 0.85287 0.84885 0.74585 0.89721 0.89589 0.95439 0.95480 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.36 11.47 59.85 0.69 1.05 16 2 N -0.36 -2.86 4.01 -68.18 -0.27 -3.13 16 3 C 0.08 0.49 11.48 -17.24 -0.20 0.29 16 4 C -0.26 -2.45 10.64 -39.84 -0.42 -2.87 16 5 C 0.29 3.72 7.16 -154.23 -1.10 2.62 16 6 N -0.44 -6.78 3.05 -60.42 -0.18 -6.96 16 7 C 0.05 0.76 6.78 -83.81 -0.57 0.19 16 8 C -0.10 -1.12 10.00 -39.52 -0.40 -1.52 16 9 C -0.12 -1.11 10.03 -39.51 -0.40 -1.51 16 10 C -0.12 -1.27 10.01 -39.61 -0.40 -1.67 16 11 C -0.07 -0.97 10.10 -39.23 -0.40 -1.36 16 12 C 0.08 1.32 7.22 -84.68 -0.61 0.71 16 13 N -0.47 -9.66 9.38 -11.36 -0.11 -9.77 16 14 C 0.53 9.91 8.34 -319.11 -2.66 7.25 16 15 N -0.65 -11.44 5.37 -12.54 -0.07 -11.50 16 16 C 0.51 10.64 7.79 -10.99 -0.09 10.56 16 17 O -0.46 -11.61 14.62 5.57 0.08 -11.53 16 18 C -0.12 -2.50 5.64 -27.89 -0.16 -2.65 16 19 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 20 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 24 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 28 N -0.29 -3.61 11.91 31.47 0.37 -3.23 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.19 0.35 8.06 -52.48 -0.42 -0.08 16 33 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.12 1.10 7.96 -52.49 -0.42 0.68 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.42 6.18 7.78 -40.82 -0.32 5.86 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -39.41 376.94 -11.36 -50.77 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.35 Total: 1.51 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -7.24 Total: -1.75 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.48 Total: -61.38 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.41 -11.36 -50.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871070452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.333 kcal (2) G-P(sol) polarization free energy of solvation -39.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds