Wall clock time and date at job start Tue Mar 31 2020 22:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34968 * 125.98376 * 2 1 4 4 C 1.35233 * 107.85961 * 179.83696 * 3 2 1 5 5 C 1.40386 * 107.87059 * 0.42285 * 4 3 2 6 6 N 1.40335 * 125.96808 * 179.69978 * 5 4 3 7 7 C 1.38556 * 126.40507 * 313.14762 * 6 5 4 8 8 C 1.38688 * 133.91284 * 359.97438 * 7 6 5 9 9 C 1.37941 * 119.84421 * 180.02562 * 8 7 6 10 10 C 1.38721 * 120.43889 * 0.02562 * 9 8 7 11 11 C 1.37673 * 120.51113 * 359.59480 * 10 9 8 12 12 C 1.39733 * 119.77224 * 0.64308 * 11 10 9 13 13 N 1.35849 * 133.39404 * 179.24435 * 12 11 10 14 14 C 1.30862 * 109.67064 * 179.97438 * 13 12 11 15 15 N 1.38474 * 125.06899 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99923 * 5.21254 * 15 14 13 17 17 O 1.21270 * 119.99979 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99975 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.47140 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.47062 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00070 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99690 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00007 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99591 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47336 * 90.00398 * 24 22 20 26 26 H 1.48503 * 109.46876 * 210.00197 * 24 22 20 27 27 H 1.48497 * 109.47316 * 329.99633 * 24 22 20 28 28 N 1.31205 * 108.05799 * 359.73818 * 5 4 3 29 29 H 1.09006 * 109.47017 * 269.71983 * 1 2 3 30 30 H 1.09005 * 109.46787 * 29.71326 * 1 2 3 31 31 H 1.08998 * 109.47612 * 149.71381 * 1 2 3 32 32 H 1.08006 * 126.06881 * 0.02562 * 3 2 1 33 33 H 1.08002 * 126.06698 * 180.12645 * 4 3 2 34 34 H 1.07996 * 120.07212 * 359.97438 * 8 7 6 35 35 H 1.08000 * 119.77800 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.74442 * 180.02562 * 10 9 8 37 37 H 1.07995 * 120.11222 * 179.88050 * 11 10 9 38 38 H 0.97000 * 119.99859 * 185.21683 * 15 14 13 39 39 H 1.09002 * 109.47230 * 300.00122 * 18 16 15 40 40 H 1.08996 * 109.47632 * 59.99914 * 18 16 15 41 41 H 1.08998 * 109.47179 * 299.99625 * 19 18 16 42 42 H 1.09001 * 109.47533 * 60.00155 * 19 18 16 43 43 H 0.97002 * 120.00090 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2580 1.0921 0.0000 4 6 3.5432 0.6715 0.0037 5 6 3.5370 -0.7324 -0.0039 6 7 4.6692 -1.5616 -0.0090 7 6 5.7827 -1.4279 -0.8227 8 6 6.1461 -0.5307 -1.8158 9 6 7.3587 -0.6718 -2.4582 10 6 8.2181 -1.7062 -2.1179 11 6 7.8772 -2.6015 -1.1291 12 6 6.6504 -2.4757 -0.4720 13 7 6.0396 -3.1897 0.5091 14 6 4.8768 -2.6559 0.7836 15 7 3.9884 -3.1295 1.7344 16 6 4.3403 -4.1568 2.5328 17 8 5.4350 -4.6660 2.4189 18 6 3.3733 -4.6726 3.5672 19 6 4.0155 -5.8311 4.3328 20 6 3.0487 -6.3465 5.3677 21 1 2.0737 -5.8934 5.4688 22 6 3.4088 -7.3974 6.1845 23 7 4.5959 -7.9495 6.0610 24 14 2.2102 -8.0367 7.4668 25 1 1.3747 -9.1104 6.8716 26 1 2.9662 -8.5813 8.6231 27 1 1.3369 -6.9265 7.9251 28 7 2.2878 -1.1336 -0.0061 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 0.8926 -0.5094 31 1 -0.3634 -0.8874 -0.5182 32 1 1.9252 2.1196 0.0004 33 1 4.4191 1.3034 0.0065 34 1 5.4810 0.2760 -2.0862 35 1 7.6405 0.0272 -3.2317 36 1 9.1649 -1.8059 -2.6277 37 1 8.5503 -3.4055 -0.8706 38 1 3.1129 -2.7220 1.8257 39 1 3.1242 -3.8715 4.2631 40 1 2.4657 -5.0210 3.0744 41 1 4.2650 -6.6324 3.6372 42 1 4.9230 -5.4823 4.8258 43 1 4.8491 -8.6890 6.6354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871070452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:57 Heat of formation + Delta-G solvation = 116.181230 kcal Electronic energy + Delta-G solvation = -28096.187558 eV Core-core repulsion = 24143.917439 eV Total energy + Delta-G solvation = -3952.270119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.61971 -42.18345 -40.95077 -38.39463 -35.91246 -35.69192 -35.58239 -33.27580 -33.07338 -31.61210 -30.88215 -29.94796 -27.95972 -27.45644 -25.01051 -24.02674 -23.42079 -23.06225 -22.13676 -21.34270 -20.91080 -19.24066 -18.93865 -18.48463 -17.85345 -17.49427 -17.22897 -17.10894 -16.59047 -16.47630 -16.16037 -15.61328 -15.40708 -15.09362 -14.96005 -14.73834 -14.51029 -14.32447 -14.24892 -13.73567 -13.36019 -13.33117 -13.10088 -12.90400 -12.82560 -12.50675 -12.50099 -12.37644 -12.00033 -11.82420 -11.71139 -11.40221 -11.34557 -11.24573 -10.78187 -10.58166 -10.51335 -9.86475 -9.19237 -8.95875 -8.18984 -6.33786 -0.20329 0.30800 0.54276 0.70525 1.20807 1.38759 1.41877 1.44995 1.49019 1.55918 1.97340 2.06524 2.42092 2.86822 3.09916 3.14164 3.50207 3.60014 3.85054 3.93642 4.10175 4.16705 4.30475 4.36534 4.41934 4.42047 4.45937 4.49942 4.56457 4.64518 4.73029 4.76023 4.83095 4.92500 5.03600 5.19101 5.36769 5.46901 5.51559 5.54235 5.55901 5.77127 5.81640 5.94139 6.00563 6.09399 6.13419 6.33221 6.77129 6.83751 7.04794 7.36367 8.93945 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.002930 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.996709 B = 9553.315407 C =11960.196273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.351 5.351 3 C 0.103 3.897 4 C -0.278 4.278 5 C 0.253 3.747 6 N -0.428 5.428 7 C 0.043 3.957 8 C -0.100 4.100 9 C -0.094 4.094 10 C -0.107 4.107 11 C -0.094 4.094 12 C 0.026 3.974 13 N -0.522 5.522 14 C 0.503 3.497 15 N -0.629 5.629 16 C 0.511 3.489 17 O -0.514 6.514 18 C -0.106 4.106 19 C 0.042 3.958 20 C -0.543 4.543 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.937 5.937 24 Si 0.977 3.023 25 H -0.272 1.272 26 H -0.286 1.286 27 H -0.253 1.253 28 N -0.335 5.335 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.240 0.760 33 H 0.167 0.833 34 H 0.148 0.852 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.125 0.875 38 H 0.430 0.570 39 H 0.115 0.885 40 H 0.114 0.886 41 H -0.015 1.015 42 H -0.014 1.014 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.903 28.631 -19.951 35.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.134 5.134 3 C -0.045 4.045 4 C -0.309 4.309 5 C 0.002 3.998 6 N -0.123 5.123 7 C -0.062 4.062 8 C -0.120 4.120 9 C -0.113 4.113 10 C -0.127 4.127 11 C -0.114 4.114 12 C -0.091 4.091 13 N -0.249 5.249 14 C 0.148 3.852 15 N -0.284 5.284 16 C 0.300 3.700 17 O -0.383 6.383 18 C -0.146 4.146 19 C 0.005 3.995 20 C -0.581 4.581 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.577 5.577 24 Si 0.800 3.200 25 H -0.197 1.197 26 H -0.212 1.212 27 H -0.177 1.177 28 N -0.164 5.164 29 H 0.112 0.888 30 H 0.152 0.848 31 H 0.105 0.895 32 H 0.256 0.744 33 H 0.185 0.815 34 H 0.166 0.834 35 H 0.194 0.806 36 H 0.184 0.816 37 H 0.143 0.857 38 H 0.270 0.730 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.003 0.997 42 H 0.004 0.996 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.708 26.408 -19.507 33.724 hybrid contribution -0.327 0.228 0.665 0.775 sum -8.035 26.636 -18.842 33.601 Atomic orbital electron populations 1.22452 0.70356 1.06728 1.05488 1.48707 1.08074 1.02157 1.54501 1.23336 0.88623 0.95445 0.97089 1.21614 1.00008 0.90891 1.18395 1.19195 0.85263 0.90673 1.04694 1.41617 1.14230 1.23825 1.32649 1.18979 0.87109 1.01822 0.98333 1.20340 0.98944 0.98368 0.94389 1.21403 0.91827 0.98416 0.99646 1.21344 1.01426 0.93928 0.96001 1.20559 0.92887 1.01222 0.96718 1.19542 0.97711 0.94609 0.97266 1.71065 1.05540 1.29082 1.19216 1.19922 0.90256 0.85120 0.89863 1.42956 1.17478 1.35145 1.32796 1.21986 0.89084 0.77686 0.81277 1.90796 1.24023 1.55736 1.67783 1.21693 0.97395 1.00452 0.95014 1.18722 0.95061 0.91858 0.93902 1.21654 1.01677 1.16823 1.17897 0.90212 1.26171 0.97217 0.96928 1.00196 1.70190 1.22054 1.24858 1.40605 0.85276 0.78248 0.78884 0.77552 1.19709 1.21216 1.17690 1.77371 1.00242 1.10889 1.27882 0.88775 0.84809 0.89518 0.74365 0.81542 0.83397 0.80616 0.81589 0.85658 0.73020 0.86701 0.86804 0.99683 0.99567 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 11.47 127.77 1.47 1.81 16 2 N -0.35 -4.63 4.01 -369.61 -1.48 -6.12 16 3 C 0.10 0.91 11.48 83.52 0.96 1.87 16 4 C -0.28 -4.59 10.64 22.10 0.24 -4.36 16 5 C 0.25 6.48 7.16 133.26 0.95 7.43 16 6 N -0.43 -13.91 3.05 -345.05 -1.05 -14.96 16 7 C 0.04 1.32 6.78 38.74 0.26 1.58 16 8 C -0.10 -2.05 10.00 22.31 0.22 -1.83 16 9 C -0.09 -1.46 10.03 22.31 0.22 -1.24 16 10 C -0.11 -2.02 10.01 22.25 0.22 -1.79 16 11 C -0.09 -2.73 10.10 22.50 0.23 -2.50 16 12 C 0.03 0.94 7.22 39.43 0.28 1.23 16 13 N -0.52 -23.69 9.38 -189.84 -1.78 -25.47 16 14 C 0.50 20.19 8.34 260.20 2.17 22.36 16 15 N -0.63 -23.79 5.37 -311.98 -1.67 -25.47 16 16 C 0.51 23.16 7.79 87.66 0.68 23.84 16 17 O -0.51 -28.83 14.62 -3.00 -0.04 -28.87 16 18 C -0.11 -4.52 5.64 29.85 0.17 -4.35 16 19 C 0.04 2.43 4.26 29.85 0.13 2.56 16 20 C -0.54 -31.35 9.11 25.60 0.23 -31.11 16 21 H 0.08 4.14 7.74 -2.91 -0.02 4.12 16 22 C -0.01 -0.45 5.46 84.66 0.46 0.02 16 23 N -0.94 -60.74 13.29 21.45 0.28 -60.46 16 24 Si 0.98 44.87 29.54 68.60 2.03 46.90 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 28 N -0.34 -8.07 11.91 -54.36 -0.65 -8.71 16 29 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.13 -0.52 8.14 -2.38 -0.02 -0.54 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.24 -0.64 8.06 -2.91 -0.02 -0.67 16 33 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.15 2.20 7.96 -2.91 -0.02 2.18 16 35 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.43 13.30 7.78 -92.71 -0.72 12.58 16 39 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 40 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 41 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 42 H -0.01 -0.92 8.10 -2.39 -0.02 -0.93 16 43 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -97.39 376.94 4.86 -92.53 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.33 Total: 15.11 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 8.90 Total: 15.52 kcal Atomic # 7 Polarization: -134.84 SS G_CDS: -6.35 Total: -141.19 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.04 Total: -28.87 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -97.39 4.86 -92.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871070452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.707 kcal (2) G-P(sol) polarization free energy of solvation -97.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds