Wall clock time and date at job start Tue Mar 31 2020 22:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 116.99991 * 2 1 4 4 O 1.20820 * 120.00342 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99865 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47118 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.46942 * 180.02562 * 6 5 3 8 8 C 1.36938 * 119.99850 * 84.37916 * 7 6 5 9 9 H 1.07993 * 120.00187 * 325.89393 * 8 7 6 10 10 C 1.38817 * 119.99619 * 145.89399 * 8 7 6 11 11 N 1.31614 * 120.00275 * 336.93952 * 10 8 7 12 12 Si 1.86803 * 119.99691 * 156.94301 * 10 8 7 13 13 H 1.48489 * 109.47427 * 59.99458 * 12 10 8 14 14 H 1.48494 * 109.46893 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46705 * 299.99364 * 12 10 8 16 16 C 1.46500 * 119.99942 * 264.37628 * 7 6 5 17 17 C 1.50703 * 109.46819 * 90.00537 * 16 7 6 18 18 C 1.38232 * 119.90391 * 269.72622 * 17 16 7 19 19 C 1.38668 * 120.08575 * 179.72912 * 18 17 16 20 20 O 1.36001 * 120.04959 * 180.29235 * 19 18 17 21 21 C 1.42901 * 116.99470 * 0.27351 * 20 19 18 22 22 C 1.38986 * 119.91193 * 0.56786 * 19 18 17 23 23 O 1.36088 * 120.09374 * 179.68775 * 22 19 18 24 24 C 1.38984 * 119.81416 * 359.70362 * 22 19 18 25 25 O 1.36002 * 120.03846 * 179.97438 * 24 22 19 26 26 C 1.42901 * 116.99611 * 180.02562 * 25 24 22 27 27 C 1.38222 * 119.91367 * 89.99950 * 17 16 7 28 28 H 1.09002 * 109.46668 * 299.99943 * 1 2 3 29 29 H 1.09007 * 109.46903 * 59.99695 * 1 2 3 30 30 H 1.08994 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46614 * 60.00188 * 5 3 2 32 32 H 1.08995 * 109.47562 * 300.00419 * 5 3 2 33 33 H 1.08994 * 109.46795 * 59.99979 * 6 5 3 34 34 H 1.09000 * 109.47002 * 300.00143 * 6 5 3 35 35 H 0.97001 * 120.00186 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.47090 * 210.00329 * 16 7 6 37 37 H 1.08991 * 109.47135 * 330.00597 * 16 7 6 38 38 H 1.07997 * 119.95935 * 359.97438 * 18 17 16 39 39 H 1.09007 * 109.47088 * 60.00090 * 21 20 19 40 40 H 1.08996 * 109.46737 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47557 * 299.99791 * 21 20 19 42 42 H 0.96695 * 113.99432 * 270.01858 * 23 22 19 43 43 H 1.08996 * 109.46987 * 60.00753 * 26 25 24 44 44 H 1.09000 * 109.46968 * 179.97438 * 26 25 24 45 45 H 1.08994 * 109.47762 * 300.00314 * 26 25 24 46 46 H 1.08004 * 119.95513 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1530 2.7389 -1.1792 9 1 5.7845 2.1134 -1.9788 10 6 7.3259 3.4620 -1.3479 11 7 7.5484 4.5346 -0.6184 12 14 8.5883 2.9127 -2.6105 13 1 7.9701 2.9117 -3.9606 14 1 9.7427 3.8466 -2.5947 15 1 9.0560 1.5428 -2.2791 16 6 6.1883 2.9806 1.2637 17 6 6.5109 1.6240 1.8352 18 6 5.6217 1.0102 2.6974 19 6 5.9122 -0.2405 3.2211 20 8 5.0340 -0.8464 4.0645 21 6 3.8287 -0.1393 4.3634 22 6 7.1046 -0.8717 2.8873 23 8 7.3963 -2.0964 3.4042 24 6 7.9985 -0.2486 2.0246 25 8 9.1669 -0.8618 1.6954 26 6 10.0378 -0.1626 0.8040 27 6 7.6977 0.9995 1.5004 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9558 0.7808 0.8907 33 1 3.6102 3.2358 0.8910 34 1 3.6108 3.2363 -0.8889 35 1 8.3678 5.0401 -0.7365 36 1 7.1133 3.5284 1.0838 37 1 5.5694 3.5344 1.9695 38 1 4.6977 1.5035 2.9603 39 1 3.2742 0.0392 3.4420 40 1 3.2190 -0.7326 5.0448 41 1 4.0733 0.8144 4.8309 42 1 7.8771 -2.0650 4.2426 43 1 10.3227 0.7911 1.2481 44 1 10.9312 -0.7609 0.6251 45 1 9.5242 0.0155 -0.1407 46 1 8.3916 1.4842 0.8296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877710017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:20 Heat of formation + Delta-G solvation = -152.369369 kcal Electronic energy + Delta-G solvation = -31252.441877 eV Core-core repulsion = 26916.632108 eV Total energy + Delta-G solvation = -4335.809768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.35228 -40.12850 -38.66996 -37.03923 -36.78121 -36.24763 -34.97578 -32.26690 -30.76049 -29.42329 -29.19290 -27.62392 -27.47859 -26.83807 -25.22135 -24.30052 -21.90055 -21.53741 -20.78472 -20.01508 -18.40647 -17.44094 -17.37059 -16.73204 -16.53593 -16.26762 -16.20103 -16.08973 -15.81835 -15.25386 -14.88432 -14.76281 -14.36728 -14.12026 -13.78472 -13.53616 -13.41592 -13.29584 -13.01446 -12.60862 -12.23564 -12.08361 -11.97640 -11.91517 -11.54953 -11.41188 -11.30648 -11.28597 -10.93902 -10.82568 -10.69740 -10.64525 -10.36922 -10.27845 -10.23666 -10.16670 -10.06423 -9.76274 -8.68526 -7.72075 -7.71057 -6.86681 -5.99419 -3.52623 1.71861 1.82672 2.51635 2.98960 3.11992 3.23616 3.31245 3.33262 3.92365 4.04254 4.34058 4.59076 5.08751 5.10795 5.13592 5.15935 5.19337 5.26221 5.30720 5.45074 5.47620 5.48456 5.53531 5.56772 5.59132 5.62017 5.68184 5.73803 5.88024 5.90985 6.13790 6.18874 6.43131 6.52061 6.59760 6.62100 6.71026 6.83924 6.92658 7.19210 7.44201 7.55194 7.59396 7.65436 8.03379 8.15414 8.29638 8.96349 9.58813 10.13847 11.01884 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.007370 B = 0.006042 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3798.468181 B = 4632.991881 C = 7381.622562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.513 6.513 5 C -0.139 4.139 6 C 0.162 3.838 7 N -0.568 5.568 8 C -0.261 4.261 9 H 0.065 0.935 10 C 0.015 3.985 11 N -0.880 5.880 12 Si 0.891 3.109 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.280 1.280 16 C 0.166 3.834 17 C -0.001 4.001 18 C -0.233 4.233 19 C 0.133 3.867 20 O -0.310 6.310 21 C 0.029 3.971 22 C 0.016 3.984 23 O -0.477 6.477 24 C 0.135 3.865 25 O -0.311 6.311 26 C 0.025 3.975 27 C -0.204 4.204 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.258 0.742 36 H 0.114 0.886 37 H 0.040 0.960 38 H 0.125 0.875 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.370 0.630 43 H 0.056 0.944 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 -8.023 7.646 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.306 3.694 4 O -0.401 6.401 5 C -0.179 4.179 6 C 0.035 3.965 7 N -0.285 5.285 8 C -0.390 4.390 9 H 0.082 0.918 10 C -0.186 4.186 11 N -0.522 5.522 12 Si 0.720 3.280 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.207 1.207 16 C 0.040 3.960 17 C -0.005 4.005 18 C -0.253 4.253 19 C 0.087 3.913 20 O -0.224 6.224 21 C -0.067 4.067 22 C -0.031 4.031 23 O -0.283 6.283 24 C 0.089 3.911 25 O -0.224 6.224 26 C -0.070 4.070 27 C -0.224 4.224 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.131 0.869 37 H 0.058 0.942 38 H 0.142 0.858 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.223 0.777 43 H 0.075 0.925 44 H 0.114 0.886 45 H 0.079 0.921 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.187 -8.110 7.247 11.654 hybrid contribution 0.557 0.180 -0.476 0.755 sum -3.630 -7.930 6.770 11.040 Atomic orbital electron populations 1.23175 0.77444 1.03118 1.02230 1.86588 1.22704 1.34542 1.84412 1.24431 0.92736 0.80812 0.71434 1.90624 1.67476 1.36302 1.45687 1.22480 0.84761 1.05086 1.05612 1.20667 0.85231 0.89714 1.00911 1.43722 0.99029 1.83482 1.02280 1.19015 1.05616 1.21450 0.92917 0.91767 1.25050 1.00700 0.94587 0.98231 1.69965 1.26013 1.14098 1.42107 0.86554 0.81356 0.78264 0.81856 1.20440 1.21365 1.20675 1.20243 1.00892 0.89069 0.85822 1.20880 0.90516 0.99304 0.89800 1.20960 1.02838 0.95606 1.05907 1.18943 0.89785 0.91244 0.91324 1.86069 1.29379 1.45357 1.61569 1.23021 0.85063 0.97612 1.00968 1.16535 0.93046 0.88906 1.04580 1.84968 1.78095 1.23970 1.41292 1.19070 0.85544 0.91248 0.95242 1.86042 1.28002 1.45471 1.62914 1.23093 0.93020 0.97647 0.93235 1.21070 1.00795 0.94946 1.05598 0.92245 0.92173 0.88607 0.87983 0.88334 0.93406 0.92244 0.93154 0.86870 0.94174 0.85767 0.92763 0.88615 0.92694 0.77696 0.92548 0.88637 0.92069 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.50 10.57 -39.25 -0.41 -5.91 16 3 C 0.46 7.83 7.96 36.01 0.29 8.11 16 4 O -0.51 -9.67 15.73 -18.75 -0.29 -9.97 16 5 C -0.14 -2.45 6.10 -27.88 -0.17 -2.62 16 6 C 0.16 3.26 5.01 -4.04 -0.02 3.24 16 7 N -0.57 -12.79 2.44 -174.61 -0.43 -13.21 16 8 C -0.26 -6.48 9.48 -15.06 -0.14 -6.62 16 9 H 0.06 1.61 7.93 -52.49 -0.42 1.19 16 10 C 0.02 0.38 4.95 -17.43 -0.09 0.29 16 11 N -0.88 -23.02 11.33 55.49 0.63 -22.39 16 12 Si 0.89 19.80 29.61 -169.99 -5.03 14.77 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 16 C 0.17 3.52 5.46 -5.19 -0.03 3.49 16 17 C 0.00 -0.03 5.44 -104.63 -0.57 -0.60 16 18 C -0.23 -4.01 6.87 -39.42 -0.27 -4.28 16 19 C 0.13 2.29 6.70 -39.15 -0.26 2.03 16 20 O -0.31 -4.85 10.28 -34.33 -0.35 -5.20 16 21 C 0.03 0.33 9.81 101.05 0.99 1.32 16 22 C 0.02 0.28 6.73 -39.03 -0.26 0.02 16 23 O -0.48 -7.99 13.07 -45.28 -0.59 -8.58 16 24 C 0.14 2.50 6.70 -39.15 -0.26 2.24 16 25 O -0.31 -5.40 10.28 -34.33 -0.35 -5.75 16 26 C 0.03 0.36 9.81 101.05 0.99 1.35 16 27 C -0.20 -3.96 8.69 -39.43 -0.34 -4.30 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 32 H 0.10 1.72 6.15 -51.93 -0.32 1.40 16 33 H 0.05 0.93 7.79 -51.93 -0.40 0.52 16 34 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 35 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 36 H 0.11 2.71 5.27 -51.93 -0.27 2.44 16 37 H 0.04 0.81 7.80 -51.93 -0.40 0.40 16 38 H 0.12 1.94 6.27 -52.49 -0.33 1.61 16 39 H 0.05 0.63 7.68 -51.92 -0.40 0.24 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 42 H 0.37 4.49 9.06 45.56 0.41 4.90 16 43 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 44 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.06 0.96 7.66 -51.93 -0.40 0.57 16 46 H 0.13 2.70 6.29 -52.48 -0.33 2.37 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -30.46 387.26 -5.83 -36.29 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.74 Total: 9.00 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 0.92 Total: 5.12 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.20 Total: -35.60 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -2.01 Total: -35.41 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.46 -5.83 -36.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.082 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds