Wall clock time and date at job start Tue Mar 31 2020 22:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 116.99991 * 2 1 4 4 O 1.20820 * 120.00342 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99865 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47118 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.46942 * 180.02562 * 6 5 3 8 8 C 1.36938 * 119.99850 * 84.37916 * 7 6 5 9 9 H 1.07993 * 120.00187 * 325.89393 * 8 7 6 10 10 C 1.38817 * 119.99619 * 145.89399 * 8 7 6 11 11 N 1.31614 * 120.00275 * 336.93952 * 10 8 7 12 12 Si 1.86803 * 119.99691 * 156.94301 * 10 8 7 13 13 H 1.48489 * 109.47427 * 59.99458 * 12 10 8 14 14 H 1.48494 * 109.46893 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46705 * 299.99364 * 12 10 8 16 16 C 1.46500 * 119.99942 * 264.37628 * 7 6 5 17 17 C 1.50703 * 109.46819 * 90.00537 * 16 7 6 18 18 C 1.38232 * 119.90391 * 269.72622 * 17 16 7 19 19 C 1.38668 * 120.08575 * 179.72912 * 18 17 16 20 20 O 1.36001 * 120.04959 * 180.29235 * 19 18 17 21 21 C 1.42901 * 116.99470 * 0.27351 * 20 19 18 22 22 C 1.38986 * 119.91193 * 0.56786 * 19 18 17 23 23 O 1.36088 * 120.09374 * 179.68775 * 22 19 18 24 24 C 1.38984 * 119.81416 * 359.70362 * 22 19 18 25 25 O 1.36002 * 120.03846 * 179.97438 * 24 22 19 26 26 C 1.42901 * 116.99611 * 180.02562 * 25 24 22 27 27 C 1.38222 * 119.91367 * 89.99950 * 17 16 7 28 28 H 1.09002 * 109.46668 * 299.99943 * 1 2 3 29 29 H 1.09007 * 109.46903 * 59.99695 * 1 2 3 30 30 H 1.08994 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46614 * 60.00188 * 5 3 2 32 32 H 1.08995 * 109.47562 * 300.00419 * 5 3 2 33 33 H 1.08994 * 109.46795 * 59.99979 * 6 5 3 34 34 H 1.09000 * 109.47002 * 300.00143 * 6 5 3 35 35 H 0.97001 * 120.00186 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.47090 * 210.00329 * 16 7 6 37 37 H 1.08991 * 109.47135 * 330.00597 * 16 7 6 38 38 H 1.07997 * 119.95935 * 359.97438 * 18 17 16 39 39 H 1.09007 * 109.47088 * 60.00090 * 21 20 19 40 40 H 1.08996 * 109.46737 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47557 * 299.99791 * 21 20 19 42 42 H 0.96695 * 113.99432 * 270.01858 * 23 22 19 43 43 H 1.08996 * 109.46987 * 60.00753 * 26 25 24 44 44 H 1.09000 * 109.46968 * 179.97438 * 26 25 24 45 45 H 1.08994 * 109.47762 * 300.00314 * 26 25 24 46 46 H 1.08004 * 119.95513 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1530 2.7389 -1.1792 9 1 5.7845 2.1134 -1.9788 10 6 7.3259 3.4620 -1.3479 11 7 7.5484 4.5346 -0.6184 12 14 8.5883 2.9127 -2.6105 13 1 7.9701 2.9117 -3.9606 14 1 9.7427 3.8466 -2.5947 15 1 9.0560 1.5428 -2.2791 16 6 6.1883 2.9806 1.2637 17 6 6.5109 1.6240 1.8352 18 6 5.6217 1.0102 2.6974 19 6 5.9122 -0.2405 3.2211 20 8 5.0340 -0.8464 4.0645 21 6 3.8287 -0.1393 4.3634 22 6 7.1046 -0.8717 2.8873 23 8 7.3963 -2.0964 3.4042 24 6 7.9985 -0.2486 2.0246 25 8 9.1669 -0.8618 1.6954 26 6 10.0378 -0.1626 0.8040 27 6 7.6977 0.9995 1.5004 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9558 0.7808 0.8907 33 1 3.6102 3.2358 0.8910 34 1 3.6108 3.2363 -0.8889 35 1 8.3678 5.0401 -0.7365 36 1 7.1133 3.5284 1.0838 37 1 5.5694 3.5344 1.9695 38 1 4.6977 1.5035 2.9603 39 1 3.2742 0.0392 3.4420 40 1 3.2190 -0.7326 5.0448 41 1 4.0733 0.8144 4.8309 42 1 7.8771 -2.0650 4.2426 43 1 10.3227 0.7911 1.2481 44 1 10.9312 -0.7609 0.6251 45 1 9.5242 0.0155 -0.1407 46 1 8.3916 1.4842 0.8296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:19 Heat of formation + Delta-G solvation = -170.959037 kcal Electronic energy + Delta-G solvation = -31253.247985 eV Core-core repulsion = 26916.632108 eV Total energy + Delta-G solvation = -4336.615877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69148 -41.43546 -39.91608 -38.57132 -38.05177 -37.54090 -36.49495 -34.02083 -32.29857 -30.90165 -30.52717 -28.71672 -28.61627 -28.13930 -26.79684 -25.79539 -23.40290 -22.84938 -22.25613 -21.49200 -19.73773 -18.98070 -18.69412 -18.18329 -17.92879 -17.58276 -17.49123 -17.35397 -17.08437 -16.64593 -16.42233 -16.07971 -15.72794 -15.56923 -15.37531 -14.93273 -14.71994 -14.63040 -14.32550 -13.91997 -13.65408 -13.38234 -13.32351 -13.14714 -13.04656 -12.79704 -12.70206 -12.55616 -12.49337 -12.40035 -12.22403 -11.94341 -11.92100 -11.80126 -11.74883 -11.58030 -11.53509 -11.24469 -10.55629 -9.10710 -9.07857 -8.69535 -7.87975 -5.44808 0.30792 0.43594 1.16915 1.45081 1.48667 1.54418 1.79064 1.91517 2.49093 2.66106 2.73591 3.21362 3.29286 3.70012 3.96719 3.99978 4.06645 4.11663 4.15766 4.30736 4.31453 4.33517 4.34273 4.37776 4.39589 4.40528 4.47037 4.65357 4.66325 4.71154 4.74386 4.81292 4.85246 4.96870 5.18281 5.20656 5.27183 5.38802 5.46441 5.58028 5.71194 5.85848 6.26167 6.31184 6.43318 6.73903 6.95771 7.10842 7.76744 8.28779 9.10425 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.007370 B = 0.006042 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3798.468181 B = 4632.991881 C = 7381.622562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.126 4.126 6 C 0.166 3.834 7 N -0.580 5.580 8 C -0.267 4.267 9 H 0.057 0.943 10 C -0.022 4.022 11 N -0.907 5.907 12 Si 0.939 3.061 13 H -0.281 1.281 14 H -0.290 1.290 15 H -0.272 1.272 16 C 0.172 3.828 17 C -0.010 4.010 18 C -0.225 4.225 19 C 0.138 3.862 20 O -0.318 6.318 21 C 0.019 3.981 22 C 0.012 3.988 23 O -0.485 6.485 24 C 0.129 3.871 25 O -0.318 6.318 26 C 0.022 3.978 27 C -0.216 4.216 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.255 0.745 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.141 0.859 39 H 0.053 0.947 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.392 0.608 43 H 0.060 0.940 44 H 0.130 0.870 45 H 0.043 0.957 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 -9.937 8.714 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C 0.316 3.684 4 O -0.425 6.425 5 C -0.166 4.166 6 C 0.040 3.960 7 N -0.298 5.298 8 C -0.397 4.397 9 H 0.075 0.925 10 C -0.220 4.220 11 N -0.550 5.550 12 Si 0.767 3.233 13 H -0.207 1.207 14 H -0.215 1.215 15 H -0.198 1.198 16 C 0.047 3.953 17 C -0.014 4.014 18 C -0.244 4.244 19 C 0.092 3.908 20 O -0.231 6.231 21 C -0.076 4.076 22 C -0.035 4.035 23 O -0.295 6.295 24 C 0.083 3.917 25 O -0.231 6.231 26 C -0.073 4.073 27 C -0.236 4.236 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.159 0.841 39 H 0.072 0.928 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.247 0.753 43 H 0.078 0.922 44 H 0.148 0.852 45 H 0.062 0.938 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.093 -10.061 8.339 14.025 hybrid contribution 0.722 0.689 -0.718 1.229 sum -4.371 -9.372 7.621 12.846 Atomic orbital electron populations 1.23554 0.74916 1.05613 1.02580 1.86550 1.25090 1.33031 1.83790 1.24050 0.92249 0.81109 0.70963 1.90620 1.67846 1.37164 1.46877 1.22138 0.85839 1.02994 1.05607 1.20587 0.84041 0.91288 1.00130 1.43823 0.99895 1.83979 1.02137 1.19137 1.05990 1.20874 0.93680 0.92532 1.25559 1.01950 0.94631 0.99839 1.70069 1.26190 1.15081 1.43667 0.85794 0.79480 0.78133 0.79887 1.20685 1.21537 1.19808 1.20034 0.99581 0.90157 0.85552 1.20620 0.91303 0.98368 0.91067 1.20983 1.02808 0.95649 1.04981 1.18933 0.89857 0.90911 0.91132 1.86075 1.30276 1.45965 1.60773 1.23359 0.83770 0.98714 1.01716 1.16691 0.93267 0.89103 1.04432 1.84895 1.78515 1.23336 1.42714 1.19127 0.86212 0.90970 0.95383 1.86030 1.27843 1.45897 1.63336 1.23289 0.93408 0.98647 0.91907 1.20962 1.00878 0.95650 1.06073 0.91629 0.92183 0.85083 0.88559 0.87772 0.92840 0.94315 0.93557 0.89603 0.93510 0.84122 0.92828 0.85560 0.91573 0.75255 0.92169 0.85159 0.93797 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.37 -10.28 10.57 -51.38 -0.54 -10.83 16 3 C 0.47 15.41 7.96 71.24 0.57 15.98 16 4 O -0.54 -19.71 15.73 21.98 0.35 -19.36 16 5 C -0.13 -4.37 6.10 29.85 0.18 -4.18 16 6 C 0.17 6.73 5.01 86.38 0.43 7.17 16 7 N -0.58 -26.59 2.44 -706.35 -1.73 -28.32 16 8 C -0.27 -13.56 9.48 84.03 0.80 -12.77 16 9 H 0.06 2.90 7.93 -2.91 -0.02 2.88 16 10 C -0.02 -1.10 4.95 84.86 0.42 -0.68 16 11 N -0.91 -48.78 11.33 21.65 0.25 -48.53 16 12 Si 0.94 41.33 29.61 68.60 2.03 43.37 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 16 C 0.17 7.47 5.46 85.63 0.47 7.93 16 17 C -0.01 -0.40 5.44 -19.87 -0.11 -0.51 16 18 C -0.22 -7.43 6.87 22.37 0.15 -7.27 16 19 C 0.14 4.50 6.70 22.55 0.15 4.65 16 20 O -0.32 -9.04 10.28 -79.62 -0.82 -9.86 16 21 C 0.02 0.37 9.81 113.37 1.11 1.48 16 22 C 0.01 0.40 6.73 22.63 0.15 0.55 16 23 O -0.49 -15.28 13.07 -70.40 -0.92 -16.20 16 24 C 0.13 4.72 6.70 22.55 0.15 4.87 16 25 O -0.32 -10.75 10.28 -79.63 -0.82 -11.57 16 26 C 0.02 0.62 9.81 113.37 1.11 1.73 16 27 C -0.22 -8.45 8.69 22.37 0.19 -8.25 16 28 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 29 H 0.06 1.19 8.13 -2.38 -0.02 1.17 16 30 H 0.13 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.10 3.48 8.14 -2.38 -0.02 3.46 16 32 H 0.10 3.51 6.15 -2.39 -0.01 3.50 16 33 H 0.05 2.08 7.79 -2.39 -0.02 2.06 16 34 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 35 H 0.26 13.33 8.31 -92.71 -0.77 12.55 16 36 H 0.09 4.27 5.27 -2.39 -0.01 4.25 16 37 H 0.05 1.90 7.80 -2.39 -0.02 1.88 16 38 H 0.14 4.11 6.27 -2.91 -0.02 4.09 16 39 H 0.05 1.09 7.68 -2.38 -0.02 1.07 16 40 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 1.19 7.65 -2.39 -0.02 1.17 16 42 H 0.39 8.61 9.06 -74.06 -0.67 7.94 16 43 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 44 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.04 1.38 7.66 -2.39 -0.02 1.36 16 46 H 0.12 4.94 6.29 -2.91 -0.02 4.92 16 Total: -1.00 -65.67 387.26 5.12 -60.55 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.35 Total: 28.34 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.98 Total: 12.42 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -1.48 Total: -76.85 kcal Atomic # 8 Polarization: -65.06 SS G_CDS: -2.75 Total: -67.82 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.37 kcal Total: -65.67 5.12 -60.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.408 kcal (2) G-P(sol) polarization free energy of solvation -65.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds