Wall clock time and date at job start Tue Mar 31 2020 23:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00256 * 2 1 4 4 H 1.48508 * 109.46763 * 239.99625 * 3 2 1 5 5 H 1.48506 * 109.46865 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47267 * 119.99556 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 7 12 12 O 1.21281 * 120.00220 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00080 * 180.02562 * 11 10 9 14 14 N 1.46889 * 109.47109 * 180.02562 * 13 11 10 15 15 C 1.46959 * 111.00102 * 293.79785 * 14 13 11 16 16 C 1.53049 * 109.36362 * 176.81680 * 15 14 13 17 17 N 1.46955 * 109.36833 * 58.40206 * 16 15 14 18 18 C 1.39995 * 110.99798 * 176.80989 * 17 16 15 19 19 C 1.38795 * 120.05264 * 63.80201 * 18 17 16 20 20 C 1.38170 * 119.96956 * 179.97438 * 19 18 17 21 21 C 1.38461 * 120.08858 * 0.02562 * 20 19 18 22 22 F 1.35094 * 119.94599 * 179.97438 * 21 20 19 23 23 C 1.38461 * 120.10692 * 359.97438 * 21 20 19 24 24 C 1.38289 * 120.02781 * 359.75140 * 23 21 20 25 25 F 1.35103 * 120.04527 * 180.25601 * 24 23 21 26 26 C 1.46955 * 110.87907 * 300.67589 * 17 16 15 27 27 C 1.46965 * 110.99870 * 170.00198 * 14 13 11 28 28 H 0.97005 * 119.99648 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47545 * 60.00113 * 9 7 2 30 30 H 1.08998 * 109.47669 * 300.00056 * 9 7 2 31 31 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 32 32 H 1.09004 * 109.46762 * 300.00389 * 13 11 10 33 33 H 1.08998 * 109.46924 * 59.99727 * 13 11 10 34 34 H 1.09007 * 109.48694 * 296.78149 * 15 14 13 35 35 H 1.09001 * 109.48949 * 56.84570 * 15 14 13 36 36 H 1.09002 * 109.48821 * 298.42916 * 16 15 14 37 37 H 1.09009 * 109.50251 * 178.38247 * 16 15 14 38 38 H 1.07990 * 120.01734 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.95495 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.98315 * 179.97438 * 23 21 20 41 41 H 1.08990 * 109.49170 * 299.35491 * 26 17 16 42 42 H 1.08999 * 109.48583 * 179.28614 * 26 17 16 43 43 H 1.08995 * 109.48409 * 303.15092 * 27 14 13 44 44 H 1.08996 * 109.48948 * 63.19607 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0062 12 8 0.5612 -5.1049 0.0108 13 6 2.7329 -6.0289 0.0068 14 7 1.9984 -7.3009 0.0127 15 6 1.2592 -7.4764 1.2708 16 6 0.4465 -8.7716 1.2054 17 7 1.3526 -9.9040 0.9679 18 6 0.6525 -11.1164 0.9737 19 6 -0.3123 -11.3665 0.0078 20 6 -1.0019 -12.5638 0.0148 21 6 -0.7321 -13.5146 0.9845 22 9 -1.4083 -14.6840 0.9889 23 6 0.2298 -13.2687 1.9497 24 6 0.9267 -12.0742 1.9437 25 9 1.8689 -11.8360 2.8822 26 6 2.0916 -9.7286 -0.2901 27 6 2.9045 -8.4334 -0.2247 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 3.1567 -3.4355 0.0009 32 1 3.3567 -5.9740 -0.8854 33 1 3.3625 -5.9682 0.8945 34 1 1.9630 -7.5302 2.1015 35 1 0.5862 -6.6318 1.4180 36 1 -0.2759 -8.7070 0.3917 37 1 -0.0802 -8.9188 2.1484 38 1 -0.5241 -10.6256 -0.7488 39 1 -1.7529 -12.7580 -0.7367 40 1 0.4383 -14.0115 2.7054 41 1 1.3880 -9.6749 -1.1207 42 1 2.7647 -10.5733 -0.4372 43 1 3.4307 -8.2864 -1.1678 44 1 3.6270 -8.4978 0.5888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879597319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:33 Heat of formation + Delta-G solvation = -77.517321 kcal Electronic energy + Delta-G solvation = -28615.706020 eV Core-core repulsion = 24204.347315 eV Total energy + Delta-G solvation = -4411.358704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.39723 -49.15649 -40.46411 -39.14621 -37.90007 -35.30481 -34.11798 -32.35052 -31.28123 -31.07132 -30.49984 -28.33170 -26.78816 -24.69448 -23.76693 -23.62603 -22.49775 -22.09216 -19.93426 -19.67035 -18.60670 -17.51429 -17.46849 -17.13671 -16.35980 -16.06618 -15.84366 -15.66616 -15.58991 -15.33406 -15.01633 -14.90729 -14.73227 -14.64566 -14.35473 -14.19243 -14.08322 -13.59180 -13.19009 -12.70774 -12.62970 -12.45188 -12.30350 -12.02684 -12.00612 -11.88406 -11.57107 -11.39413 -11.06648 -11.02556 -10.97070 -10.81702 -10.32162 -9.51114 -9.42524 -9.07816 -8.95231 -8.85718 -8.74076 -8.26437 -7.87229 -6.17914 -4.24963 0.46394 0.57254 2.87796 3.24109 3.27436 3.29053 3.30371 3.36555 3.52168 3.62201 4.01076 4.19551 4.23046 4.40204 4.42667 4.59694 4.71544 4.91262 5.03827 5.06659 5.14726 5.18055 5.25155 5.34392 5.36572 5.45197 5.47952 5.50558 5.54567 5.58873 5.60663 5.65020 5.77601 5.94349 6.07440 6.19702 6.56311 6.82357 6.98569 7.05572 7.30775 7.43462 7.50720 7.65959 7.95975 8.62078 8.77453 9.10624 9.41801 10.92160 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.030179 B = 0.001846 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.561578 B =15167.891205 C =15497.582425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.715 5.715 11 C 0.499 3.501 12 O -0.540 6.540 13 C 0.036 3.964 14 N -0.521 5.521 15 C 0.053 3.947 16 C 0.066 3.934 17 N -0.503 5.503 18 C 0.048 3.952 19 C -0.088 4.088 20 C -0.154 4.154 21 C 0.125 3.875 22 F -0.132 7.132 23 C -0.191 4.191 24 C 0.155 3.845 25 F -0.118 7.118 26 C 0.064 3.936 27 C 0.057 3.943 28 H 0.266 0.734 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.390 0.610 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -26.963 1.029 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.364 5.364 11 C 0.283 3.717 12 O -0.418 6.418 13 C -0.095 4.095 14 N -0.246 5.246 15 C -0.075 4.075 16 C -0.060 4.060 17 N -0.225 5.225 18 C -0.047 4.047 19 C -0.108 4.108 20 C -0.174 4.174 21 C 0.106 3.894 22 F -0.111 7.111 23 C -0.211 4.211 24 C 0.134 3.866 25 F -0.097 7.097 26 C -0.063 4.063 27 C -0.072 4.072 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.222 0.778 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.774 -26.960 1.068 27.123 hybrid contribution 0.992 0.850 0.184 1.319 sum 3.765 -26.110 1.252 26.410 Atomic orbital electron populations 1.69965 1.06100 1.27416 1.48774 1.24956 0.94925 0.99453 0.94702 0.86473 0.79415 0.82320 0.78679 1.20071 1.21069 1.20079 1.21194 0.93227 0.90503 1.53355 0.91966 1.19073 0.88253 0.81877 0.97667 1.46463 1.11099 1.06118 1.72685 1.20285 0.89540 0.84075 0.77806 1.90618 1.16674 1.84531 1.50021 1.21998 0.95450 0.89352 1.02719 1.61805 1.26674 1.00526 1.35570 1.22367 0.97800 0.97916 0.89401 1.22272 0.93752 0.88311 1.01681 1.59850 1.27114 0.99775 1.35770 1.18883 0.96978 0.92873 0.95968 1.21510 0.94240 0.96846 0.98248 1.21113 1.02739 0.93676 0.99852 1.17297 0.93076 0.82708 0.96359 1.91535 1.78222 1.45253 1.96061 1.20996 0.99288 0.98572 1.02231 1.17164 0.88766 0.92835 0.87824 1.91549 1.61518 1.94437 1.62155 1.22246 0.97075 0.97721 0.89235 1.22182 0.94014 0.89502 1.01465 0.92388 0.95563 0.95627 0.77808 0.88264 0.92258 0.94416 0.87385 0.92801 0.90095 0.83821 0.83918 0.83202 0.93013 0.90099 0.89814 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 10 N -0.71 -14.55 5.55 -61.47 -0.34 -14.89 16 11 C 0.50 9.51 7.53 -10.98 -0.08 9.43 16 12 O -0.54 -12.38 14.34 5.56 0.08 -12.30 16 13 C 0.04 0.49 5.45 -4.98 -0.03 0.46 16 14 N -0.52 -6.97 4.45 -235.90 -1.05 -8.02 16 15 C 0.05 0.73 5.26 -3.77 -0.02 0.71 16 16 C 0.07 0.78 5.36 -3.77 -0.02 0.76 16 17 N -0.50 -5.37 4.52 -170.85 -0.77 -6.14 16 18 C 0.05 0.47 4.74 -83.62 -0.40 0.07 16 19 C -0.09 -0.71 8.64 -39.40 -0.34 -1.05 16 20 C -0.15 -1.12 10.02 -39.52 -0.40 -1.52 16 21 C 0.13 1.01 7.30 -39.42 -0.29 0.72 16 22 F -0.13 -1.14 17.26 2.25 0.04 -1.10 16 23 C -0.19 -1.54 10.00 -39.48 -0.39 -1.94 16 24 C 0.15 1.49 7.31 -39.26 -0.29 1.21 16 25 F -0.12 -1.31 17.08 2.25 0.04 -1.27 16 26 C 0.06 0.61 5.31 -3.77 -0.02 0.59 16 27 C 0.06 0.58 5.61 -3.76 -0.02 0.56 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.39 6.74 8.32 -40.82 -0.34 6.40 16 32 H 0.10 1.14 8.03 -51.93 -0.42 0.72 16 33 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 34 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.11 1.80 5.85 -51.93 -0.30 1.50 16 36 H 0.05 0.66 7.45 -51.93 -0.39 0.27 16 37 H 0.08 0.91 8.13 -51.92 -0.42 0.49 16 38 H 0.14 1.06 7.06 -52.49 -0.37 0.69 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.05 0.50 7.24 -51.93 -0.38 0.12 16 42 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 43 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 44 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -31.76 371.01 -9.39 -41.14 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.95 Total: 3.23 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.74 Total: 3.26 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -1.43 Total: -54.20 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.08 Total: -2.37 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.76 -9.39 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879597319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.372 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds