Wall clock time and date at job start Tue Mar 31 2020 23:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00256 * 2 1 4 4 H 1.48508 * 109.46763 * 239.99625 * 3 2 1 5 5 H 1.48506 * 109.46865 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47267 * 119.99556 * 3 2 1 7 7 C 1.37879 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99969 * 179.72251 * 10 9 7 12 12 O 1.21281 * 120.00220 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00080 * 180.02562 * 11 10 9 14 14 N 1.46889 * 109.47109 * 180.02562 * 13 11 10 15 15 C 1.46959 * 111.00102 * 293.79785 * 14 13 11 16 16 C 1.53049 * 109.36362 * 176.81680 * 15 14 13 17 17 N 1.46955 * 109.36833 * 58.40206 * 16 15 14 18 18 C 1.39995 * 110.99798 * 176.80989 * 17 16 15 19 19 C 1.38795 * 120.05264 * 63.80201 * 18 17 16 20 20 C 1.38170 * 119.96956 * 179.97438 * 19 18 17 21 21 C 1.38461 * 120.08858 * 0.02562 * 20 19 18 22 22 F 1.35094 * 119.94599 * 179.97438 * 21 20 19 23 23 C 1.38461 * 120.10692 * 359.97438 * 21 20 19 24 24 C 1.38289 * 120.02781 * 359.75140 * 23 21 20 25 25 F 1.35103 * 120.04527 * 180.25601 * 24 23 21 26 26 C 1.46955 * 110.87907 * 300.67589 * 17 16 15 27 27 C 1.46965 * 110.99870 * 170.00198 * 14 13 11 28 28 H 0.97005 * 119.99648 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47545 * 60.00113 * 9 7 2 30 30 H 1.08998 * 109.47669 * 300.00056 * 9 7 2 31 31 H 0.97005 * 119.99811 * 0.02562 * 10 9 7 32 32 H 1.09004 * 109.46762 * 300.00389 * 13 11 10 33 33 H 1.08998 * 109.46924 * 59.99727 * 13 11 10 34 34 H 1.09007 * 109.48694 * 296.78149 * 15 14 13 35 35 H 1.09001 * 109.48949 * 56.84570 * 15 14 13 36 36 H 1.09002 * 109.48821 * 298.42916 * 16 15 14 37 37 H 1.09009 * 109.50251 * 178.38247 * 16 15 14 38 38 H 1.07990 * 120.01734 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.95495 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.98315 * 179.97438 * 23 21 20 41 41 H 1.08990 * 109.49170 * 299.35491 * 26 17 16 42 42 H 1.08999 * 109.48583 * 179.28614 * 26 17 16 43 43 H 1.08995 * 109.48409 * 303.15092 * 27 14 13 44 44 H 1.08996 * 109.48948 * 63.19607 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0062 12 8 0.5612 -5.1049 0.0108 13 6 2.7329 -6.0289 0.0068 14 7 1.9984 -7.3009 0.0127 15 6 1.2592 -7.4764 1.2708 16 6 0.4465 -8.7716 1.2054 17 7 1.3526 -9.9040 0.9679 18 6 0.6525 -11.1164 0.9737 19 6 -0.3123 -11.3665 0.0078 20 6 -1.0019 -12.5638 0.0148 21 6 -0.7321 -13.5146 0.9845 22 9 -1.4083 -14.6840 0.9889 23 6 0.2298 -13.2687 1.9497 24 6 0.9267 -12.0742 1.9437 25 9 1.8689 -11.8360 2.8822 26 6 2.0916 -9.7286 -0.2901 27 6 2.9045 -8.4334 -0.2247 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 3.1567 -3.4355 0.0009 32 1 3.3567 -5.9740 -0.8854 33 1 3.3625 -5.9682 0.8945 34 1 1.9630 -7.5302 2.1015 35 1 0.5862 -6.6318 1.4180 36 1 -0.2759 -8.7070 0.3917 37 1 -0.0802 -8.9188 2.1484 38 1 -0.5241 -10.6256 -0.7488 39 1 -1.7529 -12.7580 -0.7367 40 1 0.4383 -14.0115 2.7054 41 1 1.3880 -9.6749 -1.1207 42 1 2.7647 -10.5733 -0.4372 43 1 3.4307 -8.2864 -1.1678 44 1 3.6270 -8.4978 0.5888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879597319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:32 Heat of formation + Delta-G solvation = -99.961340 kcal Electronic energy + Delta-G solvation = -28616.679266 eV Core-core repulsion = 24204.347315 eV Total energy + Delta-G solvation = -4412.331950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.04857 -49.92308 -41.33543 -40.45591 -38.91499 -36.38041 -35.88794 -34.32581 -31.97803 -31.91653 -31.44431 -29.77667 -28.22170 -25.85649 -24.67532 -24.46387 -24.04759 -22.99234 -21.34065 -20.80406 -19.29519 -18.91887 -18.25882 -18.19430 -17.50142 -17.13733 -17.05548 -16.73564 -16.58792 -16.37710 -16.35803 -15.86009 -15.74173 -15.63965 -15.38344 -15.33880 -15.16134 -14.69615 -14.27424 -14.20313 -13.92876 -13.70139 -13.36114 -13.28567 -12.98695 -12.90123 -12.71673 -12.65331 -12.61540 -12.30428 -12.23102 -12.04600 -11.89917 -11.49640 -10.77784 -10.61593 -10.15000 -9.78788 -9.70289 -9.63591 -9.28094 -8.28148 -6.44626 -0.20476 -0.06556 1.43590 1.47520 1.55654 1.83232 2.22766 2.27635 2.45593 2.54350 2.84405 3.04478 3.06595 3.35458 3.57405 3.76521 3.86256 3.94159 4.05189 4.11886 4.18165 4.25695 4.32831 4.40993 4.42479 4.51891 4.58157 4.72746 4.78370 4.81950 4.87525 4.90062 4.96924 5.04560 5.11644 5.13712 5.26792 5.50674 5.53024 5.70639 5.72139 5.86156 5.90056 6.09911 6.18106 6.66784 6.98217 7.25041 7.56469 8.83643 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.030179 B = 0.001846 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.561578 B =15167.891205 C =15497.582425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.270 3.730 10 N -0.711 5.711 11 C 0.494 3.506 12 O -0.584 6.584 13 C 0.050 3.950 14 N -0.538 5.538 15 C 0.058 3.942 16 C 0.074 3.926 17 N -0.508 5.508 18 C 0.038 3.962 19 C -0.087 4.087 20 C -0.145 4.145 21 C 0.121 3.879 22 F -0.135 7.135 23 C -0.185 4.185 24 C 0.140 3.860 25 F -0.131 7.131 26 C 0.064 3.936 27 C 0.059 3.941 28 H 0.268 0.732 29 H -0.014 1.014 30 H -0.015 1.015 31 H 0.408 0.592 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.150 0.850 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.104 -27.915 0.394 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.147 3.853 10 N -0.361 5.361 11 C 0.281 3.719 12 O -0.464 6.464 13 C -0.080 4.080 14 N -0.263 5.263 15 C -0.070 4.070 16 C -0.052 4.052 17 N -0.230 5.230 18 C -0.058 4.058 19 C -0.107 4.107 20 C -0.164 4.164 21 C 0.101 3.899 22 F -0.113 7.113 23 C -0.205 4.205 24 C 0.119 3.881 25 F -0.109 7.109 26 C -0.063 4.063 27 C -0.068 4.068 28 H 0.077 0.923 29 H 0.004 0.996 30 H 0.003 0.997 31 H 0.243 0.757 32 H 0.150 0.850 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.168 0.832 39 H 0.182 0.818 40 H 0.182 0.818 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.124 0.876 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.139 -27.957 0.430 28.429 hybrid contribution 0.197 1.031 0.375 1.115 sum 5.336 -26.926 0.805 27.462 Atomic orbital electron populations 1.70135 1.08254 1.28566 1.49979 1.26073 0.95784 1.03922 0.93933 0.85217 0.77906 0.76657 0.79489 1.18623 1.21203 1.18700 1.21611 0.94332 0.90655 1.52838 0.89786 1.18473 0.88647 0.84311 0.93895 1.46195 1.11141 1.05558 1.73254 1.21349 0.90022 0.84707 0.75786 1.90607 1.19197 1.85166 1.51464 1.21928 0.93812 0.86981 1.05305 1.61766 1.27895 1.01398 1.35252 1.22170 0.97440 0.97427 0.89952 1.22097 0.93505 0.88213 1.01393 1.59802 1.26961 0.99637 1.36580 1.18958 0.97689 0.92488 0.96627 1.21551 0.93897 0.97281 0.97988 1.21326 1.02445 0.92884 0.99751 1.17384 0.93112 0.82785 0.96595 1.91533 1.78266 1.45422 1.96087 1.21113 0.98682 0.98278 1.02400 1.17297 0.89269 0.93578 0.87949 1.91514 1.62101 1.94598 1.62681 1.22316 0.97202 0.98050 0.88690 1.22284 0.93562 0.88272 1.02688 0.92303 0.99625 0.99674 0.75670 0.85032 0.89877 0.94225 0.91108 0.93619 0.90171 0.83210 0.81840 0.81769 0.93026 0.88389 0.87600 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.98 42.03 29.54 68.60 2.03 44.06 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.56 -30.02 9.28 25.60 0.24 -29.78 16 8 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.27 14.68 5.43 85.63 0.46 15.14 16 10 N -0.71 -29.18 5.55 -466.78 -2.59 -31.77 16 11 C 0.49 19.03 7.53 87.66 0.66 19.69 16 12 O -0.58 -28.01 14.34 -3.03 -0.04 -28.06 16 13 C 0.05 1.27 5.45 85.56 0.47 1.74 16 14 N -0.54 -13.70 4.45 -900.26 -4.00 -17.70 16 15 C 0.06 1.61 5.26 86.31 0.45 2.07 16 16 C 0.07 1.76 5.36 86.31 0.46 2.23 16 17 N -0.51 -10.32 4.52 -694.44 -3.14 -13.46 16 18 C 0.04 0.68 4.74 38.17 0.18 0.86 16 19 C -0.09 -1.28 8.64 22.39 0.19 -1.09 16 20 C -0.14 -1.83 10.02 22.31 0.22 -1.61 16 21 C 0.12 1.74 7.30 22.38 0.16 1.91 16 22 F -0.13 -2.09 17.26 44.97 0.78 -1.31 16 23 C -0.18 -2.75 10.00 22.34 0.22 -2.52 16 24 C 0.14 2.56 7.31 22.48 0.16 2.72 16 25 F -0.13 -2.82 17.08 44.97 0.77 -2.05 16 26 C 0.06 1.09 5.31 86.31 0.46 1.55 16 27 C 0.06 1.06 5.61 86.31 0.48 1.54 16 28 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 29 H -0.01 -0.88 8.14 -2.39 -0.02 -0.89 16 30 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 31 H 0.41 13.60 8.32 -92.70 -0.77 12.82 16 32 H 0.13 2.54 8.03 -2.39 -0.02 2.52 16 33 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 34 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.07 2.50 5.85 -2.39 -0.01 2.49 16 36 H 0.05 1.14 7.45 -2.39 -0.02 1.12 16 37 H 0.08 1.86 8.13 -2.38 -0.02 1.84 16 38 H 0.15 2.02 7.06 -2.92 -0.02 2.00 16 39 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.05 0.89 7.24 -2.39 -0.02 0.87 16 42 H 0.10 1.36 8.13 -2.39 -0.02 1.34 16 43 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 44 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -72.10 371.01 -0.36 -72.46 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.27 Total: 18.58 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 5.30 Total: 15.04 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -9.45 Total: -118.72 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.04 Total: -28.06 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 1.54 Total: -3.36 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -72.10 -0.36 -72.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879597319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.503 kcal (2) G-P(sol) polarization free energy of solvation -72.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds