Wall clock time and date at job start Tue Mar 31 2020 22:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99886 * 2 1 4 4 C 1.50700 * 109.46967 * 269.99676 * 3 2 1 5 5 H 1.08000 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00237 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99572 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00039 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47132 * 90.00137 * 8 6 4 10 10 H 1.48501 * 109.46582 * 210.00071 * 8 6 4 11 11 H 1.48502 * 109.47040 * 329.99814 * 8 6 4 12 12 C 1.34775 * 120.00364 * 179.97438 * 2 1 3 13 13 O 1.21602 * 120.00313 * 180.02562 * 12 2 1 14 14 N 1.34777 * 119.99736 * 0.02562 * 12 2 1 15 15 C 1.40849 * 120.00021 * 179.97438 * 14 12 2 16 16 C 1.40236 * 126.07591 * 359.97438 * 15 14 12 17 17 N 1.30832 * 108.34137 * 179.73648 * 16 15 14 18 18 N 1.40068 * 108.36625 * 0.44217 * 17 16 15 19 19 C 1.46501 * 126.06010 * 179.81657 * 18 17 16 20 20 C 1.50696 * 109.47297 * 304.68809 * 19 18 17 21 21 C 1.38365 * 119.84487 * 89.99842 * 20 19 18 22 22 C 1.37947 * 120.14939 * 180.02562 * 21 20 19 23 23 C 1.39629 * 119.84839 * 359.97438 * 22 21 20 24 24 C 1.43205 * 120.15217 * 180.02562 * 23 22 21 25 25 N 9.00258 * 144.02482 * 270.00663 * 15 1 2 26 26 C 1.39630 * 119.69955 * 0.27680 * 23 22 21 27 27 C 1.37951 * 119.84583 * 359.44533 * 26 23 22 28 28 C 1.35729 * 126.07621 * 179.97438 * 15 14 12 29 29 H 1.09001 * 109.47014 * 270.00314 * 1 2 3 30 30 H 1.08998 * 109.47437 * 30.00469 * 1 2 3 31 31 H 1.09007 * 109.46893 * 150.00338 * 1 2 3 32 32 H 1.08995 * 109.47437 * 29.99532 * 3 2 1 33 33 H 1.09003 * 109.46906 * 150.00171 * 3 2 1 34 34 H 0.97006 * 120.00134 * 179.97438 * 7 6 4 35 35 H 0.96997 * 120.00416 * 359.97438 * 14 12 2 36 36 H 1.08003 * 125.82737 * 0.02562 * 16 15 14 37 37 H 1.09004 * 109.47020 * 184.68933 * 19 18 17 38 38 H 1.08995 * 109.47230 * 64.69153 * 19 18 17 39 39 H 1.07993 * 119.92704 * 0.02562 * 21 20 19 40 40 H 1.08003 * 120.07687 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.08232 * 179.69881 * 26 23 22 42 42 H 1.08002 * 119.92831 * 180.25347 * 27 26 23 43 43 H 1.07998 * 126.21355 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1260 2.8780 -1.6729 7 7 3.5532 3.6181 -0.6733 8 14 3.4367 3.4174 -3.4341 9 1 2.3063 4.2600 -3.9004 10 1 4.6968 4.2008 -3.4967 11 1 3.5542 2.2204 -4.3050 12 6 2.1389 -1.1671 0.0005 13 8 3.3549 -1.1671 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1693 -3.5541 0.0005 16 6 3.5638 -3.7025 0.0000 17 7 3.8418 -4.9810 0.0059 18 7 2.6366 -5.6947 0.0001 19 6 2.4981 -7.1531 0.0000 20 6 3.2614 -7.7302 -1.1642 21 6 4.5891 -8.0869 -1.0081 22 6 5.2940 -8.6152 -2.0697 23 6 4.6644 -8.7902 -3.3037 24 6 5.3898 -9.3385 -4.4100 25 7 5.9655 -9.7733 -5.2870 26 6 3.3258 -8.4232 -3.4556 27 6 2.6311 -7.9014 -2.3840 28 6 1.6189 -4.7948 0.0010 29 1 -0.3633 0.0001 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 4.0301 4.4441 -0.8505 35 1 0.4951 -2.3344 0.0005 36 1 4.2851 -2.8987 -0.0001 37 1 1.4445 -7.4180 -0.0892 38 1 2.8963 -7.5560 0.9312 39 1 5.0747 -7.9514 -0.0531 40 1 6.3302 -8.8935 -1.9465 41 1 2.8341 -8.5513 -4.4086 42 1 1.5945 -7.6209 -2.4989 43 1 0.5637 -5.0247 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880651186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:14 Heat of formation + Delta-G solvation = 125.475933 kcal Electronic energy + Delta-G solvation = -27190.690986 eV Core-core repulsion = 23238.823916 eV Total energy + Delta-G solvation = -3951.867070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21009 -39.93934 -39.19488 -36.92199 -35.15467 -34.51880 -33.72735 -32.47139 -31.57232 -31.09339 -29.14648 -27.69333 -26.70894 -25.61698 -23.30195 -23.16790 -22.98277 -21.19922 -20.77432 -19.36577 -19.13390 -17.51837 -17.07885 -16.51835 -16.39341 -16.14043 -15.60580 -15.07282 -14.91868 -14.67820 -14.53096 -14.37395 -14.07846 -13.99440 -13.82402 -13.32932 -13.29342 -13.03230 -12.86495 -12.63571 -12.58499 -12.45713 -12.18594 -12.01488 -11.88722 -11.52478 -11.18866 -10.91286 -10.62485 -10.55137 -10.40425 -10.12481 -9.62173 -9.47737 -9.34709 -9.25035 -9.22435 -8.41699 -7.81977 -7.31793 -6.02386 -4.06867 0.22328 0.89670 1.89624 2.26822 2.28903 2.73683 3.00518 3.30749 3.31823 3.38968 3.43660 3.44811 3.50463 4.04492 4.08683 4.25403 4.41450 4.43530 4.56516 4.61067 4.78381 4.84331 4.98984 5.07437 5.24411 5.30146 5.31927 5.49790 5.50534 5.67368 5.73584 5.78486 5.83033 5.85257 6.02185 6.12817 6.31610 6.53696 6.80023 6.99456 7.09222 7.23413 7.36315 7.53010 7.66687 7.86810 7.96536 8.24964 8.62705 8.94230 9.28618 9.58647 11.05374 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.002274 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.417118 B =12309.256143 C =13740.707220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.613 5.613 3 C 0.260 3.740 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.702 3.298 13 O -0.573 6.573 14 N -0.671 5.671 15 C 0.047 3.953 16 C 0.056 3.944 17 N -0.282 5.282 18 N -0.381 5.381 19 C 0.183 3.817 20 C -0.078 4.078 21 C -0.083 4.083 22 C -0.072 4.072 23 C -0.023 4.023 24 C 0.254 3.746 25 N -0.417 5.417 26 C -0.074 4.074 27 C -0.100 4.100 28 C -0.009 4.009 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.400 0.600 36 H 0.209 0.791 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 -25.235 3.042 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.349 5.349 3 C 0.141 3.859 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.404 3.596 13 O -0.449 6.449 14 N -0.321 5.321 15 C -0.059 4.059 16 C -0.132 4.132 17 N -0.103 5.103 18 N -0.167 5.167 19 C 0.061 3.939 20 C -0.079 4.079 21 C -0.102 4.102 22 C -0.093 4.093 23 C -0.027 4.027 24 C -0.061 4.061 25 N -0.092 5.092 26 C -0.094 4.094 27 C -0.119 4.119 28 C -0.155 4.155 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.226 0.774 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.931 -26.601 1.745 27.310 hybrid contribution -1.387 1.299 -0.773 2.052 sum -7.318 -25.301 0.972 26.356 Atomic orbital electron populations 1.21581 0.81748 1.02347 1.00320 1.47451 1.05648 1.06295 1.75466 1.19246 0.92411 0.76822 0.97451 1.21453 1.36444 1.06152 0.92399 0.92504 1.24922 0.95383 0.96424 0.97368 1.69927 1.38452 1.14342 1.30681 0.86507 0.77644 0.78570 0.84758 1.20723 1.21098 1.19908 1.15807 0.85406 0.79866 0.78530 1.90761 1.11524 1.85335 1.57322 1.42270 1.08894 1.02570 1.78397 1.17582 0.92030 0.84945 1.11350 1.24687 0.95365 0.93866 0.99261 1.77347 1.04582 1.04756 1.23654 1.48145 1.03752 1.04715 1.60130 1.20447 1.01065 0.75293 0.97055 1.20155 0.94934 0.97628 0.95208 1.21022 0.93215 0.96516 0.99447 1.21198 1.00122 0.97016 0.90925 1.16054 0.93281 1.03784 0.89550 1.25725 0.93574 0.93628 0.93170 1.81255 1.08467 1.09311 1.10150 1.21143 0.92197 0.96642 0.99446 1.20990 1.00554 0.98540 0.91768 1.21642 0.94444 0.88172 1.11232 0.93707 0.90355 0.93184 0.94820 0.93570 0.92728 0.76426 0.77440 0.87674 0.88850 0.84443 0.84722 0.84827 0.84850 0.81144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.20 59.85 0.61 1.85 16 2 N -0.61 -12.62 2.86 -188.73 -0.54 -13.16 16 3 C 0.26 6.66 5.16 -5.19 -0.03 6.63 16 4 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.70 14.47 8.25 -86.92 -0.72 13.75 16 13 O -0.57 -14.05 13.08 5.28 0.07 -13.98 16 14 N -0.67 -10.29 5.34 -14.39 -0.08 -10.37 16 15 C 0.05 0.69 6.90 -83.86 -0.58 0.11 16 16 C 0.06 0.95 10.84 -17.23 -0.19 0.76 16 17 N -0.28 -4.10 12.40 30.70 0.38 -3.72 16 18 N -0.38 -4.02 3.69 -62.21 -0.23 -4.25 16 19 C 0.18 1.10 6.63 -5.20 -0.03 1.06 16 20 C -0.08 -0.52 5.33 -104.53 -0.56 -1.08 16 21 C -0.08 -0.57 9.68 -39.64 -0.38 -0.96 16 22 C -0.07 -0.50 9.76 -39.17 -0.38 -0.88 16 23 C -0.02 -0.18 5.73 -106.93 -0.61 -0.79 16 24 C 0.25 2.46 15.33 -22.48 -0.34 2.12 16 25 N -0.42 -5.04 18.53 41.82 0.78 -4.27 16 26 C -0.07 -0.48 9.76 -39.17 -0.38 -0.87 16 27 C -0.10 -0.61 9.68 -39.64 -0.38 -0.99 16 28 C -0.01 -0.09 11.52 -16.67 -0.19 -0.29 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.19 8.07 -51.93 -0.42 0.78 16 31 H 0.05 0.57 6.36 -51.93 -0.33 0.24 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.40 4.64 6.56 -40.82 -0.27 4.37 16 36 H 0.21 4.05 5.91 -52.48 -0.31 3.74 16 37 H 0.11 0.30 8.01 -51.93 -0.42 -0.12 16 38 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -36.51 382.70 -7.78 -44.29 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.05 Total: 1.48 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -4.59 Total: 7.03 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 1.05 Total: -61.40 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.07 Total: -13.98 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.51 -7.78 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880651186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.770 kcal (2) G-P(sol) polarization free energy of solvation -36.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds