Wall clock time and date at job start Tue Mar 31 2020 22:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99886 * 2 1 4 4 C 1.50700 * 109.46967 * 269.99676 * 3 2 1 5 5 H 1.08000 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00237 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99572 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00039 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47132 * 90.00137 * 8 6 4 10 10 H 1.48501 * 109.46582 * 210.00071 * 8 6 4 11 11 H 1.48502 * 109.47040 * 329.99814 * 8 6 4 12 12 C 1.34775 * 120.00364 * 179.97438 * 2 1 3 13 13 O 1.21602 * 120.00313 * 180.02562 * 12 2 1 14 14 N 1.34777 * 119.99736 * 0.02562 * 12 2 1 15 15 C 1.40849 * 120.00021 * 179.97438 * 14 12 2 16 16 C 1.40236 * 126.07591 * 359.97438 * 15 14 12 17 17 N 1.30832 * 108.34137 * 179.73648 * 16 15 14 18 18 N 1.40068 * 108.36625 * 0.44217 * 17 16 15 19 19 C 1.46501 * 126.06010 * 179.81657 * 18 17 16 20 20 C 1.50696 * 109.47297 * 304.68809 * 19 18 17 21 21 C 1.38365 * 119.84487 * 89.99842 * 20 19 18 22 22 C 1.37947 * 120.14939 * 180.02562 * 21 20 19 23 23 C 1.39629 * 119.84839 * 359.97438 * 22 21 20 24 24 C 1.43205 * 120.15217 * 180.02562 * 23 22 21 25 25 N 9.00258 * 144.02482 * 270.00663 * 15 1 2 26 26 C 1.39630 * 119.69955 * 0.27680 * 23 22 21 27 27 C 1.37951 * 119.84583 * 359.44533 * 26 23 22 28 28 C 1.35729 * 126.07621 * 179.97438 * 15 14 12 29 29 H 1.09001 * 109.47014 * 270.00314 * 1 2 3 30 30 H 1.08998 * 109.47437 * 30.00469 * 1 2 3 31 31 H 1.09007 * 109.46893 * 150.00338 * 1 2 3 32 32 H 1.08995 * 109.47437 * 29.99532 * 3 2 1 33 33 H 1.09003 * 109.46906 * 150.00171 * 3 2 1 34 34 H 0.97006 * 120.00134 * 179.97438 * 7 6 4 35 35 H 0.96997 * 120.00416 * 359.97438 * 14 12 2 36 36 H 1.08003 * 125.82737 * 0.02562 * 16 15 14 37 37 H 1.09004 * 109.47020 * 184.68933 * 19 18 17 38 38 H 1.08995 * 109.47230 * 64.69153 * 19 18 17 39 39 H 1.07993 * 119.92704 * 0.02562 * 21 20 19 40 40 H 1.08003 * 120.07687 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.08232 * 179.69881 * 26 23 22 42 42 H 1.08002 * 119.92831 * 180.25347 * 27 26 23 43 43 H 1.07998 * 126.21355 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1260 2.8780 -1.6729 7 7 3.5532 3.6181 -0.6733 8 14 3.4367 3.4174 -3.4341 9 1 2.3063 4.2600 -3.9004 10 1 4.6968 4.2008 -3.4967 11 1 3.5542 2.2204 -4.3050 12 6 2.1389 -1.1671 0.0005 13 8 3.3549 -1.1671 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1693 -3.5541 0.0005 16 6 3.5638 -3.7025 0.0000 17 7 3.8418 -4.9810 0.0059 18 7 2.6366 -5.6947 0.0001 19 6 2.4981 -7.1531 0.0000 20 6 3.2614 -7.7302 -1.1642 21 6 4.5891 -8.0869 -1.0081 22 6 5.2940 -8.6152 -2.0697 23 6 4.6644 -8.7902 -3.3037 24 6 5.3898 -9.3385 -4.4100 25 7 5.9655 -9.7733 -5.2870 26 6 3.3258 -8.4232 -3.4556 27 6 2.6311 -7.9014 -2.3840 28 6 1.6189 -4.7948 0.0010 29 1 -0.3633 0.0001 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5138 34 1 4.0301 4.4441 -0.8505 35 1 0.4951 -2.3344 0.0005 36 1 4.2851 -2.8987 -0.0001 37 1 1.4445 -7.4180 -0.0892 38 1 2.8963 -7.5560 0.9312 39 1 5.0747 -7.9514 -0.0531 40 1 6.3302 -8.8935 -1.9465 41 1 2.8341 -8.5513 -4.4086 42 1 1.5945 -7.6209 -2.4989 43 1 0.5637 -5.0247 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880651186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:14 Heat of formation + Delta-G solvation = 101.573411 kcal Electronic energy + Delta-G solvation = -27191.727478 eV Core-core repulsion = 23238.823916 eV Total energy + Delta-G solvation = -3952.903561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.22578 -40.81107 -40.32967 -37.71381 -36.68077 -35.81677 -34.83832 -34.30997 -32.06455 -31.89506 -30.38045 -29.29245 -27.61193 -27.01565 -24.92613 -23.86251 -23.75063 -22.25418 -21.87366 -20.46349 -19.94507 -18.81120 -18.58728 -18.24878 -17.11296 -16.98398 -16.63365 -16.43476 -16.25372 -15.57747 -15.52015 -15.48696 -15.14012 -15.00617 -14.56784 -14.46720 -14.40127 -14.07374 -13.97776 -13.80349 -13.65476 -13.40714 -13.21930 -13.17654 -13.06224 -12.78959 -12.62245 -12.47900 -12.15075 -12.01416 -11.74561 -11.59198 -11.55441 -10.87697 -10.59404 -10.21580 -9.95792 -9.90281 -9.45219 -8.48304 -8.15670 -6.31473 -0.35476 0.41381 0.96929 1.38276 1.41778 1.48925 1.52387 1.53199 1.76850 1.88747 2.11765 2.40619 2.60715 2.79176 2.90752 3.11559 3.25522 3.59392 3.80970 3.95711 4.04169 4.12405 4.34401 4.35403 4.39330 4.54379 4.64540 4.67079 4.75590 4.77170 4.82613 4.96124 5.05723 5.06562 5.18995 5.26515 5.31838 5.35082 5.52062 5.62188 5.83484 5.86689 5.96614 6.12126 6.17056 6.28433 6.35567 6.77256 6.80866 7.23903 7.35891 7.79946 8.88820 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.002274 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.417118 B =12309.256143 C =13740.707220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.276 3.724 4 C -0.538 4.538 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.965 3.035 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.693 3.307 13 O -0.626 6.626 14 N -0.647 5.647 15 C -0.001 4.001 16 C 0.020 3.980 17 N -0.302 5.302 18 N -0.364 5.364 19 C 0.171 3.829 20 C -0.082 4.082 21 C -0.094 4.094 22 C -0.077 4.077 23 C -0.039 4.039 24 C 0.277 3.723 25 N -0.468 5.468 26 C -0.075 4.075 27 C -0.097 4.097 28 C 0.041 3.959 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.029 0.971 33 H -0.001 1.001 34 H 0.266 0.734 35 H 0.421 0.579 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.163 0.837 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 -27.412 2.693 30.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.358 5.358 3 C 0.154 3.846 4 C -0.577 4.577 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.395 3.605 13 O -0.506 6.506 14 N -0.299 5.299 15 C -0.106 4.106 16 C -0.166 4.166 17 N -0.125 5.125 18 N -0.149 5.149 19 C 0.052 3.948 20 C -0.084 4.084 21 C -0.112 4.112 22 C -0.098 4.098 23 C -0.043 4.043 24 C -0.037 4.037 25 N -0.144 5.144 26 C -0.095 4.095 27 C -0.116 4.116 28 C -0.107 4.107 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.075 0.925 35 H 0.260 0.740 36 H 0.182 0.818 37 H 0.172 0.828 38 H 0.128 0.872 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.180 0.820 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -9.747 -28.849 1.403 30.484 hybrid contribution -0.260 1.768 -0.574 1.877 sum -10.007 -27.081 0.830 28.883 Atomic orbital electron populations 1.21888 0.77928 1.03937 1.02580 1.47287 1.07920 1.04749 1.75822 1.18667 0.90984 0.79128 0.95791 1.21717 1.36525 1.06229 0.93222 0.93082 1.25809 0.95074 0.96564 1.01678 1.70044 1.39104 1.14805 1.32838 0.85458 0.78035 0.78088 0.79460 1.18710 1.20835 1.20100 1.16036 0.84963 0.81091 0.78427 1.90751 1.14121 1.86324 1.59431 1.41756 1.09558 1.01161 1.77382 1.17822 0.91357 0.86012 1.15397 1.24178 0.96307 0.94073 1.02049 1.77282 1.06709 1.04012 1.24490 1.48659 1.02664 1.06499 1.57087 1.21043 1.04121 0.72140 0.97482 1.20324 0.94786 0.97421 0.95859 1.21196 0.93820 0.96648 0.99571 1.21328 1.00661 0.96954 0.90819 1.16189 0.94000 1.04990 0.89099 1.26050 0.92551 0.92390 0.92741 1.81266 1.10028 1.11303 1.11758 1.21396 0.91614 0.96009 1.00527 1.21313 1.01771 0.97521 0.90968 1.22421 0.96515 0.85960 1.05786 0.91025 0.91127 0.89253 0.95330 0.98243 0.92486 0.73982 0.81752 0.82782 0.87247 0.84039 0.84076 0.83394 0.81989 0.75274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.16 10.20 127.77 1.30 3.46 16 2 N -0.62 -25.98 2.86 -869.29 -2.48 -28.47 16 3 C 0.28 14.81 5.16 85.63 0.44 15.26 16 4 C -0.54 -31.02 9.39 25.60 0.24 -30.78 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.44 5.46 84.66 0.46 0.90 16 7 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 8 Si 0.96 45.34 29.54 68.60 2.03 47.36 16 9 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 C 0.69 29.26 8.25 179.05 1.48 30.74 16 13 O -0.63 -32.94 13.08 -4.04 -0.05 -33.00 16 14 N -0.65 -18.82 5.34 -317.70 -1.70 -20.52 16 15 C 0.00 -0.03 6.90 37.59 0.26 0.23 16 16 C 0.02 0.71 10.84 85.33 0.92 1.63 16 17 N -0.30 -8.58 12.40 -56.78 -0.70 -9.28 16 18 N -0.36 -6.22 3.69 -350.72 -1.29 -7.51 16 19 C 0.17 1.14 6.63 85.63 0.57 1.71 16 20 C -0.08 -0.80 5.33 -19.81 -0.11 -0.90 16 21 C -0.09 -1.12 9.68 22.23 0.22 -0.90 16 22 C -0.08 -1.00 9.76 22.54 0.22 -0.78 16 23 C -0.04 -0.56 5.73 -21.36 -0.12 -0.68 16 24 C 0.28 5.33 15.33 88.34 1.35 6.68 16 25 N -0.47 -11.55 18.53 19.00 0.35 -11.20 16 26 C -0.08 -0.79 9.76 22.54 0.22 -0.57 16 27 C -0.10 -0.78 9.68 22.23 0.22 -0.57 16 28 C 0.04 0.66 11.52 83.49 0.96 1.62 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 31 H 0.09 1.71 6.36 -2.38 -0.02 1.69 16 32 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 33 H 0.00 -0.04 7.42 -2.39 -0.02 -0.05 16 34 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 35 H 0.42 8.18 6.56 -92.71 -0.61 7.57 16 36 H 0.17 7.17 5.91 -2.91 -0.02 7.15 16 37 H 0.15 -0.35 8.01 -2.38 -0.02 -0.37 16 38 H 0.11 0.51 8.08 -2.39 -0.02 0.49 16 39 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 40 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 42 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 43 H 0.23 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -88.26 382.70 5.52 -82.74 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.46 Total: 8.77 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 8.64 Total: 27.05 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -5.54 Total: -132.93 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.05 Total: -33.00 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -88.26 5.52 -82.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880651186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.316 kcal (2) G-P(sol) polarization free energy of solvation -88.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds