Wall clock time and date at job start Tue Mar 31 2020 23:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48500 * 109.47214 * 239.99702 * 3 2 1 5 5 H 1.48501 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47200 * 119.99685 * 3 2 1 7 7 C 1.39934 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99586 * 195.39234 * 7 2 1 9 9 C 1.41402 * 120.00118 * 15.38598 * 7 2 1 10 10 C 1.40778 * 120.20927 * 24.64796 * 9 7 2 11 11 C 1.37640 * 119.88892 * 179.97438 * 10 9 7 12 12 C 1.38538 * 120.31582 * 0.02800 * 11 10 9 13 13 C 1.39246 * 120.43070 * 359.67099 * 12 11 10 14 14 N 1.39950 * 119.94559 * 180.32644 * 13 12 11 15 15 C 1.34772 * 120.00430 * 35.88184 * 14 13 12 16 16 O 1.21590 * 120.00030 * 355.47785 * 15 14 13 17 17 N 1.34774 * 120.00625 * 175.47478 * 15 14 13 18 18 C 1.46502 * 120.00643 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47455 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.50147 * 304.92407 * 19 18 17 21 21 C 1.53045 * 109.50435 * 64.99749 * 19 18 17 22 22 N 1.46846 * 109.52088 * 179.12091 * 21 19 18 23 23 C 1.46844 * 111.19900 * 298.25796 * 22 21 19 24 24 C 1.53041 * 109.52584 * 61.74334 * 23 22 21 25 25 C 1.53117 * 109.27562 * 300.82146 * 24 23 22 26 26 F 1.39895 * 109.52764 * 297.74388 * 25 24 23 27 27 F 1.39905 * 109.51901 * 177.55417 * 25 24 23 28 28 C 1.38270 * 120.10294 * 0.60755 * 13 12 11 29 29 H 0.97001 * 119.99814 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.05655 * 359.95767 * 10 9 7 31 31 H 1.07998 * 119.84393 * 180.02562 * 11 10 9 32 32 H 1.08001 * 119.77947 * 179.97438 * 12 11 10 33 33 H 0.97010 * 119.99836 * 215.87793 * 14 13 12 34 34 H 0.97002 * 119.99800 * 0.02562 * 17 15 14 35 35 H 1.09000 * 109.46623 * 300.00494 * 18 17 15 36 36 H 1.08997 * 109.46945 * 60.00047 * 18 17 15 37 37 H 1.09002 * 109.46005 * 299.13921 * 21 19 18 38 38 H 1.09001 * 109.45593 * 59.11542 * 21 19 18 39 39 H 1.00900 * 110.99179 * 174.16383 * 22 21 19 40 40 H 1.08993 * 109.46323 * 181.76109 * 23 22 21 41 41 H 1.09009 * 109.46304 * 301.73041 * 23 22 21 42 42 H 1.08999 * 109.49933 * 60.75594 * 24 23 22 43 43 H 1.08989 * 109.50432 * 180.83878 * 24 23 22 44 44 H 1.07997 * 120.16238 * 179.69800 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0589 -1.2285 0.2488 9 6 1.3389 -2.4147 -0.3238 10 6 0.1799 -2.3873 -1.1225 11 6 -0.4658 -3.5621 -1.4346 12 6 0.0190 -4.7724 -0.9661 13 6 1.1678 -4.8154 -0.1803 14 7 1.6525 -6.0442 0.2819 15 6 1.5573 -7.1415 -0.4948 16 8 0.9774 -7.0825 -1.5619 17 7 2.1048 -8.3041 -0.0889 18 6 2.0008 -9.4970 -0.9330 19 6 2.6999 -10.6712 -0.2450 20 1 3.7278 -10.3954 -0.0094 21 6 1.9568 -11.0231 1.0459 22 7 2.6151 -12.1635 1.6958 23 6 2.5821 -13.3550 0.8381 24 6 3.3439 -13.0728 -0.4589 25 6 2.6963 -11.8858 -1.1774 26 9 1.3789 -12.2085 -1.5198 27 9 3.4222 -11.5880 -2.3357 28 6 1.8271 -3.6454 0.1487 29 1 -0.4850 0.8401 0.0004 30 1 -0.2021 -1.4461 -1.4894 31 1 -1.3546 -3.5404 -2.0477 32 1 -0.4948 -5.6889 -1.2159 33 1 2.0570 -6.1062 1.1614 34 1 2.5671 -8.3513 0.7625 35 1 0.9500 -9.7411 -1.0891 36 1 2.4758 -9.3040 -1.8948 37 1 1.9698 -10.1649 1.7178 38 1 0.9251 -11.2849 0.8110 39 1 2.2016 -12.3545 2.5961 40 1 3.0493 -14.1906 1.3592 41 1 1.5473 -13.6058 0.6043 42 1 4.3821 -12.8354 -0.2268 43 1 3.3065 -13.9523 -1.1016 44 1 2.7154 -3.6771 0.7621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886958789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:39 Heat of formation + Delta-G solvation = -107.810298 kcal Electronic energy + Delta-G solvation = -28873.036598 eV Core-core repulsion = 24460.364291 eV Total energy + Delta-G solvation = -4412.672307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.34087 -47.30407 -40.04783 -38.68962 -37.33134 -35.26431 -34.30140 -33.08677 -31.81195 -31.61744 -29.77301 -28.15247 -26.09218 -25.17729 -24.21851 -22.81862 -21.46024 -20.86088 -20.59958 -20.10409 -18.35348 -17.72538 -17.64502 -16.97108 -16.76412 -16.39978 -15.89742 -15.68192 -15.23131 -15.03676 -14.55608 -14.50387 -14.23578 -14.12495 -13.94387 -13.64540 -13.59026 -13.21631 -12.99131 -12.86862 -12.77771 -12.57745 -12.31795 -12.16897 -11.77240 -11.59884 -11.49889 -11.29604 -11.09674 -10.82023 -10.65330 -10.51317 -10.20524 -9.69261 -9.51044 -9.20522 -9.12574 -9.02167 -8.86715 -7.41047 -6.84200 -6.69023 -4.33051 2.70771 2.86203 2.92485 3.09012 3.11778 3.27300 3.33074 3.48179 3.59624 3.68005 3.84566 3.96490 4.02947 4.28323 4.53577 4.55418 4.66444 4.70288 4.79436 4.91950 4.96048 5.14682 5.22337 5.30171 5.38981 5.58139 5.68365 5.75445 6.28651 6.32575 6.42249 6.63634 6.69606 6.75145 6.89031 6.99850 7.07791 7.28579 7.38751 7.66435 7.85358 8.07730 8.14681 8.28633 8.43045 8.66976 8.91380 8.95153 9.05476 10.24738 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028473 B = 0.001973 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.135338 B =14189.101726 C =14421.485430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.120 3.880 10 C -0.166 4.166 11 C -0.098 4.098 12 C -0.223 4.223 13 C 0.166 3.834 14 N -0.679 5.679 15 C 0.700 3.300 16 O -0.569 6.569 17 N -0.750 5.750 18 C 0.144 3.856 19 C -0.135 4.135 20 H 0.116 0.884 21 C 0.061 3.939 22 N -0.690 5.690 23 C 0.056 3.944 24 C -0.155 4.155 25 C 0.296 3.704 26 F -0.196 7.196 27 F -0.195 7.195 28 C -0.246 4.246 29 H 0.280 0.720 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.396 0.604 34 H 0.394 0.606 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.353 0.647 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -23.946 4.967 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.117 3.883 10 C -0.186 4.186 11 C -0.118 4.118 12 C -0.244 4.244 13 C 0.074 3.926 14 N -0.325 5.325 15 C 0.400 3.600 16 O -0.445 6.445 17 N -0.407 5.407 18 C 0.019 3.981 19 C -0.155 4.155 20 H 0.134 0.866 21 C -0.069 4.069 22 N -0.322 5.322 23 C -0.074 4.074 24 C -0.193 4.193 25 C 0.259 3.741 26 F -0.177 7.177 27 F -0.176 7.176 28 C -0.268 4.268 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.229 0.771 34 H 0.228 0.772 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.173 0.827 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.597 -23.574 3.734 24.516 hybrid contribution -0.144 0.421 0.786 0.903 sum 5.453 -23.153 4.520 24.212 Atomic orbital electron populations 1.69813 1.07472 1.29105 1.35953 1.25883 0.94760 1.01200 0.92351 0.86359 0.80064 0.80317 0.79872 1.18895 1.20405 1.19121 1.19467 0.97113 0.90830 1.41976 0.90629 1.17356 0.91323 0.91302 0.88308 1.21445 0.98882 0.96933 1.01343 1.20622 0.98662 0.92827 0.99644 1.20477 0.98423 0.97354 1.08136 1.17220 0.93986 0.81964 0.99413 1.42562 1.63674 1.07228 1.19049 1.15926 0.79964 0.80029 0.84058 1.90946 1.46912 1.83786 1.22859 1.45009 1.62363 1.09052 1.24316 1.21044 1.01238 0.82051 0.93816 1.22440 1.04099 0.93775 0.95225 0.86635 1.21968 0.95662 0.94807 0.94449 1.60292 1.60175 1.05330 1.06421 1.21896 0.99233 0.93318 0.92910 1.22602 1.02246 0.97211 0.97274 1.20989 0.75209 0.95981 0.81938 1.93014 1.37605 1.93856 1.93273 1.93044 1.77544 1.94446 1.52552 1.20674 1.03627 0.91757 1.10754 0.90925 0.86046 0.89090 0.87545 0.77070 0.77232 0.90782 0.90496 0.88989 0.93432 0.82749 0.89126 0.93838 0.87768 0.88792 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.75 10.82 55.55 0.60 -20.15 16 2 C 0.08 1.89 5.19 -17.34 -0.09 1.80 16 3 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.34 9.06 -37.74 -0.34 -12.68 16 8 H 0.08 1.92 7.89 -52.49 -0.41 1.51 16 9 C 0.12 3.24 5.58 -106.85 -0.60 2.64 16 10 C -0.17 -4.45 8.69 -38.84 -0.34 -4.79 16 11 C -0.10 -2.46 10.02 -39.69 -0.40 -2.86 16 12 C -0.22 -5.47 8.70 -39.10 -0.34 -5.81 16 13 C 0.17 3.83 6.27 -83.76 -0.53 3.30 16 14 N -0.68 -12.18 5.34 -14.28 -0.08 -12.25 16 15 C 0.70 12.43 8.40 -86.93 -0.73 11.70 16 16 O -0.57 -12.73 13.82 5.29 0.07 -12.66 16 17 N -0.75 -9.08 5.30 -65.23 -0.35 -9.43 16 18 C 0.14 1.66 4.81 -4.04 -0.02 1.64 16 19 C -0.14 -1.10 2.03 -90.54 -0.18 -1.29 16 20 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 21 C 0.06 0.40 5.58 -3.83 -0.02 0.38 16 22 N -0.69 -3.69 6.85 -113.81 -0.78 -4.47 16 23 C 0.06 0.28 6.44 -3.83 -0.02 0.26 16 24 C -0.15 -0.92 5.62 -26.65 -0.15 -1.07 16 25 C 0.30 2.61 1.65 -26.61 -0.04 2.57 16 26 F -0.20 -2.08 15.71 2.25 0.04 -2.04 16 27 F -0.20 -2.12 16.58 2.25 0.04 -2.09 16 28 C -0.25 -6.01 9.71 -38.69 -0.38 -6.39 16 29 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 30 H 0.12 3.33 6.07 -52.48 -0.32 3.01 16 31 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.11 2.62 6.27 -52.49 -0.33 2.29 16 33 H 0.40 5.53 8.84 -40.82 -0.36 5.17 16 34 H 0.39 3.41 7.68 -40.82 -0.31 3.10 16 35 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 36 H 0.08 1.03 7.75 -51.93 -0.40 0.63 16 37 H 0.09 0.54 7.20 -51.93 -0.37 0.17 16 38 H 0.05 0.36 7.87 -51.93 -0.41 -0.04 16 39 H 0.35 1.34 8.90 -39.29 -0.35 0.99 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.04 0.24 7.88 -51.92 -0.41 -0.17 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.47 8.14 -51.94 -0.42 0.05 16 44 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 364.28 15.07 5.49 5.49 Total: -1.00 -32.43 364.28 -9.93 -42.36 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.76 Total: 12.08 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -4.18 Total: -10.60 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.60 Total: -46.30 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.07 Total: -12.66 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.07 Total: -4.13 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.43 -9.93 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886958789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.450 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds