Wall clock time and date at job start Tue Mar 31 2020 23:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48500 * 109.47214 * 239.99702 * 3 2 1 5 5 H 1.48501 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47200 * 119.99685 * 3 2 1 7 7 C 1.39934 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99586 * 195.39234 * 7 2 1 9 9 C 1.41402 * 120.00118 * 15.38598 * 7 2 1 10 10 C 1.40778 * 120.20927 * 24.64796 * 9 7 2 11 11 C 1.37640 * 119.88892 * 179.97438 * 10 9 7 12 12 C 1.38538 * 120.31582 * 0.02800 * 11 10 9 13 13 C 1.39246 * 120.43070 * 359.67099 * 12 11 10 14 14 N 1.39950 * 119.94559 * 180.32644 * 13 12 11 15 15 C 1.34772 * 120.00430 * 35.88184 * 14 13 12 16 16 O 1.21590 * 120.00030 * 355.47785 * 15 14 13 17 17 N 1.34774 * 120.00625 * 175.47478 * 15 14 13 18 18 C 1.46502 * 120.00643 * 179.97438 * 17 15 14 19 19 C 1.52996 * 109.47455 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.50147 * 304.92407 * 19 18 17 21 21 C 1.53045 * 109.50435 * 64.99749 * 19 18 17 22 22 N 1.46846 * 109.52088 * 179.12091 * 21 19 18 23 23 C 1.46844 * 111.19900 * 298.25796 * 22 21 19 24 24 C 1.53041 * 109.52584 * 61.74334 * 23 22 21 25 25 C 1.53117 * 109.27562 * 300.82146 * 24 23 22 26 26 F 1.39895 * 109.52764 * 297.74388 * 25 24 23 27 27 F 1.39905 * 109.51901 * 177.55417 * 25 24 23 28 28 C 1.38270 * 120.10294 * 0.60755 * 13 12 11 29 29 H 0.97001 * 119.99814 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.05655 * 359.95767 * 10 9 7 31 31 H 1.07998 * 119.84393 * 180.02562 * 11 10 9 32 32 H 1.08001 * 119.77947 * 179.97438 * 12 11 10 33 33 H 0.97010 * 119.99836 * 215.87793 * 14 13 12 34 34 H 0.97002 * 119.99800 * 0.02562 * 17 15 14 35 35 H 1.09000 * 109.46623 * 300.00494 * 18 17 15 36 36 H 1.08997 * 109.46945 * 60.00047 * 18 17 15 37 37 H 1.09002 * 109.46005 * 299.13921 * 21 19 18 38 38 H 1.09001 * 109.45593 * 59.11542 * 21 19 18 39 39 H 1.00900 * 110.99179 * 174.16383 * 22 21 19 40 40 H 1.08993 * 109.46323 * 181.76109 * 23 22 21 41 41 H 1.09009 * 109.46304 * 301.73041 * 23 22 21 42 42 H 1.08999 * 109.49933 * 60.75594 * 24 23 22 43 43 H 1.08989 * 109.50432 * 180.83878 * 24 23 22 44 44 H 1.07997 * 120.16238 * 179.69800 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0589 -1.2285 0.2488 9 6 1.3389 -2.4147 -0.3238 10 6 0.1799 -2.3873 -1.1225 11 6 -0.4658 -3.5621 -1.4346 12 6 0.0190 -4.7724 -0.9661 13 6 1.1678 -4.8154 -0.1803 14 7 1.6525 -6.0442 0.2819 15 6 1.5573 -7.1415 -0.4948 16 8 0.9774 -7.0825 -1.5619 17 7 2.1048 -8.3041 -0.0889 18 6 2.0008 -9.4970 -0.9330 19 6 2.6999 -10.6712 -0.2450 20 1 3.7278 -10.3954 -0.0094 21 6 1.9568 -11.0231 1.0459 22 7 2.6151 -12.1635 1.6958 23 6 2.5821 -13.3550 0.8381 24 6 3.3439 -13.0728 -0.4589 25 6 2.6963 -11.8858 -1.1774 26 9 1.3789 -12.2085 -1.5198 27 9 3.4222 -11.5880 -2.3357 28 6 1.8271 -3.6454 0.1487 29 1 -0.4850 0.8401 0.0004 30 1 -0.2021 -1.4461 -1.4894 31 1 -1.3546 -3.5404 -2.0477 32 1 -0.4948 -5.6889 -1.2159 33 1 2.0570 -6.1062 1.1614 34 1 2.5671 -8.3513 0.7625 35 1 0.9500 -9.7411 -1.0891 36 1 2.4758 -9.3040 -1.8948 37 1 1.9698 -10.1649 1.7178 38 1 0.9251 -11.2849 0.8110 39 1 2.2016 -12.3545 2.5961 40 1 3.0493 -14.1906 1.3592 41 1 1.5473 -13.6058 0.6043 42 1 4.3821 -12.8354 -0.2268 43 1 3.3065 -13.9523 -1.1016 44 1 2.7154 -3.6771 0.7621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886958789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:39 Heat of formation + Delta-G solvation = -130.416257 kcal Electronic energy + Delta-G solvation = -28874.016866 eV Core-core repulsion = 24460.364291 eV Total energy + Delta-G solvation = -4413.652574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.10096 -48.08719 -41.50366 -39.53474 -38.92514 -36.46526 -35.94078 -34.86899 -32.68436 -32.20574 -31.73679 -29.84186 -27.19388 -26.96088 -24.81632 -23.76388 -22.90742 -22.65572 -21.79866 -21.14597 -19.63295 -19.43612 -18.48747 -17.85169 -17.57703 -17.35759 -17.00014 -16.90451 -16.80076 -16.41646 -15.97174 -15.82756 -15.43825 -14.98378 -14.92347 -14.78555 -14.63092 -14.42348 -14.37530 -14.04425 -13.89426 -13.54448 -13.32249 -13.18124 -13.11478 -12.96264 -12.79868 -12.49531 -12.36763 -12.35307 -12.11165 -11.95053 -11.53216 -11.45708 -11.25551 -11.02094 -10.72224 -10.23269 -9.55740 -9.38959 -8.69144 -8.58631 -6.34046 0.96635 1.00082 1.41365 1.52018 1.52745 1.59914 2.14187 2.23970 2.63747 2.79187 2.94287 2.98067 3.14307 3.32840 3.45684 3.71416 3.76170 3.88522 4.07256 4.22808 4.34655 4.43099 4.47939 4.55653 4.57246 4.68650 4.73268 4.84413 4.88994 5.02180 5.04206 5.05584 5.13633 5.21522 5.29522 5.36824 5.75536 5.78837 5.83463 6.05630 6.10997 6.19763 6.37219 6.38737 6.70536 6.95216 6.99440 7.08453 7.54438 8.37200 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028473 B = 0.001973 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.135338 B =14189.101726 C =14421.485430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.494 4.494 8 H 0.080 0.920 9 C 0.092 3.908 10 C -0.194 4.194 11 C -0.101 4.101 12 C -0.238 4.238 13 C 0.179 3.821 14 N -0.668 5.668 15 C 0.698 3.302 16 O -0.617 6.617 17 N -0.720 5.720 18 C 0.146 3.854 19 C -0.124 4.124 20 H 0.131 0.869 21 C 0.064 3.936 22 N -0.687 5.687 23 C 0.056 3.944 24 C -0.150 4.150 25 C 0.283 3.717 26 F -0.210 7.210 27 F -0.210 7.210 28 C -0.254 4.254 29 H 0.288 0.712 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.418 0.582 34 H 0.416 0.584 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.036 0.964 39 H 0.365 0.635 40 H 0.114 0.886 41 H 0.036 0.964 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 -24.971 6.780 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.524 4.524 8 H 0.098 0.902 9 C 0.089 3.911 10 C -0.214 4.214 11 C -0.120 4.120 12 C -0.259 4.259 13 C 0.085 3.915 14 N -0.317 5.317 15 C 0.399 3.601 16 O -0.496 6.496 17 N -0.378 5.378 18 C 0.021 3.979 19 C -0.144 4.144 20 H 0.149 0.851 21 C -0.066 4.066 22 N -0.320 5.320 23 C -0.074 4.074 24 C -0.188 4.188 25 C 0.246 3.754 26 F -0.191 7.191 27 F -0.191 7.191 28 C -0.276 4.276 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.255 0.745 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.054 0.946 39 H 0.186 0.814 40 H 0.132 0.868 41 H 0.055 0.945 42 H 0.133 0.867 43 H 0.121 0.879 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.380 -24.670 5.618 26.356 hybrid contribution -0.715 0.607 0.215 0.962 sum 6.665 -24.063 5.833 25.641 Atomic orbital electron populations 1.69880 1.09008 1.30518 1.35838 1.26793 0.95542 1.04596 0.91251 0.85213 0.78678 0.75510 0.80054 1.18714 1.19396 1.18060 1.19766 0.97533 0.91779 1.43309 0.90189 1.17754 0.91795 0.92723 0.88780 1.21380 1.00110 0.96846 1.03108 1.20823 0.99024 0.92666 0.99516 1.20589 0.99363 0.96921 1.09019 1.17189 0.92920 0.83540 0.97832 1.42303 1.63481 1.05794 1.20075 1.16090 0.79738 0.80951 0.83368 1.90922 1.49021 1.84683 1.24999 1.44697 1.60788 1.07377 1.24981 1.21025 1.00661 0.82761 0.93477 1.22383 1.04566 0.91957 0.95492 0.85119 1.21914 0.94835 0.96001 0.93841 1.60291 1.59821 1.05001 1.06865 1.21968 0.98960 0.93823 0.92601 1.22644 1.02531 0.96086 0.97520 1.21486 0.74728 0.97556 0.81599 1.92986 1.38738 1.94006 1.93420 1.93013 1.77815 1.94683 1.53635 1.20840 1.04269 0.91459 1.11049 0.90179 0.87531 0.87586 0.87772 0.74506 0.74647 0.92295 0.92534 0.87818 0.94603 0.81442 0.86824 0.94536 0.86696 0.87861 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.61 10.82 21.82 0.24 -43.37 16 2 C 0.03 1.66 5.19 85.25 0.44 2.10 16 3 Si 0.98 38.13 29.59 68.60 2.03 40.16 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.49 -26.58 9.06 23.46 0.21 -26.37 16 8 H 0.08 4.08 7.89 -2.91 -0.02 4.05 16 9 C 0.09 5.08 5.58 -21.31 -0.12 4.96 16 10 C -0.19 -10.76 8.69 22.75 0.20 -10.56 16 11 C -0.10 -5.20 10.02 22.20 0.22 -4.98 16 12 C -0.24 -11.83 8.70 22.58 0.20 -11.64 16 13 C 0.18 8.21 6.27 38.09 0.24 8.45 16 14 N -0.67 -23.09 5.34 -317.34 -1.69 -24.78 16 15 C 0.70 24.21 8.40 179.06 1.50 25.72 16 16 O -0.62 -27.85 13.82 -4.00 -0.06 -27.91 16 17 N -0.72 -16.32 5.30 -478.54 -2.53 -18.85 16 18 C 0.15 3.29 4.81 86.38 0.42 3.71 16 19 C -0.12 -1.82 2.03 -10.74 -0.02 -1.84 16 20 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 21 C 0.06 0.71 5.58 86.33 0.48 1.19 16 22 N -0.69 -5.31 6.85 -513.99 -3.52 -8.83 16 23 C 0.06 0.41 6.44 86.33 0.56 0.96 16 24 C -0.15 -1.45 5.62 30.65 0.17 -1.28 16 25 C 0.28 4.70 1.65 30.67 0.05 4.75 16 26 F -0.21 -4.41 15.71 44.97 0.71 -3.71 16 27 F -0.21 -4.50 16.58 44.97 0.75 -3.76 16 28 C -0.25 -12.41 9.71 22.85 0.22 -12.18 16 29 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 30 H 0.11 6.10 6.07 -2.91 -0.02 6.09 16 31 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 32 H 0.10 5.22 6.27 -2.91 -0.02 5.20 16 33 H 0.42 10.66 8.84 -92.70 -0.82 9.84 16 34 H 0.42 5.97 7.68 -92.71 -0.71 5.26 16 35 H 0.06 1.54 7.90 -2.39 -0.02 1.52 16 36 H 0.06 1.54 7.75 -2.39 -0.02 1.52 16 37 H 0.10 0.90 7.20 -2.39 -0.02 0.89 16 38 H 0.04 0.50 7.87 -2.39 -0.02 0.48 16 39 H 0.36 1.63 8.90 -89.69 -0.80 0.83 16 40 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.04 0.34 7.88 -2.38 -0.02 0.32 16 42 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -72.42 364.28 -0.56 -72.99 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -1.25 Total: 35.06 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.77 Total: -17.01 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -7.51 Total: -95.83 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.06 Total: -27.91 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 1.45 Total: -7.47 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -72.42 -0.56 -72.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886958789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.427 kcal (2) G-P(sol) polarization free energy of solvation -72.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds