Wall clock time and date at job start Tue Mar 31 2020 22:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00568 * 2 1 4 4 H 1.48500 * 109.46866 * 269.99787 * 3 2 1 5 5 H 1.48506 * 109.47119 * 29.99451 * 3 2 1 6 6 H 1.48499 * 109.47548 * 150.00016 * 3 2 1 7 7 C 1.38818 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99910 * 163.06219 * 7 2 1 9 9 N 1.36940 * 120.00101 * 343.07347 * 7 2 1 10 10 C 1.46932 * 120.62607 * 331.83390 * 9 7 2 11 11 C 1.53196 * 108.77415 * 233.62950 * 10 9 7 12 12 C 1.53033 * 109.31210 * 305.36820 * 11 10 9 13 13 N 1.46506 * 109.45807 * 181.38198 * 12 11 10 14 14 C 1.38198 * 119.99469 * 154.69506 * 13 12 11 15 15 N 1.31381 * 120.08572 * 0.28180 * 14 13 12 16 16 C 1.35620 * 121.13020 * 180.02562 * 15 14 13 17 17 C 1.40177 * 119.91357 * 179.97438 * 16 15 14 18 18 C 1.36496 * 120.05364 * 180.02562 * 17 16 15 19 19 C 1.38755 * 120.61715 * 359.97438 * 18 17 16 20 20 C 1.37823 * 120.42469 * 359.97438 * 19 18 17 21 21 C 1.39066 * 119.88828 * 0.06712 * 20 19 18 22 22 N 1.38339 * 120.41755 * 179.97438 * 21 20 19 23 23 N 1.28602 * 134.12024 * 0.02562 * 22 21 20 24 24 N 1.28804 * 109.16622 * 179.97438 * 23 22 21 25 25 N 1.29023 * 109.93186 * 359.97438 * 24 23 22 26 26 C 1.32002 * 107.66024 * 359.68676 * 25 24 23 27 27 C 1.53042 * 109.53062 * 61.37129 * 12 11 10 28 28 C 1.46917 * 120.63397 * 151.85373 * 9 7 2 29 29 H 0.97005 * 119.99247 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58969 * 113.84680 * 10 9 7 31 31 H 1.08999 * 109.70842 * 353.48728 * 10 9 7 32 32 H 1.08995 * 109.49624 * 185.41168 * 11 10 9 33 33 H 1.09003 * 109.52115 * 65.33241 * 11 10 9 34 34 H 1.08997 * 109.46310 * 301.35883 * 12 11 10 35 35 H 0.96995 * 120.00365 * 334.97386 * 13 12 11 36 36 H 1.08000 * 119.97273 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.68766 * 180.02562 * 18 17 16 38 38 H 1.08006 * 119.78972 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.05794 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.49559 * 58.57506 * 27 12 11 41 41 H 1.08999 * 109.50096 * 178.67230 * 27 12 11 42 42 H 1.08998 * 109.59164 * 246.15168 * 28 9 7 43 43 H 1.09006 * 109.58510 * 6.44354 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0550 -1.2227 -0.2719 9 7 1.3700 -2.3623 0.3463 10 6 0.2261 -2.3398 1.2683 11 6 0.4981 -3.3181 2.4153 12 6 0.8130 -4.7000 1.8380 13 7 1.0412 -5.6460 2.9332 14 6 0.8271 -6.9968 2.7351 15 7 0.4241 -7.4350 1.5639 16 6 0.2070 -8.7559 1.3463 17 6 -0.2233 -9.1955 0.0867 18 6 -0.4432 -10.5242 -0.1353 19 6 -0.2445 -11.4521 0.8770 20 6 0.1793 -11.0451 2.1237 21 6 0.4084 -9.6959 2.3714 22 7 0.8334 -9.2752 3.6188 23 7 1.0989 -9.8766 4.7241 24 7 1.4638 -9.0072 5.6016 25 7 1.4432 -7.8252 5.0847 26 6 1.0570 -7.9444 3.8280 27 6 2.0683 -4.6164 0.9666 28 6 1.8140 -3.6530 -0.1971 29 1 -0.4849 0.8402 -0.0004 30 1 -0.6770 -2.6410 0.7375 31 1 0.0964 -1.3343 1.6686 32 1 -0.3823 -3.3829 3.0547 33 1 1.3476 -2.9662 3.0006 34 1 -0.0270 -5.0408 1.2328 35 1 1.3387 -5.3238 3.7983 36 1 -0.3809 -8.4822 -0.7088 37 1 -0.7743 -10.8563 -1.1081 38 1 -0.4222 -12.5003 0.6865 39 1 0.3325 -11.7724 2.9071 40 1 2.9031 -4.2518 1.5652 41 1 2.3057 -5.6054 0.5747 42 1 1.0404 -4.0614 -0.8473 43 1 2.7333 -3.5132 -0.7660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892403061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:41 Heat of formation + Delta-G solvation = 204.897178 kcal Electronic energy + Delta-G solvation = -28809.880790 eV Core-core repulsion = 24893.750434 eV Total energy + Delta-G solvation = -3916.130355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.81443 -40.59668 -38.81809 -37.11246 -35.95788 -34.58199 -32.93584 -32.26234 -30.91854 -30.58423 -29.83554 -29.02663 -25.72166 -25.55615 -24.70584 -23.73137 -22.30181 -22.14453 -21.86083 -20.10241 -19.62051 -19.15418 -17.88491 -17.83161 -16.86149 -16.67467 -16.02463 -15.27139 -15.07034 -14.81490 -14.55953 -14.31365 -13.99308 -13.71565 -13.57249 -13.53129 -13.05556 -13.00734 -12.67577 -12.53313 -12.33860 -12.05532 -12.03070 -11.76862 -11.56623 -11.19387 -11.01114 -10.82468 -10.76170 -10.66952 -10.41418 -10.23039 -10.13466 -9.90982 -9.67301 -9.52886 -9.30069 -8.53945 -7.88556 -6.76128 -5.86159 -3.28314 -0.05216 0.10271 1.18182 1.33203 1.64497 2.41904 2.53992 3.15933 3.33980 3.41597 3.43687 3.45522 3.46496 3.95799 4.30136 4.44634 4.46191 4.71266 4.79316 4.83176 4.93047 5.15968 5.20661 5.29567 5.37303 5.39586 5.46337 5.58115 5.72257 5.73137 5.91585 5.95038 6.00290 6.16344 6.22354 6.32791 6.36715 6.41831 6.49407 6.69143 6.84635 6.85278 6.98948 7.22578 7.53754 7.68288 7.74251 8.05672 8.37949 9.14093 9.77069 10.33084 11.22896 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.002722 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.541004 B =10283.301088 C =11351.775431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.176 3.824 11 C -0.150 4.150 12 C 0.155 3.845 13 N -0.663 5.663 14 C 0.504 3.496 15 N -0.530 5.530 16 C 0.179 3.821 17 C -0.093 4.093 18 C -0.079 4.079 19 C -0.124 4.124 20 C -0.077 4.077 21 C 0.026 3.974 22 N -0.204 5.204 23 N -0.087 5.087 24 N -0.056 5.056 25 N -0.255 5.255 26 C 0.133 3.867 27 C -0.139 4.139 28 C 0.150 3.850 29 H 0.255 0.745 30 H 0.023 0.977 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.418 0.582 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.022 0.978 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -21.151 1.967 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.050 3.950 11 C -0.190 4.190 12 C 0.053 3.947 13 N -0.292 5.292 14 C 0.235 3.765 15 N -0.258 5.258 16 C 0.063 3.937 17 C -0.114 4.114 18 C -0.099 4.099 19 C -0.144 4.144 20 C -0.098 4.098 21 C -0.075 4.075 22 N 0.003 4.997 23 N -0.071 5.071 24 N -0.048 5.048 25 N -0.111 5.111 26 C -0.140 4.140 27 C -0.180 4.180 28 C 0.022 3.978 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.255 0.745 36 H 0.169 0.831 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.679 -20.936 2.555 21.158 hybrid contribution 0.487 0.525 0.367 0.804 sum -1.193 -20.411 2.922 20.654 Atomic orbital electron populations 1.70012 1.05260 1.25634 1.53758 1.25048 0.95291 0.98459 1.00711 0.86313 0.79194 0.83595 0.77765 1.21355 1.21532 1.20471 1.19165 0.92602 0.84728 1.41891 0.91640 1.44096 1.35794 1.01699 1.49897 1.20738 0.88951 0.97885 0.87463 1.22625 1.00971 0.94233 1.01209 1.21387 0.99309 0.87571 0.86471 1.45343 1.66039 1.00886 1.16914 1.18776 0.88427 0.85335 0.84004 1.68648 1.26121 1.13568 1.17484 1.18469 0.96165 0.86303 0.92762 1.20701 0.99785 0.96466 0.94453 1.21035 0.96626 0.92483 0.99739 1.21067 1.00774 1.00597 0.91977 1.20833 0.98045 0.92170 0.98715 1.18478 1.11418 0.96618 0.81022 1.45473 1.38229 1.06475 1.09567 1.78831 1.17794 1.21801 0.88634 1.78703 1.13784 0.92651 1.19691 1.75344 1.16887 1.16392 1.02436 1.25187 1.06514 0.86500 0.95757 1.22420 0.96783 0.99875 0.98889 1.20857 0.98056 0.86424 0.92418 0.93540 0.95900 0.88854 0.92412 0.91825 0.88733 0.74458 0.83107 0.84250 0.84392 0.84204 0.92170 0.92409 0.95963 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.09 11.19 55.49 0.62 -24.47 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.25 -6.65 9.58 -15.06 -0.14 -6.80 16 8 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 9 N -0.59 -13.86 2.99 -172.31 -0.52 -14.37 16 10 C 0.18 3.85 5.30 -3.71 -0.02 3.83 16 11 C -0.15 -2.52 5.55 -26.61 -0.15 -2.67 16 12 C 0.15 2.35 2.43 -67.89 -0.16 2.18 16 13 N -0.66 -8.76 5.20 -52.19 -0.27 -9.03 16 14 C 0.50 6.89 7.68 -153.69 -1.18 5.71 16 15 N -0.53 -7.16 9.23 -8.68 -0.08 -7.24 16 16 C 0.18 2.11 6.58 -84.60 -0.56 1.56 16 17 C -0.09 -0.83 9.93 -39.48 -0.39 -1.22 16 18 C -0.08 -0.51 9.96 -40.02 -0.40 -0.90 16 19 C -0.12 -0.79 10.03 -39.54 -0.40 -1.19 16 20 C -0.08 -0.68 9.82 -39.43 -0.39 -1.07 16 21 C 0.03 0.31 6.63 -83.76 -0.56 -0.25 16 22 N -0.20 -2.79 3.69 -8.64 -0.03 -2.82 16 23 N -0.09 -1.24 13.23 60.35 0.80 -0.44 16 24 N -0.06 -0.86 13.41 60.35 0.81 -0.05 16 25 N -0.26 -3.82 12.42 32.19 0.40 -3.42 16 26 C 0.13 1.89 8.12 -154.75 -1.26 0.63 16 27 C -0.14 -2.25 5.67 -26.61 -0.15 -2.40 16 28 C 0.15 2.92 6.52 -3.71 -0.02 2.89 16 29 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.52 7.54 -51.93 -0.39 1.13 16 35 H 0.42 5.00 8.63 -40.82 -0.35 4.65 16 36 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 38 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 39 H 0.14 1.10 8.04 -52.49 -0.42 0.67 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -29.71 358.42 -9.01 -38.71 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.25 Total: 1.48 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -5.86 Total: 0.31 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 1.73 Total: -61.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.71 -9.01 -38.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892403061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.608 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds