Wall clock time and date at job start Tue Mar 31 2020 22:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00568 * 2 1 4 4 H 1.48500 * 109.46866 * 269.99787 * 3 2 1 5 5 H 1.48506 * 109.47119 * 29.99451 * 3 2 1 6 6 H 1.48499 * 109.47548 * 150.00016 * 3 2 1 7 7 C 1.38818 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99910 * 163.06219 * 7 2 1 9 9 N 1.36940 * 120.00101 * 343.07347 * 7 2 1 10 10 C 1.46932 * 120.62607 * 331.83390 * 9 7 2 11 11 C 1.53196 * 108.77415 * 233.62950 * 10 9 7 12 12 C 1.53033 * 109.31210 * 305.36820 * 11 10 9 13 13 N 1.46506 * 109.45807 * 181.38198 * 12 11 10 14 14 C 1.38198 * 119.99469 * 154.69506 * 13 12 11 15 15 N 1.31381 * 120.08572 * 0.28180 * 14 13 12 16 16 C 1.35620 * 121.13020 * 180.02562 * 15 14 13 17 17 C 1.40177 * 119.91357 * 179.97438 * 16 15 14 18 18 C 1.36496 * 120.05364 * 180.02562 * 17 16 15 19 19 C 1.38755 * 120.61715 * 359.97438 * 18 17 16 20 20 C 1.37823 * 120.42469 * 359.97438 * 19 18 17 21 21 C 1.39066 * 119.88828 * 0.06712 * 20 19 18 22 22 N 1.38339 * 120.41755 * 179.97438 * 21 20 19 23 23 N 1.28602 * 134.12024 * 0.02562 * 22 21 20 24 24 N 1.28804 * 109.16622 * 179.97438 * 23 22 21 25 25 N 1.29023 * 109.93186 * 359.97438 * 24 23 22 26 26 C 1.32002 * 107.66024 * 359.68676 * 25 24 23 27 27 C 1.53042 * 109.53062 * 61.37129 * 12 11 10 28 28 C 1.46917 * 120.63397 * 151.85373 * 9 7 2 29 29 H 0.97005 * 119.99247 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58969 * 113.84680 * 10 9 7 31 31 H 1.08999 * 109.70842 * 353.48728 * 10 9 7 32 32 H 1.08995 * 109.49624 * 185.41168 * 11 10 9 33 33 H 1.09003 * 109.52115 * 65.33241 * 11 10 9 34 34 H 1.08997 * 109.46310 * 301.35883 * 12 11 10 35 35 H 0.96995 * 120.00365 * 334.97386 * 13 12 11 36 36 H 1.08000 * 119.97273 * 0.02562 * 17 16 15 37 37 H 1.07998 * 119.68766 * 180.02562 * 18 17 16 38 38 H 1.08006 * 119.78972 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.05794 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.49559 * 58.57506 * 27 12 11 41 41 H 1.08999 * 109.50096 * 178.67230 * 27 12 11 42 42 H 1.08998 * 109.59164 * 246.15168 * 28 9 7 43 43 H 1.09006 * 109.58510 * 6.44354 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0550 -1.2227 -0.2719 9 7 1.3700 -2.3623 0.3463 10 6 0.2261 -2.3398 1.2683 11 6 0.4981 -3.3181 2.4153 12 6 0.8130 -4.7000 1.8380 13 7 1.0412 -5.6460 2.9332 14 6 0.8271 -6.9968 2.7351 15 7 0.4241 -7.4350 1.5639 16 6 0.2070 -8.7559 1.3463 17 6 -0.2233 -9.1955 0.0867 18 6 -0.4432 -10.5242 -0.1353 19 6 -0.2445 -11.4521 0.8770 20 6 0.1793 -11.0451 2.1237 21 6 0.4084 -9.6959 2.3714 22 7 0.8334 -9.2752 3.6188 23 7 1.0989 -9.8766 4.7241 24 7 1.4638 -9.0072 5.6016 25 7 1.4432 -7.8252 5.0847 26 6 1.0570 -7.9444 3.8280 27 6 2.0683 -4.6164 0.9666 28 6 1.8140 -3.6530 -0.1971 29 1 -0.4849 0.8402 -0.0004 30 1 -0.6770 -2.6410 0.7375 31 1 0.0964 -1.3343 1.6686 32 1 -0.3823 -3.3829 3.0547 33 1 1.3476 -2.9662 3.0006 34 1 -0.0270 -5.0408 1.2328 35 1 1.3387 -5.3238 3.7983 36 1 -0.3809 -8.4822 -0.7088 37 1 -0.7743 -10.8563 -1.1081 38 1 -0.4222 -12.5003 0.6865 39 1 0.3325 -11.7724 2.9071 40 1 2.9031 -4.2518 1.5652 41 1 2.3057 -5.6054 0.5747 42 1 1.0404 -4.0614 -0.8473 43 1 2.7333 -3.5132 -0.7660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892403061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:40 Heat of formation + Delta-G solvation = 187.555523 kcal Electronic energy + Delta-G solvation = -28810.632780 eV Core-core repulsion = 24893.750434 eV Total energy + Delta-G solvation = -3916.882346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.84692 -41.45774 -40.00184 -38.31249 -36.96410 -35.86174 -34.14485 -33.70320 -32.01391 -31.67915 -31.33552 -30.14659 -27.17447 -26.48187 -26.03423 -24.77145 -23.80312 -23.40242 -22.86917 -21.18445 -20.88646 -20.17063 -19.10299 -18.87059 -18.41400 -17.69330 -16.86846 -16.72080 -16.26770 -15.79477 -15.68494 -15.43040 -15.30497 -15.04179 -14.81459 -14.73019 -14.54565 -14.05802 -14.00758 -13.97672 -13.20314 -13.11081 -12.99433 -12.93125 -12.75025 -12.70801 -12.58543 -12.49233 -12.20867 -12.01900 -11.87184 -11.78961 -11.59438 -11.29272 -11.13625 -10.69766 -10.50523 -10.02510 -8.80760 -8.67124 -7.86310 -5.30338 -0.96379 -0.76061 0.37910 0.40234 0.62557 1.47874 1.51114 1.52094 1.56673 1.59897 2.16199 2.51126 2.53564 2.71040 3.05387 3.30579 3.46861 3.65158 3.71914 3.81606 3.88636 4.03199 4.03638 4.11676 4.26361 4.36247 4.39121 4.48572 4.67039 4.68907 4.84211 4.87891 4.95712 5.01619 5.05772 5.12083 5.17907 5.23770 5.34910 5.37728 5.50467 5.62024 5.67424 5.71031 5.79459 5.98788 6.41812 6.70841 6.98990 7.17538 7.87959 8.38951 9.20595 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.002722 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.541004 B =10283.301088 C =11351.775431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.963 3.037 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.610 5.610 10 C 0.182 3.818 11 C -0.135 4.135 12 C 0.174 3.826 13 N -0.663 5.663 14 C 0.493 3.507 15 N -0.532 5.532 16 C 0.148 3.852 17 C -0.098 4.098 18 C -0.062 4.062 19 C -0.099 4.099 20 C -0.089 4.089 21 C 0.007 3.993 22 N -0.201 5.201 23 N -0.092 5.092 24 N -0.074 5.074 25 N -0.268 5.268 26 C 0.127 3.873 27 C -0.124 4.124 28 C 0.148 3.852 29 H 0.250 0.750 30 H 0.003 0.997 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.423 0.577 36 H 0.158 0.842 37 H 0.180 0.820 38 H 0.178 0.822 39 H 0.148 0.852 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.021 0.979 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.765 -23.982 0.905 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.243 4.243 3 Si 0.791 3.209 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.333 5.333 10 C 0.056 3.944 11 C -0.175 4.175 12 C 0.070 3.930 13 N -0.294 5.294 14 C 0.224 3.776 15 N -0.261 5.261 16 C 0.033 3.967 17 C -0.119 4.119 18 C -0.081 4.081 19 C -0.119 4.119 20 C -0.109 4.109 21 C -0.094 4.094 22 N 0.006 4.994 23 N -0.075 5.075 24 N -0.066 5.066 25 N -0.124 5.124 26 C -0.145 4.145 27 C -0.164 4.164 28 C 0.022 3.978 29 H 0.059 0.941 30 H 0.022 0.978 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.262 0.738 36 H 0.176 0.824 37 H 0.197 0.803 38 H 0.195 0.805 39 H 0.166 0.834 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.039 0.961 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.686 -23.835 1.494 23.941 hybrid contribution 0.406 1.128 0.484 1.293 sum -1.280 -22.706 1.978 22.828 Atomic orbital electron populations 1.70156 1.06500 1.25837 1.55335 1.25729 0.95996 1.01261 1.01272 0.85355 0.78128 0.79921 0.77496 1.21284 1.21952 1.19719 1.19469 0.92816 0.85984 1.40924 0.91687 1.44344 1.35926 1.02329 1.50744 1.20517 0.88008 0.97418 0.88482 1.22342 1.01906 0.93936 0.99323 1.20939 0.98428 0.86994 0.86618 1.44911 1.67388 1.00557 1.16549 1.18676 0.89604 0.85190 0.84113 1.68610 1.25083 1.15019 1.17339 1.18834 0.98079 0.85694 0.94071 1.20988 0.99451 0.98040 0.93397 1.21527 0.94135 0.91136 1.01333 1.21600 0.97318 1.02577 0.90405 1.21124 0.98517 0.90994 1.00289 1.18914 1.12219 0.98001 0.80238 1.45638 1.37571 1.06263 1.09959 1.78753 1.18223 1.21693 0.88867 1.78653 1.14656 0.92932 1.20330 1.75276 1.17588 1.16473 1.03014 1.25183 1.06780 0.86966 0.95607 1.22205 0.97147 0.99370 0.97679 1.20955 0.97683 0.85488 0.93687 0.94074 0.97843 0.92167 0.90539 0.91674 0.89462 0.73788 0.82428 0.80293 0.80455 0.83418 0.92459 0.91041 0.96122 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.35 11.19 21.65 0.24 -53.11 16 2 C -0.05 -2.54 4.92 84.86 0.42 -2.13 16 3 Si 0.96 43.78 29.59 68.60 2.03 45.81 16 4 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.26 -13.89 9.58 84.03 0.81 -13.09 16 8 H 0.07 3.38 7.88 -2.91 -0.02 3.36 16 9 N -0.61 -29.04 2.99 -699.07 -2.09 -31.13 16 10 C 0.18 8.19 5.30 86.36 0.46 8.64 16 11 C -0.14 -4.53 5.55 30.67 0.17 -4.36 16 12 C 0.17 5.18 2.43 45.02 0.11 5.29 16 13 N -0.66 -17.20 5.20 -319.03 -1.66 -18.86 16 14 C 0.49 13.29 7.68 135.57 1.04 14.33 16 15 N -0.53 -13.93 9.23 -181.39 -1.67 -15.61 16 16 C 0.15 3.27 6.58 39.59 0.26 3.53 16 17 C -0.10 -1.46 9.93 22.33 0.22 -1.24 16 18 C -0.06 -0.49 9.96 21.99 0.22 -0.27 16 19 C -0.10 -0.79 10.03 22.30 0.22 -0.56 16 20 C -0.09 -1.32 9.82 22.37 0.22 -1.10 16 21 C 0.01 0.16 6.63 38.87 0.26 0.42 16 22 N -0.20 -5.39 3.69 -181.25 -0.67 -6.06 16 23 N -0.09 -2.60 13.23 37.02 0.49 -2.11 16 24 N -0.07 -2.27 13.41 37.02 0.50 -1.77 16 25 N -0.27 -8.08 12.42 -52.09 -0.65 -8.73 16 26 C 0.13 3.59 8.12 135.94 1.10 4.70 16 27 C -0.12 -3.91 5.67 30.67 0.17 -3.74 16 28 C 0.15 5.77 6.52 86.37 0.56 6.33 16 29 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 30 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.06 3.11 6.06 -2.39 -0.01 3.09 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.09 2.77 7.54 -2.39 -0.02 2.76 16 35 H 0.42 9.98 8.63 -92.71 -0.80 9.18 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.18 0.09 8.06 -2.91 -0.02 0.06 16 38 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 39 H 0.15 1.94 8.04 -2.91 -0.02 1.92 16 40 H 0.06 1.86 8.14 -2.38 -0.02 1.85 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 2.16 7.93 -2.38 -0.02 2.14 16 Total: -1.00 -66.85 358.42 3.02 -63.83 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.27 Total: 10.99 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 6.24 Total: 16.76 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -5.51 Total: -137.38 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -66.85 3.02 -63.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892403061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.386 kcal (2) G-P(sol) polarization free energy of solvation -66.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds