Wall clock time and date at job start Tue Mar 31 2020 23:00:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 120.00070 * 2 1
4 4 H 1.48500 * 109.47026 * 239.99960 * 3 2 1
5 5 H 1.48493 * 109.47017 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.46849 * 120.00191 * 3 2 1
7 7 C 1.37880 * 119.99932 * 179.97438 * 2 1 3
8 8 H 1.07989 * 120.00117 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99661 * 0.02562 * 7 2 1
10 10 C 1.50701 * 109.46720 * 179.97438 * 9 7 2
11 11 C 1.38281 * 119.93282 * 269.72570 * 10 9 7
12 12 C 1.38112 * 120.07262 * 179.73078 * 11 10 9
13 13 C 1.38865 * 119.92772 * 0.53829 * 12 11 10
14 14 N 1.39944 * 120.07098 * 179.74844 * 13 12 11
15 15 C 1.34778 * 120.00551 * 213.25223 * 14 13 12
16 16 O 1.21586 * 119.99620 * 5.31409 * 15 14 13
17 17 N 1.34773 * 120.00106 * 185.32209 * 15 14 13
18 18 C 1.46502 * 119.99965 * 180.02562 * 17 15 14
19 19 H 1.09001 * 109.49937 * 324.91280 * 18 17 15
20 20 C 1.53031 * 109.50526 * 84.99129 * 18 17 15
21 21 N 1.46846 * 109.52517 * 179.11968 * 20 18 17
22 22 C 1.46851 * 111.20101 * 298.26430 * 21 20 18
23 23 C 1.53039 * 109.52478 * 61.73518 * 22 21 20
24 24 C 1.53114 * 109.50436 * 204.79908 * 18 17 15
25 25 F 1.39903 * 109.52413 * 302.30752 * 24 18 17
26 26 F 1.39904 * 109.52498 * 62.49696 * 24 18 17
27 27 C 1.38869 * 119.86237 * 359.73769 * 13 12 11
28 28 C 1.38117 * 119.92939 * 359.97438 * 27 13 12
29 29 H 0.97003 * 119.99695 * 359.97438 * 1 2 3
30 30 H 1.09002 * 109.46878 * 299.99239 * 9 7 2
31 31 H 1.08994 * 109.47568 * 59.99993 * 9 7 2
32 32 H 1.07998 * 119.96050 * 359.97438 * 11 10 9
33 33 H 1.07998 * 120.03668 * 180.30043 * 12 11 10
34 34 H 0.97002 * 119.99558 * 33.25651 * 14 13 12
35 35 H 0.97002 * 120.00079 * 359.97438 * 17 15 14
36 36 H 1.08996 * 109.46917 * 299.14110 * 20 18 17
37 37 H 1.09001 * 109.46039 * 59.10885 * 20 18 17
38 38 H 1.00898 * 111.00314 * 174.16548 * 21 20 18
39 39 H 1.08994 * 109.46731 * 181.75429 * 22 21 20
40 40 H 1.09006 * 109.46108 * 301.72610 * 22 21 20
41 41 H 1.09004 * 109.49930 * 60.76325 * 23 22 21
42 42 H 1.08997 * 109.50605 * 180.84292 * 23 22 21
43 43 H 1.07995 * 120.03592 * 180.02562 * 27 13 12
44 44 H 1.07997 * 119.96789 * 179.97438 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6963 -1.2125
5 1 1.2842 2.7464 0.0006
6 1 3.1029 1.6963 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0844 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 6 2.2302 -3.6446 0.0005
11 6 2.6742 -4.1728 -1.1978
12 6 3.5760 -5.2189 -1.2012
13 6 4.0282 -5.7477 0.0006
14 7 4.9378 -6.8111 0.0006
15 6 4.8896 -7.7393 0.9766
16 8 3.9971 -7.7079 1.8018
17 7 5.8306 -8.7022 1.0381
18 6 5.7777 -9.7115 2.0987
19 1 5.4006 -9.2571 3.0148
20 6 4.8490 -10.8511 1.6737
21 7 4.8122 -11.8731 2.7276
22 6 6.1417 -12.4565 2.9482
23 6 7.1090 -11.3647 3.4112
24 6 7.1825 -10.2689 2.3443
25 9 7.6865 -10.8071 1.1554
26 9 8.0225 -9.2413 2.7868
27 6 3.5760 -5.2188 1.2024
28 6 2.6788 -4.1688 1.1990
29 1 -0.4850 0.8401 0.0004
30 1 0.6240 -2.5567 0.8904
31 1 0.6246 -2.5571 -0.8896
32 1 2.3185 -3.7642 -2.1321
33 1 3.9261 -5.6278 -2.1375
34 1 5.6032 -6.8802 -0.7019
35 1 6.5424 -8.7274 0.3796
36 1 3.8446 -10.4600 1.5118
37 1 5.2189 -11.2955 0.7497
38 1 4.1342 -12.5890 2.5136
39 1 6.0761 -13.2313 3.7120
40 1 6.5055 -12.8934 2.0182
41 1 6.7530 -10.9368 4.3484
42 1 8.0992 -11.7952 3.5605
43 1 3.9262 -5.6276 2.1386
44 1 2.3265 -3.7573 2.1333
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000926193880.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:00:06
Heat of formation + Delta-G solvation = -102.090194 kcal
Electronic energy + Delta-G solvation = -28910.217561 eV
Core-core repulsion = 24497.793296 eV
Total energy + Delta-G solvation = -4412.424264 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.150 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-49.51479 -47.49059 -40.66496 -38.85068 -37.99313 -35.10048 -34.71327 -32.98978
-31.80808 -30.79805 -30.26313 -29.51008 -26.51845 -24.33871 -24.12186 -23.04507
-22.35274 -21.15080 -20.86115 -20.14888 -18.83175 -18.20371 -17.78229 -16.99068
-16.58056 -16.41070 -16.26727 -15.90991 -15.32724 -15.15340 -14.86981 -14.52971
-14.27586 -14.19722 -14.01161 -13.87721 -13.76970 -13.33476 -13.02831 -12.96735
-12.79040 -12.77967 -12.55535 -12.22706 -11.99598 -11.89138 -11.37343 -11.24722
-11.05082 -10.80514 -10.61401 -10.39716 -10.22211 -9.91411 -9.60364 -9.42746
-9.25919 -9.10097 -8.39052 -8.25401 -7.33918 -6.00525 -4.04505 1.93634
2.09490 2.27255 3.00237 3.12665 3.34222 3.38223 3.41169 3.41558
3.56247 3.79187 3.89276 4.07219 4.34734 4.41358 4.59807 4.61206
4.65619 4.85318 4.88337 5.16931 5.18603 5.33205 5.36140 5.42245
5.45809 5.59227 5.90006 5.94266 6.04121 6.12695 6.23366 6.31344
6.49855 6.68779 6.69044 6.94411 7.00732 7.20313 7.24953 7.55094
7.74149 7.77396 7.90611 7.95212 8.35846 8.39833 9.00618 9.58940
11.08983
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.026860 B = 0.002005 C = 0.001971
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.210276 B =13964.582019 C =14201.970704
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.057 3.943
3 Si 0.895 3.105
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.276 1.276
7 C -0.511 4.511
8 H 0.057 0.943
9 C 0.048 3.952
10 C -0.043 4.043
11 C -0.108 4.108
12 C -0.144 4.144
13 C 0.122 3.878
14 N -0.678 5.678
15 C 0.706 3.294
16 O -0.564 6.564
17 N -0.742 5.742
18 C 0.136 3.864
19 H 0.127 0.873
20 C 0.047 3.953
21 N -0.685 5.685
22 C 0.055 3.945
23 C -0.155 4.155
24 C 0.281 3.719
25 F -0.198 7.198
26 F -0.191 7.191
27 C -0.116 4.116
28 C -0.107 4.107
29 H 0.262 0.738
30 H 0.029 0.971
31 H 0.028 0.972
32 H 0.122 0.878
33 H 0.113 0.887
34 H 0.402 0.598
35 H 0.400 0.600
36 H 0.099 0.901
37 H 0.043 0.957
38 H 0.357 0.643
39 H 0.094 0.906
40 H 0.043 0.957
41 H 0.108 0.892
42 H 0.098 0.902
43 H 0.125 0.875
44 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.399 -27.596 2.754 31.722
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.144 4.144
3 Si 0.723 3.277
4 H -0.202 1.202
5 H -0.213 1.213
6 H -0.202 1.202
7 C -0.549 4.549
8 H 0.075 0.925
9 C 0.011 3.989
10 C -0.044 4.044
11 C -0.126 4.126
12 C -0.165 4.165
13 C 0.029 3.971
14 N -0.325 5.325
15 C 0.407 3.593
16 O -0.439 6.439
17 N -0.399 5.399
18 C 0.029 3.971
19 H 0.145 0.855
20 C -0.084 4.084
21 N -0.318 5.318
22 C -0.075 4.075
23 C -0.193 4.193
24 C 0.244 3.756
25 F -0.179 7.179
26 F -0.172 7.172
27 C -0.136 4.136
28 C -0.125 4.125
29 H 0.072 0.928
30 H 0.047 0.953
31 H 0.047 0.953
32 H 0.140 0.860
33 H 0.131 0.869
34 H 0.236 0.764
35 H 0.235 0.765
36 H 0.117 0.883
37 H 0.062 0.938
38 H 0.176 0.824
39 H 0.112 0.888
40 H 0.061 0.939
41 H 0.127 0.873
42 H 0.117 0.883
43 H 0.143 0.857
44 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 14.535 -27.001 4.029 30.928
hybrid contribution 1.508 0.397 -1.621 2.250
sum 16.044 -26.604 2.408 31.160
Atomic orbital electron populations
1.69951 1.06015 1.26874 1.50502 1.25018 0.94887 0.99228 0.95265
0.86599 0.79523 0.82866 0.78699 1.20209 1.21277 1.20180 1.21032
0.93009 0.89900 1.50963 0.92519 1.18344 0.92567 0.89567 0.98389
1.20708 0.96520 0.95323 0.91857 1.20864 0.97366 0.95854 0.98543
1.20692 1.00359 1.00028 0.95400 1.17276 0.95444 0.89942 0.94444
1.42434 1.36212 1.25247 1.28577 1.15814 0.82113 0.79000 0.82388
1.90988 1.35742 1.75715 1.41452 1.44897 1.31183 1.30325 1.33481
1.21690 0.91904 0.89498 0.94039 0.85524 1.22329 1.01523 0.91986
0.92592 1.60180 1.07717 1.17429 1.46509 1.21936 0.88666 0.95782
1.01113 1.22618 1.02495 0.95546 0.98679 1.21491 0.86947 0.84967
0.82190 1.93002 1.89081 1.86514 1.49274 1.93065 1.73779 1.60969
1.89396 1.21007 0.99426 0.96434 0.96751 1.20995 0.97450 0.95557
0.98528 0.92819 0.95285 0.95339 0.86008 0.86871 0.76355 0.76533
0.88280 0.93832 0.82376 0.88791 0.93863 0.87337 0.88349 0.85736
0.86080
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16
4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16
6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
7 C -0.51 -14.40 9.09 -34.44 -0.31 -14.71 16
8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16
9 C 0.05 1.25 5.10 -29.03 -0.15 1.11 16
10 C -0.04 -0.96 5.07 -104.59 -0.53 -1.49 16
11 C -0.11 -2.09 9.69 -39.61 -0.38 -2.47 16
12 C -0.14 -2.37 9.96 -39.40 -0.39 -2.76 16
13 C 0.12 2.02 6.28 -83.69 -0.53 1.50 16
14 N -0.68 -8.66 5.35 -14.22 -0.08 -8.74 16
15 C 0.71 9.46 8.27 -86.92 -0.72 8.74 16
16 O -0.56 -9.71 13.69 5.29 0.07 -9.64 16
17 N -0.74 -7.21 5.02 -58.60 -0.29 -7.51 16
18 C 0.14 1.24 2.18 -67.85 -0.15 1.09 16
19 H 0.13 1.39 7.58 -51.93 -0.39 1.00 16
20 C 0.05 0.37 6.01 -3.84 -0.02 0.34 16
21 N -0.69 -4.21 6.85 -113.82 -0.78 -4.99 16
22 C 0.05 0.25 6.44 -3.83 -0.02 0.23 16
23 C -0.15 -0.85 5.62 -26.65 -0.15 -1.00 16
24 C 0.28 2.23 1.72 -26.61 -0.05 2.18 16
25 F -0.20 -1.63 15.77 2.25 0.04 -1.59 16
26 F -0.19 -1.89 17.03 2.25 0.04 -1.86 16
27 C -0.12 -2.18 8.65 -39.39 -0.34 -2.53 16
28 C -0.11 -2.21 9.69 -39.61 -0.38 -2.59 16
29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
30 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16
31 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16
32 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16
33 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16
34 H 0.40 3.67 8.83 -40.82 -0.36 3.31 16
35 H 0.40 3.04 8.26 -40.82 -0.34 2.71 16
36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16
37 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16
38 H 0.36 1.60 8.90 -39.29 -0.35 1.25 16
39 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16
40 H 0.04 0.20 7.88 -51.93 -0.41 -0.21 16
41 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16
42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16
43 H 0.12 2.34 6.41 -52.49 -0.34 2.01 16
44 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16
LS Contribution 371.78 15.07 5.60 5.60
Total: -1.00 -33.37 371.78 -9.85 -43.21
By element:
Atomic # 1 Polarization: 11.46 SS G_CDS: -5.94 Total: 5.53 kcal
Atomic # 6 Polarization: -6.60 SS G_CDS: -4.23 Total: -10.82 kcal
Atomic # 7 Polarization: -46.70 SS G_CDS: -0.41 Total: -47.11 kcal
Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal
Atomic # 9 Polarization: -3.52 SS G_CDS: 0.07 Total: -3.45 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -33.37 -9.85 -43.21 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000926193880.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.876 kcal
(2) G-P(sol) polarization free energy of solvation -33.368 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.244 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.090 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds